2jpo - Revision history

OCA at 08:16, 19 January 2022

2022-01-19T08:16:08Z

←Older revision		Revision as of 08:16, 19 January 2022
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	<StructureSection load='2jpo' size='340' side='right'caption='[[2jpo]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2jpo' size='340' side='right'caption='[[2jpo]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jpo]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Antpo Antpo]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2JPO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jpo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Antpo Antpo]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JPO FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gm0\|1gm0]], [[1two\|1two]], [[1ls8\|1ls8]], [[1qwv\|1qwv]], [[1xfr\|1xfr]], [[1dqe\|1dqe]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1gm0\|1gm0]], [[1two\|1two]], [[1ls8\|1ls8]], [[1qwv\|1qwv]], [[1xfr\|1xfr]], [[1dqe\|1dqe]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2jpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpo OCA], [~~http~~://pdbe.org/2jpo PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2jpo RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2jpo PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2jpo ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpo OCA], [https://pdbe.org/2jpo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jpo RCSB], [https://www.ebi.ac.uk/pdbsum/2jpo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jpo ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/PBP_ANTPO PBP_ANTPO]] This major soluble protein in olfactory sensilla of male moths might serve to solubilize the extremely hydrophobic pheromone molecules and to transport pheromone through the aqueous lymph to receptors located on olfactory cilia.	+	[[https://www.uniprot.org/uniprot/PBP_ANTPO PBP_ANTPO]] This major soluble protein in olfactory sensilla of male moths might serve to solubilize the extremely hydrophobic pheromone molecules and to transport pheromone through the aqueous lymph to receptors located on olfactory cilia.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 07:57, 15 April 2020

2020-04-15T07:57:08Z

←Older revision		Revision as of 07:57, 15 April 2020
Line 1:		Line 1:

	==NMR structure of Antheraea polyphemus pheromone-binding protein 1 at pH 4.5==		==NMR structure of Antheraea polyphemus pheromone-binding protein 1 at pH 4.5==
-	<StructureSection load='2jpo' size='340' side='right' caption='[[2jpo]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='2jpo' size='340' side='right'caption='[[2jpo]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jpo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Antpo Antpo]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPO OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2JPO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jpo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Antpo Antpo]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPO OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2JPO FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gm0\|1gm0]], [[1two\|1two]], [[1ls8\|1ls8]], [[1qwv\|1qwv]], [[1xfr\|1xfr]], [[1dqe\|1dqe]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gm0\|1gm0]], [[1two\|1two]], [[1ls8\|1ls8]], [[1qwv\|1qwv]], [[1xfr\|1xfr]], [[1dqe\|1dqe]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2jpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpo OCA], [http://pdbe.org/2jpo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jpo RCSB], [http://www.ebi.ac.uk/pdbsum/2jpo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jpo ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2jpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpo OCA], [http://pdbe.org/2jpo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jpo RCSB], [http://www.ebi.ac.uk/pdbsum/2jpo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jpo ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 36:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Antpo]]		[[Category: Antpo]]
		+	[[Category: Large Structures]]
	[[Category: Damberger, F F]]		[[Category: Damberger, F F]]
	[[Category: Ishida, Y]]		[[Category: Ishida, Y]]

OCA at 07:00, 11 July 2018

2018-07-11T07:00:52Z

←Older revision		Revision as of 07:00, 11 July 2018
Line 1:		Line 1:
		+
	==NMR structure of Antheraea polyphemus pheromone-binding protein 1 at pH 4.5==		==NMR structure of Antheraea polyphemus pheromone-binding protein 1 at pH 4.5==
	<StructureSection load='2jpo' size='340' side='right' caption='[[2jpo]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2jpo' size='340' side='right' caption='[[2jpo]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2jpo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Antpo Antpo]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JPO FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jpo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Antpo Antpo]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JPO FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gm0\|1gm0]], [[1two\|1two]], [[1ls8\|1ls8]], [[1qwv\|1qwv]], [[1xfr\|1xfr]], [[1dqe\|1dqe]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gm0\|1gm0]], [[1two\|1two]], [[1ls8\|1ls8]], [[1qwv\|1qwv]], [[1xfr\|1xfr]], [[1dqe\|1dqe]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpo OCA], [http://pdbe.org/2jpo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jpo RCSB], [http://www.ebi.ac.uk/pdbsum/2jpo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpo OCA], [http://pdbe.org/2jpo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jpo RCSB], [http://www.ebi.ac.uk/pdbsum/2jpo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jpo ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jp/2jpo_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jp/2jpo_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jpo ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 10:51, 11 September 2015

2015-09-11T10:51:33Z

←Older revision		Revision as of 10:51, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2jpo' size='340' side='right' caption='[[2jpo]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2jpo' size='340' side='right' caption='[[2jpo]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jpo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Antheraea_polyphemus Antheraea polyphemus~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JPO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jpo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Antpo Antpo]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JPO FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gm0\|1gm0]], [[1two\|1two]], [[1ls8\|1ls8]], [[1qwv\|1qwv]], [[1xfr\|1xfr]], [[1dqe\|1dqe]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gm0\|1gm0]], [[1two\|1two]], [[1ls8\|1ls8]], [[1qwv\|1qwv]], [[1xfr\|1xfr]], [[1dqe\|1dqe]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jpo RCSB], [http://www.ebi.ac.uk/pdbsum/2jpo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpo OCA], [http://pdbe.org/2jpo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jpo RCSB], [http://www.ebi.ac.uk/pdbsum/2jpo PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2jpo" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Pheromone binding protein\|Pheromone binding protein]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Antheraea polyphemus~~]]	+	[[Category: Antpo]]
	[[Category: Damberger, F F]]		[[Category: Damberger, F F]]
	[[Category: Ishida, Y]]		[[Category: Ishida, Y]]

OCA at 15:27, 25 December 2014

2014-12-25T15:27:46Z

←Older revision		Revision as of 15:27, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jpo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Antheraea_polyphemus Antheraea polyphemus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JPO FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jpo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Antheraea_polyphemus Antheraea polyphemus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JPO FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gm0\|1gm0]], [[1two\|1two]], [[1ls8\|1ls8]], [[1qwv\|1qwv]], [[1xfr\|1xfr]], [[1dqe\|1dqe]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gm0\|1gm0]], [[1two\|1two]], [[1ls8\|1ls8]], [[1qwv\|1qwv]], [[1xfr\|1xfr]], [[1dqe\|1dqe]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jpo RCSB], [http://www.ebi.ac.uk/pdbsum/2jpo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jpo RCSB], [http://www.ebi.ac.uk/pdbsum/2jpo PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PBP_ANTPO PBP_ANTPO]] This major soluble protein in olfactory sensilla of male moths might serve to solubilize the extremely hydrophobic pheromone molecules and to transport pheromone through the aqueous lymph to receptors located on olfactory cilia.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Antheraea polyphemus]]		[[Category: Antheraea polyphemus]]
-	[[Category: Damberger, F F.]]	+	[[Category: Damberger, F F]]
-	[[Category: Ishida, Y.]]	+	[[Category: Ishida, Y]]
-	[[Category: Leal, W S.]]	+	[[Category: Leal, W S]]
-	[[Category: Wuthrich, K.]]	+	[[Category: Wuthrich, K]]
	[[Category: Helix insertion]]		[[Category: Helix insertion]]
	[[Category: Insect odorant-binding protein]]		[[Category: Insect odorant-binding protein]]
	[[Category: Ph-dependent conformation]]		[[Category: Ph-dependent conformation]]
	[[Category: Transport protein]]		[[Category: Transport protein]]

OCA at 08:35, 3 October 2014

2014-10-03T08:35:51Z

←Older revision		Revision as of 08:35, 3 October 2014
Line 2:		Line 2:
	<StructureSection load='2jpo' size='340' side='right' caption='[[2jpo]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2jpo' size='340' side='right' caption='[[2jpo]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jpo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Antheraea_polyphemus Antheraea polyphemus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPO OCA]. <br>	+	<table><tr><td colspan='2'>[[2jpo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Antheraea_polyphemus Antheraea polyphemus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JPO FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gm0\|1gm0]], [[1two\|1two]], [[1ls8\|1ls8]], [[1qwv\|1qwv]], [[1xfr\|1xfr]], [[1dqe\|1dqe]]</td></tr>		</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gm0\|1gm0]], [[1two\|1two]], [[1ls8\|1ls8]], [[1qwv\|1qwv]], [[1xfr\|1xfr]], [[1dqe\|1dqe]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jpo RCSB], [http://www.ebi.ac.uk/pdbsum/2jpo PDBsum]</span></td></tr>		<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jpo RCSB], [http://www.ebi.ac.uk/pdbsum/2jpo PDBsum]</span></td></tr>
	<table>		<table>
Line 23:		Line 22:
	Structural basis of ligand binding and release in insect pheromone-binding proteins: NMR structure of Antheraea polyphemus PBP1 at pH 4.5.,Damberger FF, Ishida Y, Leal WS, Wuthrich K J Mol Biol. 2007 Nov 2;373(4):811-9. Epub 2007 Aug 17. PMID:17884092<ref>PMID:17884092</ref>		Structural basis of ligand binding and release in insect pheromone-binding proteins: NMR structure of Antheraea polyphemus PBP1 at pH 4.5.,Damberger FF, Ishida Y, Leal WS, Wuthrich K J Mol Biol. 2007 Nov 2;373(4):811-9. Epub 2007 Aug 17. PMID:17884092<ref>PMID:17884092</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==

OCA at 09:44, 1 May 2014

2014-05-01T09:44:37Z

←Older revision		Revision as of 09:44, 1 May 2014
Line 2:		Line 2:
	<StructureSection load='2jpo' size='340' side='right' caption='[[2jpo]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2jpo' size='340' side='right' caption='[[2jpo]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	[[2jpo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Antheraea_polyphemus Antheraea polyphemus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPO OCA]. <br>	+	<table><tr><td colspan='2'>[[2jpo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Antheraea_polyphemus Antheraea polyphemus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPO OCA]. <br>
-	<b>[[Related_structure\|Related:]]</b> [[1gm0\|1gm0]], [[1two\|1two]], [[1ls8\|1ls8]], [[1qwv\|1qwv]], [[1xfr\|1xfr]], [[1dqe\|1dqe]]<br>	+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gm0\|1gm0]], [[1two\|1two]], [[1ls8\|1ls8]], [[1qwv\|1qwv]], [[1xfr\|1xfr]], [[1dqe\|1dqe]]</td></tr>
-	<b>Activity:</b> <span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span><br>	+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
-	<b>Resources:</b> <span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jpo RCSB], [http://www.ebi.ac.uk/pdbsum/2jpo PDBsum]</span><br>	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jpo RCSB], [http://www.ebi.ac.uk/pdbsum/2jpo PDBsum]</span></td></tr>
		+	<table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
-	[[Image:Consurf_key_small.gif\|right]]	+	[[Image:Consurf_key_small.gif\|200px\|right]]
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
Line 16:		Line 17:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
	The NMR structure of the Antheraea polyphemus pheromone-binding protein 1 at pH 4.5, ApolPBP1A, was determined at 20 degrees C. The structure consists of six alpha-helices, which are arranged in a globular fold that encapsulates a central helix alpha7 formed by the C-terminal polypeptide segment 131-142. The 3D arrangement of these helices is anchored by the three disulfide bonds 19-54, 50-108 and 97-117, which were identified by NMR. Superposition of the ApolPBP1A structure with the structure of the homologous pheromone-binding protein of Bombyx mori at pH 4.5, BmorPBPA, yielded an rmsd of 1.7 A calculated for the backbone heavy-atoms N, Calpha and C' of residues 10-142. In contrast, the present ApolPBP1A structure is different from a recently proposed molecular model for a low-pH form of ApolPBP1 that does not contain the central helix alpha7. ApolPBP1 exhibits a pH-dependent transition between two different globular conformations in slow exchange on the NMR chemical shift timescale similar to BmorPBP, suggesting that the two proteins use the same mechanism of ligand binding and ejection. The extensive sequence homology observed for pheromone-binding proteins from moth species further implies that the previously proposed mechanism of ligand ejection involving the insertion of a C-terminal helix into the pheromone-binding site is a general feature of pheromone signaling in moths.		The NMR structure of the Antheraea polyphemus pheromone-binding protein 1 at pH 4.5, ApolPBP1A, was determined at 20 degrees C. The structure consists of six alpha-helices, which are arranged in a globular fold that encapsulates a central helix alpha7 formed by the C-terminal polypeptide segment 131-142. The 3D arrangement of these helices is anchored by the three disulfide bonds 19-54, 50-108 and 97-117, which were identified by NMR. Superposition of the ApolPBP1A structure with the structure of the homologous pheromone-binding protein of Bombyx mori at pH 4.5, BmorPBPA, yielded an rmsd of 1.7 A calculated for the backbone heavy-atoms N, Calpha and C' of residues 10-142. In contrast, the present ApolPBP1A structure is different from a recently proposed molecular model for a low-pH form of ApolPBP1 that does not contain the central helix alpha7. ApolPBP1 exhibits a pH-dependent transition between two different globular conformations in slow exchange on the NMR chemical shift timescale similar to BmorPBP, suggesting that the two proteins use the same mechanism of ligand binding and ejection. The extensive sequence homology observed for pheromone-binding proteins from moth species further implies that the previously proposed mechanism of ligand ejection involving the insertion of a C-terminal helix into the pheromone-binding site is a general feature of pheromone signaling in moths.
Line 22:		Line 24:

	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>		From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 10:05, 30 April 2014

2014-04-30T10:05:48Z

←Older revision		Revision as of 10:05, 30 April 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	[[2jpo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Antheraea_polyphemus Antheraea polyphemus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPO OCA]. <br>		[[2jpo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Antheraea_polyphemus Antheraea polyphemus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPO OCA]. <br>
-	<b>Related:</b> [[1gm0\|1gm0]], [[1two\|1two]], [[1ls8\|1ls8]], [[1qwv\|1qwv]], [[1xfr\|1xfr]], [[1dqe\|1dqe]]<br>	+	<b>[[Related_structure\|Related:]]</b> [[1gm0\|1gm0]], [[1two\|1two]], [[1ls8\|1ls8]], [[1qwv\|1qwv]], [[1xfr\|1xfr]], [[1dqe\|1dqe]]<br>
	<b>Activity:</b> <span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span><br>		<b>Activity:</b> <span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span><br>
		+	<b>Resources:</b> <span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jpo RCSB], [http://www.ebi.ac.uk/pdbsum/2jpo PDBsum]</span><br>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|right]]		[[Image:Consurf_key_small.gif\|right]]

OCA at 08:28, 30 April 2014

2014-04-30T08:28:01Z

←Older revision		Revision as of 08:28, 30 April 2014
Line 1:		Line 1:
-	[[Image:~~2jpo~~.~~png~~\|~~left~~\|~~200px~~]]	+	==NMR structure of Antheraea polyphemus pheromone-binding protein 1 at pH 4.5==
		+	<StructureSection load='2jpo' size='340' side='right' caption='[[2jpo]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	[[2jpo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Antheraea_polyphemus Antheraea polyphemus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPO OCA]. <br>
		+	<b>Related:</b> [[1gm0\|1gm0]], [[1two\|1two]], [[1ls8\|1ls8]], [[1qwv\|1qwv]], [[1xfr\|1xfr]], [[1dqe\|1dqe]]<br>
		+	<b>Activity:</b> <span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span><br>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jp/2jpo_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	== Publication Abstract from PubMed ==
		+	The NMR structure of the Antheraea polyphemus pheromone-binding protein 1 at pH 4.5, ApolPBP1A, was determined at 20 degrees C. The structure consists of six alpha-helices, which are arranged in a globular fold that encapsulates a central helix alpha7 formed by the C-terminal polypeptide segment 131-142. The 3D arrangement of these helices is anchored by the three disulfide bonds 19-54, 50-108 and 97-117, which were identified by NMR. Superposition of the ApolPBP1A structure with the structure of the homologous pheromone-binding protein of Bombyx mori at pH 4.5, BmorPBPA, yielded an rmsd of 1.7 A calculated for the backbone heavy-atoms N, Calpha and C' of residues 10-142. In contrast, the present ApolPBP1A structure is different from a recently proposed molecular model for a low-pH form of ApolPBP1 that does not contain the central helix alpha7. ApolPBP1 exhibits a pH-dependent transition between two different globular conformations in slow exchange on the NMR chemical shift timescale similar to BmorPBP, suggesting that the two proteins use the same mechanism of ligand binding and ejection. The extensive sequence homology observed for pheromone-binding proteins from moth species further implies that the previously proposed mechanism of ligand ejection involving the insertion of a C-terminal helix into the pheromone-binding site is a general feature of pheromone signaling in moths.

-	<!--	+	Structural basis of ligand binding and release in insect pheromone-binding proteins: NMR structure of Antheraea polyphemus PBP1 at pH 4.5.,Damberger FF, Ishida Y, Leal WS, Wuthrich K J Mol Biol. 2007 Nov 2;373(4):811-9. Epub 2007 Aug 17. PMID:17884092<ref>PMID:17884092</ref>
-	~~The line below this paragraph~~, ~~containing "STRUCTURE_2jpo"~~, ~~creates the "Structure Box" on the page~~.	+
-	~~You may change the PDB parameter~~ (~~which sets the PDB file loaded into the applet~~)	+
-	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~	+
-	~~or leave the SCENE parameter empty for the default display.~~	+
-	-->	+
-	~~{{STRUCTURE_2jpo\| PDB=2jpo \| SCENE= }}~~	+

-	~~===NMR structure~~ of ~~Antheraea polyphemus pheromone-binding protein 1 at pH 4.5===~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	== References ==
-		+	<references/>
-	~~<!--~~	+	__TOC__
-	~~The line below this paragraph, {{ABSTRACT_PUBMED_17884092}}, adds~~ the ~~Publication Abstract to the page~~	+	</StructureSection>
-	~~(as it appears on PubMed at http://www~~.~~pubmed~~.~~gov), where 17884092 is the PubMed ID number~~.	+
-	-->	+
-	~~{{ABSTRACT_PUBMED_17884092}}~~	+
-		+
-	==~~About this Structure~~==	+
-	~~[[2jpo]] is a 1 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Antheraea_polyphemus Antheraea polyphemus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPO OCA].~~	+
-		+
-	~~==Reference==~~	+
-	<ref group="xtra">PMID:017884092</ref><ref group="xtra">PMID:012522306</ref><ref group="xtra">PMID:012051947</ref><ref group="xtra">PMID:009367762</ref><ref group="xtra">PMID:008914272</ref><references group="xtra"/>	+
	[[Category: Antheraea polyphemus]]		[[Category: Antheraea polyphemus]]
	[[Category: Damberger, F F.]]		[[Category: Damberger, F F.]]

OCA at 07:27, 30 October 2011

2011-10-30T07:27:53Z

←Older revision		Revision as of 07:27, 30 October 2011
Line 22:		Line 22:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17884092~~</ref><ref group="xtra">PMID:~~12522306~~</ref><ref group="xtra">PMID:~~12051947~~</ref><ref group="xtra">PMID:~~9367762~~</ref><ref group="xtra">PMID:~~8914272~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017884092</ref><ref group="xtra">PMID:012522306</ref><ref group="xtra">PMID:012051947</ref><ref group="xtra">PMID:009367762</ref><ref group="xtra">PMID:008914272</ref><references group="xtra"/>
	[[Category: Antheraea polyphemus]]		[[Category: Antheraea polyphemus]]
	[[Category: Damberger, F F.]]		[[Category: Damberger, F F.]]