2hx5 - Revision history

OCA at 06:46, 25 January 2023

2023-01-25T06:46:33Z

←Older revision		Revision as of 06:46, 25 January 2023
Line 3:		Line 3:
	<StructureSection load='2hx5' size='340' side='right'caption='[[2hx5]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='2hx5' size='340' side='right'caption='[[2hx5]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2hx5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Promm Promm~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HX5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HX5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2hx5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Prochlorococcus_marinus_str._MIT_9313 Prochlorococcus marinus str. MIT 9313]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HX5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HX5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ETX:2-ETHOXYETHANOL'>ETX</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ETX:2-ETHOXYETHANOL'>ETX</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~</td></tr>~~	+
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_895880.1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=74547 PROMM])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hx5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hx5 OCA], [https://pdbe.org/2hx5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hx5 RCSB], [https://www.ebi.ac.uk/pdbsum/2hx5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hx5 ProSAT], [https://www.topsan.org/Proteins/JCSG/2hx5 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hx5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hx5 OCA], [https://pdbe.org/2hx5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hx5 RCSB], [https://www.ebi.ac.uk/pdbsum/2hx5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hx5 ProSAT], [https://www.topsan.org/Proteins/JCSG/2hx5 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/DNCH_PROMM DNCH_PROMM]] Catalyzes the hydrolysis of 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA) to 1,4-dihydroxy-2-naphthoate (DHNA), a reaction involved in phylloquinone (vitamin K1) biosynthesis.[HAMAP-Rule:MF_02101]	+	[https://www.uniprot.org/uniprot/DNCH_PROMM DNCH_PROMM] Catalyzes the hydrolysis of 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA) to 1,4-dihydroxy-2-naphthoate (DHNA), a reaction involved in phylloquinone (vitamin K1) biosynthesis.[HAMAP-Rule:MF_02101]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Promm]]~~	+	[[Category: Prochlorococcus marinus str. MIT 9313]]
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Jcsg]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Thioesterase/thiol ester dehydrase-isomerase fold~~]]	+

OCA at 07:23, 24 March 2021

2021-03-24T07:23:36Z

←Older revision		Revision as of 07:23, 24 March 2021
Line 1:		Line 1:

	==Crystal structure of a putative thioesterase (pmt_2055) from prochlorococcus marinus str. mit 9313 at 1.50 A resolution==		==Crystal structure of a putative thioesterase (pmt_2055) from prochlorococcus marinus str. mit 9313 at 1.50 A resolution==
-	<StructureSection load='2hx5' size='340' side='right' caption='[[2hx5]], [[Resolution\|resolution]] 1.50Å' scene=''>	+	<StructureSection load='2hx5' size='340' side='right'caption='[[2hx5]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2hx5]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Promm Promm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HX5 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2HX5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2hx5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Promm Promm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HX5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HX5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ETX:2-ETHOXYETHANOL'>ETX</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ETX:2-ETHOXYETHANOL'>ETX</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_895880.1 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=74547 PROMM])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_895880.1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=74547 PROMM])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2hx5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hx5 OCA], [~~http~~://pdbe.org/2hx5 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2hx5 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2hx5 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2hx5 ProSAT], [~~http~~://www.topsan.org/Proteins/JCSG/2hx5 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hx5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hx5 OCA], [https://pdbe.org/2hx5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hx5 RCSB], [https://www.ebi.ac.uk/pdbsum/2hx5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hx5 ProSAT], [https://www.topsan.org/Proteins/JCSG/2hx5 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/DNCH_PROMM DNCH_PROMM]] Catalyzes the hydrolysis of 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA) to 1,4-dihydroxy-2-naphthoate (DHNA), a reaction involved in phylloquinone (vitamin K1) biosynthesis.[HAMAP-Rule:MF_02101]	+	[[https://www.uniprot.org/uniprot/DNCH_PROMM DNCH_PROMM]] Catalyzes the hydrolysis of 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA) to 1,4-dihydroxy-2-naphthoate (DHNA), a reaction involved in phylloquinone (vitamin K1) biosynthesis.[HAMAP-Rule:MF_02101]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hx/2hx5_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hx/2hx5_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 23:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Promm]]		[[Category: Promm]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 08:18, 18 October 2017

2017-10-18T08:18:39Z

←Older revision		Revision as of 08:18, 18 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of a putative thioesterase (pmt_2055) from prochlorococcus marinus str. mit 9313 at 1.50 A resolution==		==Crystal structure of a putative thioesterase (pmt_2055) from prochlorococcus marinus str. mit 9313 at 1.50 A resolution==
	<StructureSection load='2hx5' size='340' side='right' caption='[[2hx5]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='2hx5' size='340' side='right' caption='[[2hx5]], [[Resolution\|resolution]] 1.50Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_895880.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=74547 PROMM])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_895880.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=74547 PROMM])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hx5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hx5 OCA], [http://pdbe.org/2hx5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2hx5 RCSB], [http://www.ebi.ac.uk/pdbsum/2hx5 PDBsum], [http://www.topsan.org/Proteins/JCSG/2hx5 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hx5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hx5 OCA], [http://pdbe.org/2hx5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2hx5 RCSB], [http://www.ebi.ac.uk/pdbsum/2hx5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2hx5 ProSAT], [http://www.topsan.org/Proteins/JCSG/2hx5 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 03:02, 8 February 2016

2016-02-08T03:02:27Z

←Older revision		Revision as of 03:02, 8 February 2016
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hx5 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 07:14, 10 September 2015

2015-09-10T07:14:58Z

←Older revision		Revision as of 07:14, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2hx5' size='340' side='right' caption='[[2hx5]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='2hx5' size='340' side='right' caption='[[2hx5]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2hx5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Prochlorococcus_marinus Prochlorococcus marinus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HX5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HX5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2hx5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Promm Promm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HX5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HX5 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ETX:2-ETHOXYETHANOL'>ETX</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ETX:2-ETHOXYETHANOL'>ETX</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_895880.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~1219 Prochlorococcus marinus~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_895880.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=74547 PROMM])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hx5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hx5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2hx5 RCSB], [http://www.ebi.ac.uk/pdbsum/2hx5 PDBsum], [http://www.topsan.org/Proteins/JCSG/2hx5 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hx5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hx5 OCA], [http://pdbe.org/2hx5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2hx5 RCSB], [http://www.ebi.ac.uk/pdbsum/2hx5 PDBsum], [http://www.topsan.org/Proteins/JCSG/2hx5 TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/DNCH_PROMM DNCH_PROMM]] Catalyzes the hydrolysis of 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA) to 1,4-dihydroxy-2-naphthoate (DHNA), a reaction involved in phylloquinone (vitamin K1) biosynthesis.[HAMAP-Rule:MF_02101]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Prochlorococcus marinus~~]]	+	[[Category: Promm]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 08:31, 16 January 2015

2015-01-16T08:31:42Z

←Older revision		Revision as of 08:31, 16 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2hx5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Prochlorococcus_marinus Prochlorococcus marinus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HX5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HX5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2hx5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Prochlorococcus_marinus Prochlorococcus marinus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HX5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HX5 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ETX:2-ETHOXYETHANOL'>ETX</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ETX:2-ETHOXYETHANOL'>ETX</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_895880.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1219 Prochlorococcus marinus])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_895880.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1219 Prochlorococcus marinus])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hx5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hx5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2hx5 RCSB], [http://www.ebi.ac.uk/pdbsum/2hx5 PDBsum], [http://www.topsan.org/Proteins/JCSG/2hx5 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hx5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hx5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2hx5 RCSB], [http://www.ebi.ac.uk/pdbsum/2hx5 PDBsum], [http://www.topsan.org/Proteins/JCSG/2hx5 TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Prochlorococcus marinus]]		[[Category: Prochlorococcus marinus]]
-	[[Category: ~~JCSG, Joint Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
-	[[Category: ~~Joint center for structural genomic]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi-2]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Thioesterase/thiol ester dehydrase-isomerase fold]]		[[Category: Thioesterase/thiol ester dehydrase-isomerase fold]]

OCA at 08:10, 30 September 2014

2014-09-30T08:10:44Z

←Older revision		Revision as of 08:10, 30 September 2014
Line 1:		Line 1:
-	~~[[Image:2hx5.png\|left\|200px]]~~	+	==Crystal structure of a putative thioesterase (pmt_2055) from prochlorococcus marinus str. mit 9313 at 1.50 A resolution==
-		+	<StructureSection load='2hx5' size='340' side='right' caption='[[2hx5]], [[Resolution\|resolution]] 1.50Å' scene=''>
-	~~{{STRUCTURE_2hx5\| PDB=2hx5 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2hx5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Prochlorococcus_marinus Prochlorococcus marinus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HX5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HX5 FirstGlance]. <br>
-	===Crystal structure of a putative thioesterase (pmt_2055) from prochlorococcus marinus str. mit 9313 at 1.50 A resolution===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ETX:2-ETHOXYETHANOL'>ETX</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_895880.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1219 Prochlorococcus marinus])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hx5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hx5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2hx5 RCSB], [http://www.ebi.ac.uk/pdbsum/2hx5 PDBsum], [http://www.topsan.org/Proteins/JCSG/2hx5 TOPSAN]</span></td></tr>
-	[[2hx5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Prochlorococcus_marinus Prochlorococcus marinus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HX5 OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hx/2hx5_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Prochlorococcus marinus]]		[[Category: Prochlorococcus marinus]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]

OCA at 13:05, 30 January 2013

2013-01-30T13:05:52Z

←Older revision		Revision as of 13:05, 30 January 2013
Line 1:		Line 1:
	[[Image:2hx5.png\|left\|200px]]		[[Image:2hx5.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2hx5", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2hx5\| PDB=2hx5 \| SCENE= }}		{{STRUCTURE_2hx5\| PDB=2hx5 \| SCENE= }}

Line 13:		Line 7:

	==About this Structure==		==About this Structure==
-	[[2hx5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Prochlorococcus_marinus_str.~~ Prochlorococcus marinus ~~str.~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HX5 OCA].	+	[[2hx5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Prochlorococcus_marinus Prochlorococcus marinus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HX5 OCA].
-	[[Category: Prochlorococcus marinus ~~str.~~]]	+	[[Category: Prochlorococcus marinus]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
		+	[[Category: Hydrolase]]
		+	[[Category: Jcsg]]
		+	[[Category: Joint center for structural genomic]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-2]]
		+	[[Category: Structural genomic]]
		+	[[Category: Thioesterase/thiol ester dehydrase-isomerase fold]]

OCA: Protected "2hx5" [edit=sysop:move=sysop]

2011-03-23T05:58:31Z

Protected "2hx5" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:58, 23 March 2011

OCA at 05:58, 23 March 2011

2011-03-23T05:58:29Z

←Older revision		Revision as of 05:58, 23 March 2011
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2hx5.png\|left\|200px]]		[[Image:2hx5.png\|left\|200px]]

Line 10:		Line 9:
	{{STRUCTURE_2hx5\| PDB=2hx5 \| SCENE= }}		{{STRUCTURE_2hx5\| PDB=2hx5 \| SCENE= }}

-	===Crystal structure of putative thioesterase from ~~Prochlorococcus~~ marinus ~~MIT9313~~ at 1.50 A resolution===	+	===Crystal structure of a putative thioesterase (pmt_2055) from prochlorococcus marinus str. mit 9313 at 1.50 A resolution===


	==About this Structure==		==About this Structure==
-	~~2HX5~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Prochlorococcus_marinus~~ Prochlorococcus marinus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HX5 OCA].	+	[[2hx5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Prochlorococcus_marinus_str. Prochlorococcus marinus str.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HX5 OCA].
-	[[Category: Prochlorococcus marinus]]	+	[[Category: Prochlorococcus marinus str.]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
-	[[Category: Hypothetical protein]]
-	[[Category: Jcsg]]
-	[[Category: Joint center for structural genomic]]
-	[[Category: Np_895880 1]]
-	[[Category: Protein structure initiative]]
-	[[Category: Psi]]
-	[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:33:27 2008''