2jsx - Revision history

OCA at 09:42, 9 May 2024

2024-05-09T09:42:33Z

←Older revision		Revision as of 09:42, 9 May 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jsx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JSX FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jsx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JSX FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsx OCA], [https://pdbe.org/2jsx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jsx RCSB], [https://www.ebi.ac.uk/pdbsum/2jsx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jsx ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsx OCA], [https://pdbe.org/2jsx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jsx RCSB], [https://www.ebi.ac.uk/pdbsum/2jsx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jsx ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 08:36, 14 June 2023

2023-06-14T08:36:57Z

←Older revision		Revision as of 08:36, 14 June 2023
Line 1:		Line 1:

	==Solution structure of the E. coli Tat proofreading chaperone protein NapD==		==Solution structure of the E. coli Tat proofreading chaperone protein NapD==
-	<StructureSection load='2jsx' size='340' side='right'caption='[[2jsx~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='2jsx' size='340' side='right'caption='[[2jsx]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jsx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Ecoli Ecoli~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JSX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jsx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JSX FirstGlance]. <br>
-	</td></tr>~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">napD ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsx OCA], [https://pdbe.org/2jsx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jsx RCSB], [https://www.ebi.ac.uk/pdbsum/2jsx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jsx ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsx OCA], [https://pdbe.org/2jsx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jsx RCSB], [https://www.ebi.ac.uk/pdbsum/2jsx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jsx ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/NAPD_ECOLI NAPD_ECOLI]] Plays a role in the correct assembly of subunits of the periplasmic NapAB enzyme.	+	[https://www.uniprot.org/uniprot/NAPD_ECOLI NAPD_ECOLI] Plays a role in the correct assembly of subunits of the periplasmic NapAB enzyme.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 31:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Ecoli~~]]	+	[[Category: Escherichia coli K-12]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Sargent, F]]	+	[[Category: Sargent F]]
-	[[Category: Spronk~~, C A.E M~~]]	+	[[Category: Spronk CAEM]]
-	[[Category: Vuister~~, G W]]~~	+	[[Category: Vuister GW]]
-	~~[[Category: Chaperone]]~~	+
-	~~[[Category: Cytoplasm]]~~	+
-	~~[[Category: Napd]]~~	+
-	~~[[Category: Proofreading]]~~	+
-	~~[[Category: Protein]]~~	+
-	~~[[Category: Tat~~]]	+

OCA at 13:25, 24 November 2021

2021-11-24T13:25:22Z

←Older revision		Revision as of 13:25, 24 November 2021
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	<StructureSection load='2jsx' size='340' side='right'caption='[[2jsx]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2jsx' size='340' side='right'caption='[[2jsx]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jsx]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Ecoli Ecoli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2JSX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jsx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecoli Ecoli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JSX FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">napD ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">napD ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2jsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsx OCA], [~~http~~://pdbe.org/2jsx PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2jsx RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2jsx PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2jsx ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsx OCA], [https://pdbe.org/2jsx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jsx RCSB], [https://www.ebi.ac.uk/pdbsum/2jsx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jsx ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/NAPD_ECOLI NAPD_ECOLI]] Plays a role in the correct assembly of subunits of the periplasmic NapAB enzyme.	+	[[https://www.uniprot.org/uniprot/NAPD_ECOLI NAPD_ECOLI]] Plays a role in the correct assembly of subunits of the periplasmic NapAB enzyme.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 06:49, 19 February 2020

2020-02-19T06:49:50Z

←Older revision		Revision as of 06:49, 19 February 2020
Line 1:		Line 1:

	==Solution structure of the E. coli Tat proofreading chaperone protein NapD==		==Solution structure of the E. coli Tat proofreading chaperone protein NapD==
-	<StructureSection load='2jsx' size='340' side='right' caption='[[2jsx]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='2jsx' size='340' side='right'caption='[[2jsx]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jsx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JSX FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jsx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JSX FirstGlance]. <br>
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Ecoli]]		[[Category: Ecoli]]
		+	[[Category: Large Structures]]
	[[Category: Sargent, F]]		[[Category: Sargent, F]]
	[[Category: Spronk, C A.E M]]		[[Category: Spronk, C A.E M]]

OCA at 10:18, 18 July 2018

2018-07-18T10:18:22Z

←Older revision		Revision as of 10:18, 18 July 2018
Line 1:		Line 1:
		+
	==Solution structure of the E. coli Tat proofreading chaperone protein NapD==		==Solution structure of the E. coli Tat proofreading chaperone protein NapD==
	<StructureSection load='2jsx' size='340' side='right' caption='[[2jsx]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2jsx' size='340' side='right' caption='[[2jsx]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2jsx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JSX FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jsx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JSX FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">napD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">napD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsx OCA], [http://pdbe.org/2jsx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jsx RCSB], [http://www.ebi.ac.uk/pdbsum/2jsx PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsx OCA], [http://pdbe.org/2jsx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jsx RCSB], [http://www.ebi.ac.uk/pdbsum/2jsx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jsx ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/js/2jsx_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/js/2jsx_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jsx ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	[[Category: Vuister, G W]]		[[Category: Vuister, G W]]
	[[Category: Chaperone]]		[[Category: Chaperone]]
		+	[[Category: Cytoplasm]]
	[[Category: Napd]]		[[Category: Napd]]
	[[Category: Proofreading]]		[[Category: Proofreading]]
	[[Category: Protein]]		[[Category: Protein]]
	[[Category: Tat]]		[[Category: Tat]]

OCA at 13:34, 11 September 2015

2015-09-11T13:34:58Z

←Older revision		Revision as of 13:34, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2jsx' size='340' side='right' caption='[[2jsx]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2jsx' size='340' side='right' caption='[[2jsx]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jsx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli_k-12 Escherichia coli k-12~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JSX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jsx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JSX FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">napD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ~~Escherichia coli K-12~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">napD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jsx RCSB], [http://www.ebi.ac.uk/pdbsum/2jsx PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsx OCA], [http://pdbe.org/2jsx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jsx RCSB], [http://www.ebi.ac.uk/pdbsum/2jsx PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2jsx" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia coli k-12~~]]	+	[[Category: Ecoli]]
	[[Category: Sargent, F]]		[[Category: Sargent, F]]
	[[Category: Spronk, C A.E M]]		[[Category: Spronk, C A.E M]]

OCA at 17:09, 25 December 2014

2014-12-25T17:09:04Z

←Older revision		Revision as of 17:09, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jsx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JSX FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jsx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JSX FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">napD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 Escherichia coli K-12])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">napD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 Escherichia coli K-12])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jsx RCSB], [http://www.ebi.ac.uk/pdbsum/2jsx PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jsx RCSB], [http://www.ebi.ac.uk/pdbsum/2jsx PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NAPD_ECOLI NAPD_ECOLI]] Plays a role in the correct assembly of subunits of the periplasmic NapAB enzyme.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli k-12]]		[[Category: Escherichia coli k-12]]
-	[[Category: Sargent, F.]]	+	[[Category: Sargent, F]]
-	[[Category: Spronk, C A.E M.]]	+	[[Category: Spronk, C A.E M]]
-	[[Category: Vuister, G W.]]	+	[[Category: Vuister, G W]]
	[[Category: Chaperone]]		[[Category: Chaperone]]
	[[Category: Napd]]		[[Category: Napd]]

OCA at 07:45, 30 September 2014

2014-09-30T07:45:48Z

←Older revision		Revision as of 07:45, 30 September 2014
Line 1:		Line 1:
-	[[~~Image~~:2jsx.~~png\|left~~\|200px]]	+	==Solution structure of the E. coli Tat proofreading chaperone protein NapD==
		+	<StructureSection load='2jsx' size='340' side='right' caption='[[2jsx]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2jsx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JSX FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">napD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 Escherichia coli K-12])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jsx RCSB], [http://www.ebi.ac.uk/pdbsum/2jsx PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/js/2jsx_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The twin-arginine transport (Tat) system is dedicated to the translocation of folded proteins across the bacterial cytoplasmic membrane. Proteins are targeted to the Tat system by signal peptides containing a twin-arginine motif. In Escherichia coli, many Tat substrates bind redox-active cofactors in the cytoplasm before transport. Coordination of cofactor insertion with protein export involves a "Tat proofreading" process in which chaperones bind twin-arginine signal peptides, thus preventing premature export. The initial Tat signal-binding proteins described belonged to the TorD family, which are required for assembly of N- and S-oxide reductases. Here, we report that E. coli NapD is a Tat signal peptide-binding chaperone involved in biosynthesis of the Tat-dependent nitrate reductase NapA. NapD binds tightly and specifically to the NapA twin-arginine signal peptide and suppresses signal peptide translocation activity such that transport via the Tat pathway is retarded. High-resolution, heteronuclear, multidimensional NMR spectroscopy reveals the 3D solution structure of NapD. The chaperone adopts a ferredoxin-type fold, which is completely distinct from the TorD family. Thus, NapD represents a new family of twin-arginine signal-peptide-binding proteins.

-	~~{{STRUCTURE_2jsx\| PDB=2jsx \| SCENE= }}~~	+	Structural diversity in twin-arginine signal peptide-binding proteins.,Maillard J, Spronk CA, Buchanan G, Lyall V, Richardson DJ, Palmer T, Vuister GW, Sargent F Proc Natl Acad Sci U S A. 2007 Oct 2;104(40):15641-6. Epub 2007 Sep 27. PMID:17901208<ref>PMID:17901208</ref>

-	~~===Solution structure~~ of the E. ~~coli Tat proofreading chaperone protein NapD===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17901208}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2jsx]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org~~/~~wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:017901208<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Escherichia coli k-12]]		[[Category: Escherichia coli k-12]]
	[[Category: Sargent, F.]]		[[Category: Sargent, F.]]

OCA: Protected "2jsx" [edit=sysop:move=sysop]

2013-01-07T12:53:58Z

Protected "2jsx" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:53, 7 January 2013

OCA at 12:53, 7 January 2013

2013-01-07T12:53:56Z

←Older revision		Revision as of 12:53, 7 January 2013
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-	{{Seed}}
	[[Image:2jsx.png\|left\|200px]]		[[Image:2jsx.png\|left\|200px]]

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	{{STRUCTURE_2jsx\| PDB=2jsx \| SCENE= }}		{{STRUCTURE_2jsx\| PDB=2jsx \| SCENE= }}

	===Solution structure of the E. coli Tat proofreading chaperone protein NapD===		===Solution structure of the E. coli Tat proofreading chaperone protein NapD===

-
-	<!--
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	{{ABSTRACT_PUBMED_17901208}}		{{ABSTRACT_PUBMED_17901208}}

	==About this Structure==		==About this Structure==
-	~~2JSX~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli~~ Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA].	+	[[2jsx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17901208~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017901208</ref><references group="xtra"/>
-	[[Category: Escherichia coli]]	+	[[Category: Escherichia coli k-12]]
	[[Category: Sargent, F.]]		[[Category: Sargent, F.]]
	[[Category: Spronk, C A.E M.]]		[[Category: Spronk, C A.E M.]]
	[[Category: Vuister, G W.]]		[[Category: Vuister, G W.]]
	[[Category: Chaperone]]		[[Category: Chaperone]]
-	[[Category: Cytoplasm]]
	[[Category: Napd]]		[[Category: Napd]]
-	[[Category: Nmr]]
	[[Category: Proofreading]]		[[Category: Proofreading]]
	[[Category: Protein]]		[[Category: Protein]]
	[[Category: Tat]]		[[Category: Tat]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 23:30:32 2009''