2jr0 - Revision history

OCA at 10:11, 20 December 2023

2023-12-20T10:11:37Z

←Older revision		Revision as of 10:11, 20 December 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jr0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JR0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JR0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jr0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JR0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JR0 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jr0 OCA], [https://pdbe.org/2jr0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jr0 RCSB], [https://www.ebi.ac.uk/pdbsum/2jr0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jr0 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jr0 OCA], [https://pdbe.org/2jr0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jr0 RCSB], [https://www.ebi.ac.uk/pdbsum/2jr0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jr0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 08:36, 14 June 2023

2023-06-14T08:36:10Z

←Older revision		Revision as of 08:36, 14 June 2023
Line 1:		Line 1:

	==Solution structure of NusB from Aquifex Aeolicus==		==Solution structure of NusB from Aquifex Aeolicus==
-	<StructureSection load='2jr0' size='340' side='right'caption='[[2jr0~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='2jr0' size='340' side='right'caption='[[2jr0]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jr0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex~~ aeolicus~~" huber and stetter 2001~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JR0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JR0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jr0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JR0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JR0 FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 "Aquifex aeolicus" Huber and Stetter 2001])</td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jr0 OCA], [https://pdbe.org/2jr0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jr0 RCSB], [https://www.ebi.ac.uk/pdbsum/2jr0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jr0 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jr0 OCA], [https://pdbe.org/2jr0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jr0 RCSB], [https://www.ebi.ac.uk/pdbsum/2jr0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jr0 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/NUSB_AQUAE NUSB_AQUAE]] Involved in the transcription termination process (By similarity).	+	[https://www.uniprot.org/uniprot/NUSB_AQUAE NUSB_AQUAE] Involved in the transcription termination process (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 31:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Aquifex aeolicus huber and stetter 2001]]
-	[[Category: Large Structures]]
-	[[Category: Altieri, A S]]
-	[[Category: Byrd, R A]]
-	[[Category: Das, R]]
-	[[Category: Li, J]]
-	[[Category: Loss, S]]
-	[[Category: Tarasov, S]]
-	[[Category: Waugh, D S]]
-	[[Category: Wingfield, P]]
-	[[Category: Antiterminator]]
	[[Category: Aquifex aeolicus]]		[[Category: Aquifex aeolicus]]
-	[[Category: ~~Nusb~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Transcription~~]]	+	[[Category: Altieri AS]]
		+	[[Category: Byrd RA]]
		+	[[Category: Das R]]
		+	[[Category: Li J]]
		+	[[Category: Loss S]]
		+	[[Category: Tarasov S]]
		+	[[Category: Waugh DS]]
		+	[[Category: Wingfield P]]

OCA at 13:24, 24 November 2021

2021-11-24T13:24:30Z

←Older revision		Revision as of 13:24, 24 November 2021
Line 3:		Line 3:
	<StructureSection load='2jr0' size='340' side='right'caption='[[2jr0]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2jr0' size='340' side='right'caption='[[2jr0]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jr0]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JR0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2JR0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jr0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JR0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JR0 FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusB ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 "Aquifex aeolicus" Huber and Stetter 2001])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 "Aquifex aeolicus" Huber and Stetter 2001])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2jr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jr0 OCA], [~~http~~://pdbe.org/2jr0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2jr0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2jr0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2jr0 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jr0 OCA], [https://pdbe.org/2jr0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jr0 RCSB], [https://www.ebi.ac.uk/pdbsum/2jr0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jr0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/NUSB_AQUAE NUSB_AQUAE]] Involved in the transcription termination process (By similarity).	+	[[https://www.uniprot.org/uniprot/NUSB_AQUAE NUSB_AQUAE]] Involved in the transcription termination process (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 06:48, 19 February 2020

2020-02-19T06:48:41Z

←Older revision		Revision as of 06:48, 19 February 2020
Line 1:		Line 1:

	==Solution structure of NusB from Aquifex Aeolicus==		==Solution structure of NusB from Aquifex Aeolicus==
-	<StructureSection load='2jr0' size='340' side='right' caption='[[2jr0]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='2jr0' size='340' side='right'caption='[[2jr0]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jr0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JR0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JR0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jr0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JR0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JR0 FirstGlance]. <br>
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Aquifex aeolicus huber and stetter 2001]]		[[Category: Aquifex aeolicus huber and stetter 2001]]
		+	[[Category: Large Structures]]
	[[Category: Altieri, A S]]		[[Category: Altieri, A S]]
	[[Category: Byrd, R A]]		[[Category: Byrd, R A]]

OCA at 06:34, 11 July 2018

2018-07-11T06:34:31Z

←Older revision		Revision as of 06:34, 11 July 2018
Line 1:		Line 1:
		+
	==Solution structure of NusB from Aquifex Aeolicus==		==Solution structure of NusB from Aquifex Aeolicus==
	<StructureSection load='2jr0' size='340' side='right' caption='[[2jr0]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2jr0' size='340' side='right' caption='[[2jr0]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2jr0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JR0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JR0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jr0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JR0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JR0 FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 "Aquifex aeolicus" Huber and Stetter 2001])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 "Aquifex aeolicus" Huber and Stetter 2001])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jr0 OCA], [http://pdbe.org/2jr0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jr0 RCSB], [http://www.ebi.ac.uk/pdbsum/2jr0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jr0 OCA], [http://pdbe.org/2jr0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jr0 RCSB], [http://www.ebi.ac.uk/pdbsum/2jr0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jr0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jr/2jr0_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jr/2jr0_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jr0 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:03, 11 September 2015

2015-09-11T09:03:26Z

←Older revision		Revision as of 09:03, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2jr0' size='340' side='right' caption='[[2jr0]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2jr0' size='340' side='right' caption='[[2jr0]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jr0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Aquifex_aeolicus Aquifex~~ aeolicus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JR0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JR0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jr0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JR0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JR0 FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 Aquifex aeolicus])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 "Aquifex aeolicus" Huber and Stetter 2001])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jr0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jr0 RCSB], [http://www.ebi.ac.uk/pdbsum/2jr0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jr0 OCA], [http://pdbe.org/2jr0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jr0 RCSB], [http://www.ebi.ac.uk/pdbsum/2jr0 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2jr0" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Aquifex aeolicus]]	+	[[Category: Aquifex aeolicus huber and stetter 2001]]
	[[Category: Altieri, A S]]		[[Category: Altieri, A S]]
	[[Category: Byrd, R A]]		[[Category: Byrd, R A]]
Line 40:		Line 41:
	[[Category: Wingfield, P]]		[[Category: Wingfield, P]]
	[[Category: Antiterminator]]		[[Category: Antiterminator]]
		+	[[Category: Aquifex aeolicus]]
	[[Category: Nusb]]		[[Category: Nusb]]
	[[Category: Transcription]]		[[Category: Transcription]]

OCA at 14:13, 25 December 2014

2014-12-25T14:13:30Z

←Older revision		Revision as of 14:13, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jr0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JR0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JR0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jr0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JR0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JR0 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 Aquifex aeolicus])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 Aquifex aeolicus])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jr0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jr0 RCSB], [http://www.ebi.ac.uk/pdbsum/2jr0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jr0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jr0 RCSB], [http://www.ebi.ac.uk/pdbsum/2jr0 PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NUSB_AQUAE NUSB_AQUAE]] Involved in the transcription termination process (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Aquifex aeolicus]]		[[Category: Aquifex aeolicus]]
-	[[Category: Altieri, A S.]]	+	[[Category: Altieri, A S]]
-	[[Category: Byrd, R A.]]	+	[[Category: Byrd, R A]]
-	[[Category: Das, R.]]	+	[[Category: Das, R]]
-	[[Category: Li, J.]]	+	[[Category: Li, J]]
-	[[Category: Loss, S.]]	+	[[Category: Loss, S]]
-	[[Category: Tarasov, S.]]	+	[[Category: Tarasov, S]]
-	[[Category: Waugh, D S.]]	+	[[Category: Waugh, D S]]
-	[[Category: Wingfield, P.]]	+	[[Category: Wingfield, P]]
	[[Category: Antiterminator]]		[[Category: Antiterminator]]
-	[[Category: Aquifex aeolicus]]
	[[Category: Nusb]]		[[Category: Nusb]]
	[[Category: Transcription]]		[[Category: Transcription]]

OCA at 09:17, 30 September 2014

2014-09-30T09:17:07Z

←Older revision		Revision as of 09:17, 30 September 2014
Line 1:		Line 1:
-	[[~~Image~~:2jr0.~~png\|left~~\|200px]]	+	==Solution structure of NusB from Aquifex Aeolicus==
		+	<StructureSection load='2jr0' size='340' side='right' caption='[[2jr0]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2jr0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JR0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JR0 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nusB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 Aquifex aeolicus])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jr0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jr0 RCSB], [http://www.ebi.ac.uk/pdbsum/2jr0 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jr/2jr0_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	In prokaryotic transcription regulation, several host factors form a complex with RNA polymerase and the nascent mRNA. As part of a process known as antitermination, two of these host factors, NusB and NusE, bind to form a heterodimer, which interacts with a specific boxA site on the RNA. The NusB/NusE/boxA RNA ternary complex interacts with the RNA polymerase transcription complex, stabilizing it and allowing transcription past premature termination points. The NusB protein also binds boxA RNA individually and retains all specificity for boxA. However, NusE increases the affinity of RNA to NusB in the ternary complex, which contributes to efficient antitermination. To understand the molecular mechanism of the process, we have determined the structure of NusB from the thermophilic bacterium Aquifex aeolicus and studied the interaction of NusB and NusE. We characterize this binding interaction using NMR, isothermal titration calorimetry, gel filtration, and analytical ultracentrifugation. The binding site of NusE on NusB was determined using NMR chemical shift perturbation studies. We have also determined the NusE binding site in the ternary Escherichia coli NusB/NusE/boxA RNA complex and show that it is very similar to that in the NusB/NusE complex. There is one loop of residues (from 113 to 118 in NusB) affected by NusE binding in the ternary complex but not in the binary complex. This difference may be correlated to an increase in binding affinity of RNA for the NusB/NusE complex.

-	~~{{STRUCTURE_2jr0\| PDB=2jr0 \| SCENE= }}~~	+	Structural biophysics of the NusB:NusE antitermination complex.,Das R, Loss S, Li J, Waugh DS, Tarasov S, Wingfield PT, Byrd RA, Altieri AS J Mol Biol. 2008 Feb 22;376(3):705-20. Epub 2007 Nov 17. PMID:18177898<ref>PMID:18177898</ref>

-	~~===Solution structure~~ of ~~NusB from Aquifex Aeolicus===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18177898}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2jr0]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Aquifex_aeolicus Aquifex aeolicus]~~. ~~Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2JR0 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:018177898<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Aquifex aeolicus]]		[[Category: Aquifex aeolicus]]
	[[Category: Altieri, A S.]]		[[Category: Altieri, A S.]]

OCA: Protected "2jr0" [edit=sysop:move=sysop]

2013-01-07T14:11:42Z

Protected "2jr0" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:11, 7 January 2013

OCA at 14:11, 7 January 2013

2013-01-07T14:11:38Z

←Older revision		Revision as of 14:11, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2jr0.png\|left\|200px]]		[[Image:2jr0.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2jr0", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2jr0\| PDB=2jr0 \| SCENE= }}		{{STRUCTURE_2jr0\| PDB=2jr0 \| SCENE= }}

	===Solution structure of NusB from Aquifex Aeolicus===		===Solution structure of NusB from Aquifex Aeolicus===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_18177898}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 18177898 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_18177898}}		{{ABSTRACT_PUBMED_18177898}}

	==About this Structure==		==About this Structure==
-	~~2JR0~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JR0 OCA].	+	[[2jr0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JR0 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~18177898~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:018177898</ref><references group="xtra"/>
	[[Category: Aquifex aeolicus]]		[[Category: Aquifex aeolicus]]
	[[Category: Altieri, A S.]]		[[Category: Altieri, A S.]]
Line 37:		Line 25:
	[[Category: Nusb]]		[[Category: Nusb]]
	[[Category: Transcription]]		[[Category: Transcription]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 18:24:02 2009''