2i49 - Revision history

OCA at 10:05, 30 August 2023

2023-08-30T10:05:57Z

←Older revision		Revision as of 10:05, 30 August 2023
Line 3:		Line 3:
	<StructureSection load='2i49' size='340' side='right'caption='[[2i49]], [[Resolution\|resolution]] 1.35Å' scene=''>		<StructureSection load='2i49' size='340' side='right'caption='[[2i49]], [[Resolution\|resolution]] 1.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2i49]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Aphanocapsa_sp~~.~~_(strain_n-1) Aphanocapsa~~ sp. ~~(strain n-1)~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I49 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I49 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2i49]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803 Synechocystis sp. PCC 6803]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I49 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I49 FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[2i48\|2i48]], [[2i4b\|2i4b]], [[2i4c\|2i4c]]</div></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.35Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">cmpA ([https://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=1148 Aphanocapsa sp. (strain N-1)])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i49 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i49 OCA], [https://pdbe.org/2i49 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i49 RCSB], [https://www.ebi.ac.uk/pdbsum/2i49 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i49 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i49 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i49 OCA], [https://pdbe.org/2i49 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i49 RCSB], [https://www.ebi.ac.uk/pdbsum/2i49 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i49 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/CMPA_SYNY3 CMPA_SYNY3]] Part of the ABC transporter complex CmpABCD involved in bicarbonate transport. Binds bicarbonate with high affinity (By similarity).	+	[https://www.uniprot.org/uniprot/CMPA_SYNY3 CMPA_SYNY3] Part of the ABC transporter complex CmpABCD involved in bicarbonate transport. Binds bicarbonate with high affinity (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Koropatkin, N M~~]]	+	[[Category: Synechocystis sp. PCC 6803]]
-	[[Category: ~~Pakrasi, H B~~]]	+	[[Category: Koropatkin NM]]
-	[[Category: ~~Smith, T J~~]]	+	[[Category: Pakrasi HB]]
-	[[Category: ~~Abc transporter]]~~	+	[[Category: Smith TJ]]
-	~~[[Category: Alpha-beta protein]]~~	+
-	~~[[Category: Bicarbonate-binding protein]]~~	+
-	~~[[Category: C-clamp]]~~	+
-	~~[[Category: Periplasmic solute-binding protein]]~~	+
-	~~[[Category: Transport protein~~]]	+

OCA at 07:27, 24 March 2021

2021-03-24T07:27:31Z

←Older revision		Revision as of 07:27, 24 March 2021
Line 1:		Line 1:

	==Crystal structure of apo form of Bicarbonate Transport Protein CmpA from Synechocystis sp. PCC 6803==		==Crystal structure of apo form of Bicarbonate Transport Protein CmpA from Synechocystis sp. PCC 6803==
-	<StructureSection load='2i49' size='340' side='right' caption='[[2i49]], [[Resolution\|resolution]] 1.35Å' scene=''>	+	<StructureSection load='2i49' size='340' side='right'caption='[[2i49]], [[Resolution\|resolution]] 1.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2i49]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Aphanocapsa_sp._(strain_n-1) Aphanocapsa sp. (strain n-1)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I49 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2I49 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2i49]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aphanocapsa_sp._(strain_n-1) Aphanocapsa sp. (strain n-1)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I49 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I49 FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2i48\|2i48]], [[2i4b\|2i4b]], [[2i4c\|2i4c]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2i48\|2i48]], [[2i4b\|2i4b]], [[2i4c\|2i4c]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cmpA ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1148 Aphanocapsa sp. (strain N-1)])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cmpA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1148 Aphanocapsa sp. (strain N-1)])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2i49 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i49 OCA], [~~http~~://pdbe.org/2i49 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2i49 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2i49 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2i49 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i49 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i49 OCA], [https://pdbe.org/2i49 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i49 RCSB], [https://www.ebi.ac.uk/pdbsum/2i49 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i49 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/CMPA_SYNY3 CMPA_SYNY3]] Part of the ABC transporter complex CmpABCD involved in bicarbonate transport. Binds bicarbonate with high affinity (By similarity).	+	[[https://www.uniprot.org/uniprot/CMPA_SYNY3 CMPA_SYNY3]] Part of the ABC transporter complex CmpABCD involved in bicarbonate transport. Binds bicarbonate with high affinity (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Koropatkin, N M]]		[[Category: Koropatkin, N M]]
	[[Category: Pakrasi, H B]]		[[Category: Pakrasi, H B]]

OCA at 08:21, 4 July 2018

2018-07-04T08:21:47Z

←Older revision		Revision as of 08:21, 4 July 2018
Line 1:		Line 1:
		+
	==Crystal structure of apo form of Bicarbonate Transport Protein CmpA from Synechocystis sp. PCC 6803==		==Crystal structure of apo form of Bicarbonate Transport Protein CmpA from Synechocystis sp. PCC 6803==
	<StructureSection load='2i49' size='340' side='right' caption='[[2i49]], [[Resolution\|resolution]] 1.35Å' scene=''>		<StructureSection load='2i49' size='340' side='right' caption='[[2i49]], [[Resolution\|resolution]] 1.35Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2i48\|2i48]], [[2i4b\|2i4b]], [[2i4c\|2i4c]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2i48\|2i48]], [[2i4b\|2i4b]], [[2i4c\|2i4c]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cmpA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1148 Aphanocapsa sp. (strain N-1)])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cmpA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1148 Aphanocapsa sp. (strain N-1)])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2i49 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i49 OCA], [http://pdbe.org/2i49 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2i49 RCSB], [http://www.ebi.ac.uk/pdbsum/2i49 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2i49 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i49 OCA], [http://pdbe.org/2i49 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2i49 RCSB], [http://www.ebi.ac.uk/pdbsum/2i49 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2i49 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i4/2i49_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i4/2i49_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 17:16, 9 February 2016

2016-02-09T17:16:16Z

←Older revision		Revision as of 17:16, 9 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i49 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 00:25, 11 September 2015

2015-09-11T00:25:22Z

←Older revision		Revision as of 00:25, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2i49' size='340' side='right' caption='[[2i49]], [[Resolution\|resolution]] 1.35Å' scene=''>		<StructureSection load='2i49' size='340' side='right' caption='[[2i49]], [[Resolution\|resolution]] 1.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2i49]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Synechocystis_sp~~. ~~Synechocystis~~ sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I49 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2I49 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2i49]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aphanocapsa_sp._(strain_n-1) Aphanocapsa sp. (strain n-1)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I49 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2I49 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2i48\|2i48]], [[2i4b\|2i4b]], [[2i4c\|2i4c]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2i48\|2i48]], [[2i4b\|2i4b]], [[2i4c\|2i4c]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cmpA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~1143 Synechocystis~~ sp.])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cmpA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1148 Aphanocapsa sp. (strain N-1)])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2i49 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i49 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2i49 RCSB], [http://www.ebi.ac.uk/pdbsum/2i49 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2i49 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i49 OCA], [http://pdbe.org/2i49 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2i49 RCSB], [http://www.ebi.ac.uk/pdbsum/2i49 PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/CMPA_SYNY3 CMPA_SYNY3]] Part of the ABC transporter complex CmpABCD involved in bicarbonate transport. Binds bicarbonate with high affinity (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2i49" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Synechocystis sp]]
	[[Category: Koropatkin, N M]]		[[Category: Koropatkin, N M]]
	[[Category: Pakrasi, H B]]		[[Category: Pakrasi, H B]]

OCA at 08:25, 16 January 2015

2015-01-16T08:25:58Z

←Older revision		Revision as of 08:25, 16 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2i49]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I49 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2I49 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2i49]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I49 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2I49 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2i48\|2i48]], [[2i4b\|2i4b]], [[2i4c\|2i4c]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2i48\|2i48]], [[2i4b\|2i4b]], [[2i4c\|2i4c]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cmpA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1143 Synechocystis sp.])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cmpA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1143 Synechocystis sp.])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2i49 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i49 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2i49 RCSB], [http://www.ebi.ac.uk/pdbsum/2i49 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2i49 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i49 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2i49 RCSB], [http://www.ebi.ac.uk/pdbsum/2i49 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Synechocystis sp.]]	+	[[Category: Synechocystis sp]]
-	[[Category: Koropatkin, N M.]]	+	[[Category: Koropatkin, N M]]
-	[[Category: Pakrasi, H B.]]	+	[[Category: Pakrasi, H B]]
-	[[Category: Smith, T J.]]	+	[[Category: Smith, T J]]
	[[Category: Abc transporter]]		[[Category: Abc transporter]]
	[[Category: Alpha-beta protein]]		[[Category: Alpha-beta protein]]

OCA at 09:36, 30 September 2014

2014-09-30T09:36:46Z

←Older revision		Revision as of 09:36, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2i49.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of apo form of Bicarbonate Transport Protein CmpA from Synechocystis sp. PCC 6803==
		+	<StructureSection load='2i49' size='340' side='right' caption='[[2i49]], [[Resolution\|resolution]] 1.35Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2i49]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I49 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2I49 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2i48\|2i48]], [[2i4b\|2i4b]], [[2i4c\|2i4c]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cmpA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1143 Synechocystis sp.])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2i49 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i49 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2i49 RCSB], [http://www.ebi.ac.uk/pdbsum/2i49 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i4/2i49_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Cyanobacteria, blue-green algae, are the most abundant autotrophs in aquatic environments and form the base of the food chain by fixing carbon and nitrogen into cellular biomass. To compensate for the low selectivity of Rubisco for CO2 over O2, cyanobacteria have developed highly efficient CO2-concentrating machinery of which the ABC transport system CmpABCD from Synechocystis PCC 6803 is one component. Here, we have described the structure of the bicarbonate-binding protein CmpA in the absence and presence of bicarbonate and carbonic acid. CmpA is highly homologous to the nitrate transport protein NrtA. CmpA binds carbonic acid at the entrance to the ligand-binding pocket, whereas bicarbonate binds in nearly an identical location compared with nitrate binding to NrtA. Unexpectedly, bicarbonate binding is accompanied by a metal ion, identified as Ca2+ via inductively coupled plasma optical emission spectrometry. The binding of bicarbonate and metal appears to be highly cooperative and suggests that CmpA may co-transport bicarbonate and calcium or that calcium acts a cofactor in bicarbonate transport.

-	~~{{STRUCTURE_2i49\| PDB=2i49 \| SCENE= }}~~	+	The structure of a cyanobacterial bicarbonate transport protein, CmpA.,Koropatkin NM, Koppenaal DW, Pakrasi HB, Smith TJ J Biol Chem. 2007 Jan 26;282(4):2606-14. Epub 2006 Nov 22. PMID:17121816<ref>PMID:17121816</ref>

-	~~===Crystal structure~~ of ~~apo form~~ of ~~Bicarbonate Transport Protein CmpA from Synechocystis sp~~. ~~PCC 6803===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17121816}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2i49]] is a 1 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I49 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:017121816<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Synechocystis sp.]]		[[Category: Synechocystis sp.]]
	[[Category: Koropatkin, N M.]]		[[Category: Koropatkin, N M.]]

OCA: Protected "2i49" [edit=sysop:move=sysop]

2013-01-07T11:52:09Z

Protected "2i49" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:52, 7 January 2013

OCA at 11:52, 7 January 2013

2013-01-07T11:52:05Z

←Older revision		Revision as of 11:52, 7 January 2013
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-	{{Seed}}
	[[Image:2i49.png\|left\|200px]]		[[Image:2i49.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2i49", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2i49\| PDB=2i49 \| SCENE= }}		{{STRUCTURE_2i49\| PDB=2i49 \| SCENE= }}

	===Crystal structure of apo form of Bicarbonate Transport Protein CmpA from Synechocystis sp. PCC 6803===		===Crystal structure of apo form of Bicarbonate Transport Protein CmpA from Synechocystis sp. PCC 6803===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17121816}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17121816 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_17121816}}		{{ABSTRACT_PUBMED_17121816}}

	==About this Structure==		==About this Structure==
-	~~2I49~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I49 OCA].	+	[[2i49]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I49 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17121816~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017121816</ref><references group="xtra"/>
	[[Category: Synechocystis sp.]]		[[Category: Synechocystis sp.]]
	[[Category: Koropatkin, N M.]]		[[Category: Koropatkin, N M.]]
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	[[Category: C-clamp]]		[[Category: C-clamp]]
	[[Category: Periplasmic solute-binding protein]]		[[Category: Periplasmic solute-binding protein]]
-		+	[[Category: Transport protein]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Tue Feb 17 11:27:12 2009''~~	+

OCA at 09:27, 17 February 2009

2009-02-17T09:27:13Z

←Older revision		Revision as of 09:27, 17 February 2009
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	==About this Structure==		==About this Structure==
-	2I49 is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I49 OCA].	+	2I49 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I49 OCA].

	==Reference==		==Reference==
-	~~The structure of a cyanobacterial bicarbonate transport protein, CmpA., Koropatkin NM, Koppenaal DW, Pakrasi HB, Smith TJ, J Biol Chem. 2007 Jan 26;282(4):2606-14. Epub 2006 Nov 22.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/17121816 17121816]~~	+	<ref group="xtra">PMID:17121816</ref><references group="xtra"/>
-	~~[[Category: Single protein]]~~	+
	[[Category: Synechocystis sp.]]		[[Category: Synechocystis sp.]]
	[[Category: Koropatkin, N M.]]		[[Category: Koropatkin, N M.]]
Line 35:		Line 34:
	[[Category: Periplasmic solute-binding protein]]		[[Category: Periplasmic solute-binding protein]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Jul 28 15~~:32:~~17 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 11:27:12 2009''