2gpj - Revision history

OCA at 06:45, 25 January 2023

2023-01-25T06:45:49Z

←Older revision		Revision as of 06:45, 25 January 2023
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	<StructureSection load='2gpj' size='340' side='right'caption='[[2gpj]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='2gpj' size='340' side='right'caption='[[2gpj]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2gpj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Shepc Shepc~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GPJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2gpj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_putrefaciens_CN-32 Shewanella putrefaciens CN-32]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GPJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~</td></tr>~~	+
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ZP_00813641.1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=319224 SHEPC])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gpj OCA], [https://pdbe.org/2gpj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gpj RCSB], [https://www.ebi.ac.uk/pdbsum/2gpj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gpj ProSAT], [https://www.topsan.org/Proteins/JCSG/2gpj TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gpj OCA], [https://pdbe.org/2gpj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gpj RCSB], [https://www.ebi.ac.uk/pdbsum/2gpj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gpj ProSAT], [https://www.topsan.org/Proteins/JCSG/2gpj TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A4Y1H9_SHEPC A4Y1H9_SHEPC]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Shepc]]~~	+	[[Category: Shewanella putrefaciens CN-32]]
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Fad~~-~~binding protein]]~~	+
-	~~[[Category: Jcsg]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Siderophore-interacting protein~~]]	+

OCA at 19:12, 10 March 2021

2021-03-10T19:12:58Z

←Older revision		Revision as of 19:12, 10 March 2021
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF A SIDEROPHORE-INTERACTING PROTEIN (SPUTCN32_0076) FROM SHEWANELLA PUTREFACIENS CN-32 AT 2.20 A RESOLUTION==		==CRYSTAL STRUCTURE OF A SIDEROPHORE-INTERACTING PROTEIN (SPUTCN32_0076) FROM SHEWANELLA PUTREFACIENS CN-32 AT 2.20 A RESOLUTION==
-	<StructureSection load='2gpj' size='340' side='right' caption='[[2gpj]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='2gpj' size='340' side='right'caption='[[2gpj]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2gpj]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Shepc Shepc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2GPJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2gpj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shepc Shepc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GPJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ZP_00813641.1 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=319224 SHEPC])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ZP_00813641.1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=319224 SHEPC])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2gpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gpj OCA], [~~http~~://pdbe.org/2gpj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2gpj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2gpj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2gpj ProSAT], [~~http~~://www.topsan.org/Proteins/JCSG/2gpj TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gpj OCA], [https://pdbe.org/2gpj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gpj RCSB], [https://www.ebi.ac.uk/pdbsum/2gpj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gpj ProSAT], [https://www.topsan.org/Proteins/JCSG/2gpj TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Shepc]]		[[Category: Shepc]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 07:24, 20 June 2018

2018-06-20T07:24:17Z

←Older revision		Revision as of 07:24, 20 June 2018
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF A SIDEROPHORE-INTERACTING PROTEIN (SPUTCN32_0076) FROM SHEWANELLA PUTREFACIENS CN-32 AT 2.20 A RESOLUTION==		==CRYSTAL STRUCTURE OF A SIDEROPHORE-INTERACTING PROTEIN (SPUTCN32_0076) FROM SHEWANELLA PUTREFACIENS CN-32 AT 2.20 A RESOLUTION==
	<StructureSection load='2gpj' size='340' side='right' caption='[[2gpj]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='2gpj' size='340' side='right' caption='[[2gpj]], [[Resolution\|resolution]] 2.20Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ZP_00813641.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=319224 SHEPC])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ZP_00813641.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=319224 SHEPC])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gpj OCA], [http://pdbe.org/2gpj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gpj RCSB], [http://www.ebi.ac.uk/pdbsum/2gpj PDBsum], [http://www.topsan.org/Proteins/JCSG/2gpj TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gpj OCA], [http://pdbe.org/2gpj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gpj RCSB], [http://www.ebi.ac.uk/pdbsum/2gpj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2gpj ProSAT], [http://www.topsan.org/Proteins/JCSG/2gpj TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gp/2gpj_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gp/2gpj_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gpj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 22:37, 11 September 2015

2015-09-11T22:37:23Z

←Older revision		Revision as of 22:37, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2gpj' size='340' side='right' caption='[[2gpj]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='2gpj' size='340' side='right' caption='[[2gpj]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2gpj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Shewanella_putrefaciens Shewanella putrefaciens~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GPJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2gpj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Shepc Shepc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GPJ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ZP_00813641.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~24 Shewanella putrefaciens~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ZP_00813641.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=319224 SHEPC])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gpj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gpj RCSB], [http://www.ebi.ac.uk/pdbsum/2gpj PDBsum], [http://www.topsan.org/Proteins/JCSG/2gpj TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gpj OCA], [http://pdbe.org/2gpj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gpj RCSB], [http://www.ebi.ac.uk/pdbsum/2gpj PDBsum], [http://www.topsan.org/Proteins/JCSG/2gpj TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Shewanella putrefaciens~~]]	+	[[Category: Shepc]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Fad-binding protein]]		[[Category: Fad-binding protein]]

OCA at 08:39, 16 January 2015

2015-01-16T08:39:42Z

←Older revision		Revision as of 08:39, 16 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2gpj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_putrefaciens Shewanella putrefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GPJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2gpj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_putrefaciens Shewanella putrefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GPJ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ZP_00813641.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=24 Shewanella putrefaciens])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ZP_00813641.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=24 Shewanella putrefaciens])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gpj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gpj RCSB], [http://www.ebi.ac.uk/pdbsum/2gpj PDBsum], [http://www.topsan.org/Proteins/JCSG/2gpj TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gpj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gpj RCSB], [http://www.ebi.ac.uk/pdbsum/2gpj PDBsum], [http://www.topsan.org/Proteins/JCSG/2gpj TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Shewanella putrefaciens]]		[[Category: Shewanella putrefaciens]]
-	[[Category: ~~JCSG, Joint Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
	[[Category: Fad-binding protein]]		[[Category: Fad-binding protein]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
-	[[Category: ~~Joint center for structural genomic]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi-2~~]]	+
	[[Category: Siderophore-interacting protein]]		[[Category: Siderophore-interacting protein]]
-	[[Category: Structural genomic]]

OCA at 10:13, 30 September 2014

2014-09-30T10:13:46Z

←Older revision		Revision as of 10:13, 30 September 2014
Line 1:		Line 1:
-	~~[[Image:2gpj.png\|left\|200px]]~~	+	==CRYSTAL STRUCTURE OF A SIDEROPHORE-INTERACTING PROTEIN (SPUTCN32_0076) FROM SHEWANELLA PUTREFACIENS CN-32 AT 2.20 A RESOLUTION==
-		+	<StructureSection load='2gpj' size='340' side='right' caption='[[2gpj]], [[Resolution\|resolution]] 2.20Å' scene=''>
-	~~{{STRUCTURE_2gpj\| PDB=2gpj \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2gpj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_putrefaciens Shewanella putrefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GPJ FirstGlance]. <br>
-	===CRYSTAL STRUCTURE OF A SIDEROPHORE-INTERACTING PROTEIN (SPUTCN32_0076) FROM SHEWANELLA PUTREFACIENS CN-32 AT 2.20 A RESOLUTION===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ZP_00813641.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=24 Shewanella putrefaciens])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gpj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gpj RCSB], [http://www.ebi.ac.uk/pdbsum/2gpj PDBsum], [http://www.topsan.org/Proteins/JCSG/2gpj TOPSAN]</span></td></tr>
-	[[2gpj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_putrefaciens Shewanella putrefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPJ OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gp/2gpj_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Shewanella putrefaciens]]		[[Category: Shewanella putrefaciens]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]

OCA: Protected "2gpj" [edit=sysop:move=sysop]

2013-01-07T12:03:08Z

Protected "2gpj" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:03, 7 January 2013

OCA at 12:03, 7 January 2013

2013-01-07T12:03:05Z

←Older revision		Revision as of 12:03, 7 January 2013
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-	{{Seed}}
	[[Image:2gpj.png\|left\|200px]]		[[Image:2gpj.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2gpj", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2gpj\| PDB=2gpj \| SCENE= }}		{{STRUCTURE_2gpj\| PDB=2gpj \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~2GPJ~~ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacteria Bacteria~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPJ OCA].	+	[[2gpj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_putrefaciens Shewanella putrefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPJ OCA].
-	[[Category: ~~Bacteria~~]]	+	[[Category: Shewanella putrefaciens]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
	[[Category: Fad-binding protein]]		[[Category: Fad-binding protein]]
Line 24:		Line 17:
	[[Category: Siderophore-interacting protein]]		[[Category: Siderophore-interacting protein]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 28 12:10:40 2010''

OCA at 08:03, 28 July 2010

2010-07-28T08:03:57Z

←Older revision		Revision as of 08:03, 28 July 2010
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	{{STRUCTURE_2gpj\| PDB=2gpj \| SCENE= }}		{{STRUCTURE_2gpj\| PDB=2gpj \| SCENE= }}

-	===~~Crystal structure of siderophore~~-~~interacting protein~~ (~~ZP_00813641.1~~) ~~from Shewanella putrefaciens~~ CN-32 at 2.20 A ~~resolution~~===	+	===CRYSTAL STRUCTURE OF A SIDEROPHORE-INTERACTING PROTEIN (SPUTCN32_0076) FROM SHEWANELLA PUTREFACIENS CN-32 AT 2.20 A RESOLUTION===


	==About this Structure==		==About this Structure==
-	2GPJ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Shewanella_putrefaciens Shewanella putrefaciens~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPJ OCA].	+	2GPJ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPJ OCA].
-	[[Category: ~~Shewanella putrefaciens~~]]	+	[[Category: Bacteria]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
		+	[[Category: Fad-binding protein]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
	[[Category: Joint center for structural genomic]]		[[Category: Joint center for structural genomic]]
	[[Category: Protein structure initiative]]		[[Category: Protein structure initiative]]
-	[[Category: Psi]]	+	[[Category: Psi-2]]
		+	[[Category: Siderophore-interacting protein]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-	[[Category: Zp_00813641 1]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun Nov 16 13~~:03:~~34 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 28 12:10:40 2010''

OCA at 11:03, 16 November 2008

2008-11-16T11:03:36Z

←Older revision		Revision as of 11:03, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	2GPJ is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Shewanella_putrefaciens Shewanella putrefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPJ OCA].	+	2GPJ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Shewanella_putrefaciens Shewanella putrefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPJ OCA].
	[[Category: Shewanella putrefaciens]]		[[Category: Shewanella putrefaciens]]
-	[[Category: Single protein]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
Line 25:		Line 24:
	[[Category: Zp_00813641 1]]		[[Category: Zp_00813641 1]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun ~~Sep 28 19~~:49:36 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 13:03:34 2008''