2gnm - Revision history

OCA at 20:41, 20 October 2021

2021-10-20T20:41:07Z

←Older revision		Revision as of 20:41, 20 October 2021
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	<StructureSection load='2gnm' size='340' side='right'caption='[[2gnm]], [[Resolution\|resolution]] 1.95Å' scene=''>		<StructureSection load='2gnm' size='340' side='right'caption='[[2gnm]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2gnm]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GNM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2GNM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2gnm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GNM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GNM FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ukg\|1ukg]], [[2gme\|2gme]], [[2gmm\|2gmm]], [[2gmp\|2gmp]], [[2gn3\|2gn3]], [[2gnb\|2gnb]], [[2gnt\|2gnt]], [[2gnd\|2gnd]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ukg\|1ukg]], [[2gme\|2gme]], [[2gmm\|2gmm]], [[2gmp\|2gmp]], [[2gn3\|2gn3]], [[2gnb\|2gnb]], [[2gnt\|2gnt]], [[2gnd\|2gnd]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2gnm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gnm OCA], [~~http~~://pdbe.org/2gnm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2gnm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2gnm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2gnm ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gnm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gnm OCA], [https://pdbe.org/2gnm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gnm RCSB], [https://www.ebi.ac.uk/pdbsum/2gnm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gnm ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 09:41, 25 December 2019

2019-12-25T09:41:04Z

←Older revision		Revision as of 09:41, 25 December 2019
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	<StructureSection load='2gnm' size='340' side='right'caption='[[2gnm]], [[Resolution\|resolution]] 1.95Å' scene=''>		<StructureSection load='2gnm' size='340' side='right'caption='[[2gnm]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2gnm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bleedwood_tree Bleedwood tree~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GNM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GNM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2gnm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GNM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GNM FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
Line 35:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bleedwood tree]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Pterocarpus angolensis]]
	[[Category: Buts, L]]		[[Category: Buts, L]]
	[[Category: Garcia-Pino, A]]		[[Category: Garcia-Pino, A]]

OCA at 08:52, 24 July 2019

2019-07-24T08:52:24Z

←Older revision		Revision as of 08:52, 24 July 2019
Line 1:		Line 1:

	==P. angolensis lectin (PAL) treated with EDTA for 39 hours==		==P. angolensis lectin (PAL) treated with EDTA for 39 hours==
-	<StructureSection load='2gnm' size='340' side='right' caption='[[2gnm]], [[Resolution\|resolution]] 1.95Å' scene=''>	+	<StructureSection load='2gnm' size='340' side='right'caption='[[2gnm]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2gnm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bleedwood_tree Bleedwood tree]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GNM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GNM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2gnm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bleedwood_tree Bleedwood tree]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GNM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GNM FirstGlance]. <br>
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gn/2gnm_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gn/2gnm_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 36:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Bleedwood tree]]		[[Category: Bleedwood tree]]
		+	[[Category: Large Structures]]
	[[Category: Buts, L]]		[[Category: Buts, L]]
	[[Category: Garcia-Pino, A]]		[[Category: Garcia-Pino, A]]

OCA at 07:57, 18 October 2017

2017-10-18T07:57:16Z

←Older revision		Revision as of 07:57, 18 October 2017
Line 1:		Line 1:
		+
	==P. angolensis lectin (PAL) treated with EDTA for 39 hours==		==P. angolensis lectin (PAL) treated with EDTA for 39 hours==
	<StructureSection load='2gnm' size='340' side='right' caption='[[2gnm]], [[Resolution\|resolution]] 1.95Å' scene=''>		<StructureSection load='2gnm' size='340' side='right' caption='[[2gnm]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2gnm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pterocarpus_angolensis Pterocarpus angolensis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GNM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GNM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2gnm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bleedwood_tree Bleedwood tree]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GNM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GNM FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ukg\|1ukg]], [[2gme\|2gme]], [[2gmm\|2gmm]], [[2gmp\|2gmp]], [[2gn3\|2gn3]], [[2gnb\|2gnb]], [[2gnt\|2gnt]], [[2gnd\|2gnd]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ukg\|1ukg]], [[2gme\|2gme]], [[2gmm\|2gmm]], [[2gmp\|2gmp]], [[2gn3\|2gn3]], [[2gnb\|2gnb]], [[2gnt\|2gnt]], [[2gnd\|2gnd]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gnm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gnm OCA], [http://pdbe.org/2gnm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gnm RCSB], [http://www.ebi.ac.uk/pdbsum/2gnm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gnm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gnm OCA], [http://pdbe.org/2gnm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gnm RCSB], [http://www.ebi.ac.uk/pdbsum/2gnm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2gnm ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Pterocarpus angolensis~~]]	+	[[Category: Bleedwood tree]]
	[[Category: Buts, L]]		[[Category: Buts, L]]
	[[Category: Garcia-Pino, A]]		[[Category: Garcia-Pino, A]]

OCA at 21:27, 9 February 2016

2016-02-09T21:27:51Z

←Older revision		Revision as of 21:27, 9 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gnm ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 02:12, 11 September 2015

2015-09-11T02:12:27Z

←Older revision		Revision as of 02:12, 11 September 2015
Line 6:		Line 6:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ukg\|1ukg]], [[2gme\|2gme]], [[2gmm\|2gmm]], [[2gmp\|2gmp]], [[2gn3\|2gn3]], [[2gnb\|2gnb]], [[2gnt\|2gnt]], [[2gnd\|2gnd]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ukg\|1ukg]], [[2gme\|2gme]], [[2gmm\|2gmm]], [[2gmp\|2gmp]], [[2gn3\|2gn3]], [[2gnb\|2gnb]], [[2gnt\|2gnt]], [[2gnd\|2gnd]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gnm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gnm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gnm RCSB], [http://www.ebi.ac.uk/pdbsum/2gnm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gnm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gnm OCA], [http://pdbe.org/2gnm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gnm RCSB], [http://www.ebi.ac.uk/pdbsum/2gnm PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2gnm" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 08:47, 16 January 2015

2015-01-16T08:47:07Z

←Older revision		Revision as of 08:47, 16 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2gnm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GNM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GNM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2gnm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GNM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GNM FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ukg\|1ukg]], [[2gme\|2gme]], [[2gmm\|2gmm]], [[2gmp\|2gmp]], [[2gn3\|2gn3]], [[2gnb\|2gnb]], [[2gnt\|2gnt]], [[2gnd\|2gnd]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ukg\|1ukg]], [[2gme\|2gme]], [[2gmm\|2gmm]], [[2gmp\|2gmp]], [[2gn3\|2gn3]], [[2gnb\|2gnb]], [[2gnt\|2gnt]], [[2gnd\|2gnd]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gnm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gnm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gnm RCSB], [http://www.ebi.ac.uk/pdbsum/2gnm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gnm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gnm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gnm RCSB], [http://www.ebi.ac.uk/pdbsum/2gnm PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Pterocarpus angolensis]]		[[Category: Pterocarpus angolensis]]
-	[[Category: Buts, L.]]	+	[[Category: Buts, L]]
-	[[Category: Garcia-Pino, A.]]	+	[[Category: Garcia-Pino, A]]
-	[[Category: Loris, R.]]	+	[[Category: Loris, R]]
-	[[Category: Wyns, L.]]	+	[[Category: Wyns, L]]
	[[Category: Beta sandwich]]		[[Category: Beta sandwich]]
	[[Category: Edta treatment]]		[[Category: Edta treatment]]

OCA at 08:24, 30 September 2014

2014-09-30T08:24:14Z

←Older revision		Revision as of 08:24, 30 September 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_2gnm\| PDB=2gnm \| SCENE= }}~~	+	==P. angolensis lectin (PAL) treated with EDTA for 39 hours==
-	===P. angolensis lectin (PAL) treated with EDTA for 39 hours===	+	<StructureSection load='2gnm' size='340' side='right' caption='[[2gnm]], [[Resolution\|resolution]] 1.95Å' scene=''>
-	~~{{ABSTRACT_PUBMED_16824540}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2gnm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GNM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GNM FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ukg\|1ukg]], [[2gme\|2gme]], [[2gmm\|2gmm]], [[2gmp\|2gmp]], [[2gn3\|2gn3]], [[2gnb\|2gnb]], [[2gnt\|2gnt]], [[2gnd\|2gnd]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gnm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gnm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gnm RCSB], [http://www.ebi.ac.uk/pdbsum/2gnm PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gn/2gnm_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The interplay between metal binding, carbohydrate binding activity, stability and structure of the lectin from Pterocarpus angolensis was investigated. Removal of the metals leads to a more flexible form of the protein with significantly less conformational stability. Crystal structures of this metal-free form show significant structural rearrangements, although some structural features that allow the binding of sugars are retained. We propose that substitution of an asparagine residue at the start of the C-terminal beta-strand of the legume lectin monomer hinders the trans-isomerization of the cis-peptide bond upon demetallization and constitutes an intramolecular switch governing the isomer state of the non-proline bond and ultimately the lectin phenotype.

-	~~==About this Structure==~~	+	Interplay between metal binding and cis/trans isomerization in legume lectins: structural and thermodynamic study of P. angolensis lectin.,Garcia-Pino A, Buts L, Wyns L, Loris R J Mol Biol. 2006 Aug 4;361(1):153-67. Epub 2006 Jun 21. PMID:16824540<ref>PMID:16824540</ref>
-	~~[[2gnm]] is a 2 chain structure with sequence from [http:~~/~~/en~~.~~wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus~~ angolensis]. ~~Full crystallographic information is available from [http~~://~~oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=2GNM OCA].~~	+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

	==See Also==		==See Also==
	*[[Pal\|Pal]]		*[[Pal\|Pal]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:016824540<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Pterocarpus angolensis]]		[[Category: Pterocarpus angolensis]]
	[[Category: Buts, L.]]		[[Category: Buts, L.]]

OCA at 09:39, 11 March 2013

2013-03-11T09:39:01Z

←Older revision		Revision as of 09:39, 11 March 2013
Line 1:		Line 1:
-	[[Image:2gnm.png\|left\|200px]]
-
	{{STRUCTURE_2gnm\| PDB=2gnm \| SCENE= }}		{{STRUCTURE_2gnm\| PDB=2gnm \| SCENE= }}
-
	===P. angolensis lectin (PAL) treated with EDTA for 39 hours===		===P. angolensis lectin (PAL) treated with EDTA for 39 hours===
-
	{{ABSTRACT_PUBMED_16824540}}		{{ABSTRACT_PUBMED_16824540}}

	==About this Structure==		==About this Structure==
	[[2gnm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GNM OCA].		[[2gnm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GNM OCA].
		+
		+	==See Also==
		+	*[[Pal\|Pal]]

	==Reference==		==Reference==

OCA: Protected "2gnm" [edit=sysop:move=sysop]

2013-01-07T13:25:57Z

Protected "2gnm" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:25, 7 January 2013