2k5p - Revision history

OCA at 09:45, 9 May 2024

2024-05-09T09:45:09Z

←Older revision		Revision as of 09:45, 9 May 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2k5p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacter_metallireducens_GS-15 Geobacter metallireducens GS-15]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K5P FirstGlance]. <br>		<table><tr><td colspan='2'>[[2k5p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacter_metallireducens_GS-15 Geobacter metallireducens GS-15]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K5P FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k5p OCA], [https://pdbe.org/2k5p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k5p RCSB], [https://www.ebi.ac.uk/pdbsum/2k5p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k5p ProSAT], [https://www.topsan.org/Proteins/NESGC/2k5p TOPSAN]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k5p OCA], [https://pdbe.org/2k5p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k5p RCSB], [https://www.ebi.ac.uk/pdbsum/2k5p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k5p ProSAT], [https://www.topsan.org/Proteins/NESGC/2k5p TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 08:41, 14 June 2023

2023-06-14T08:41:55Z

←Older revision		Revision as of 08:41, 14 June 2023
Line 1:		Line 1:

	==NMR Solution Structure of a Thiamine Biosynthesis Protein from Geobacter Metallireducens: Northeast Structural Genomics Consortium Target GmR137==		==NMR Solution Structure of a Thiamine Biosynthesis Protein from Geobacter Metallireducens: Northeast Structural Genomics Consortium Target GmR137==
-	<StructureSection load='2k5p' size='340' side='right'caption='[[2k5p~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='2k5p' size='340' side='right'caption='[[2k5p]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2k5p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Geomg Geomg~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K5P FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2k5p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacter_metallireducens_GS-15 Geobacter metallireducens GS-15]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K5P FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Gmet_1567 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269799 GEOMG])</td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k5p OCA], [https://pdbe.org/2k5p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k5p RCSB], [https://www.ebi.ac.uk/pdbsum/2k5p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k5p ProSAT], [https://www.topsan.org/Proteins/NESGC/2k5p TOPSAN]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k5p OCA], [https://pdbe.org/2k5p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k5p RCSB], [https://www.ebi.ac.uk/pdbsum/2k5p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k5p ProSAT], [https://www.topsan.org/Proteins/NESGC/2k5p TOPSAN]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q39VC5_GEOMG Q39VC5_GEOMG]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 19:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Geomg~~]]	+	[[Category: Geobacter metallireducens GS-15]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Acton~~, T B~~]]	+	[[Category: Acton TB]]
-	[[Category: Baran~~, M C~~]]	+	[[Category: Baran MC]]
-	[[Category: Gurla~~, S V.T~~]]	+	[[Category: Gurla SVT]]
-	[[Category: Jiang, M]]	+	[[Category: Jiang M]]
-	[[Category: Magliaqui, M]]	+	[[Category: Magliaqui M]]
-	[[Category: Mani, R]]	+	[[Category: Mani R]]
-	[[Category: Montelione~~, G T]]~~	+	[[Category: Montelione GT]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Nair R]]
-	[[Category: Nair, R]]	+	[[Category: Rost B]]
-	[[Category: Rost, B]]	+	[[Category: Wang H]]
-	[[Category: Wang, H]]	+	[[Category: Xiao R]]
-	[[Category: Xiao, R]]	+
-	~~[[Category: Biosynthetic protein]]~~	+
-	~~[[Category: Geobacter metallireducen]]~~	+
-	~~[[Category: Gmr137]]~~	+
-	~~[[Category: Nesg]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Thiamine biosynthesis~~]]	+

OCA at 13:29, 24 November 2021

2021-11-24T13:29:16Z

←Older revision		Revision as of 13:29, 24 November 2021
Line 3:		Line 3:
	<StructureSection load='2k5p' size='340' side='right'caption='[[2k5p]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2k5p' size='340' side='right'caption='[[2k5p]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2k5p]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Geomg Geomg]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2K5P FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2k5p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geomg Geomg]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K5P FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Gmet_1567 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269799 GEOMG])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Gmet_1567 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269799 GEOMG])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2k5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k5p OCA], [~~http~~://pdbe.org/2k5p PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2k5p RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2k5p PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2k5p ProSAT], [~~http~~://www.topsan.org/Proteins/NESGC/2k5p TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k5p OCA], [https://pdbe.org/2k5p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k5p RCSB], [https://www.ebi.ac.uk/pdbsum/2k5p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k5p ProSAT], [https://www.topsan.org/Proteins/NESGC/2k5p TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 06:55, 19 February 2020

2020-02-19T06:55:57Z

←Older revision		Revision as of 06:55, 19 February 2020
Line 1:		Line 1:

	==NMR Solution Structure of a Thiamine Biosynthesis Protein from Geobacter Metallireducens: Northeast Structural Genomics Consortium Target GmR137==		==NMR Solution Structure of a Thiamine Biosynthesis Protein from Geobacter Metallireducens: Northeast Structural Genomics Consortium Target GmR137==
-	<StructureSection load='2k5p' size='340' side='right' caption='[[2k5p]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='2k5p' size='340' side='right'caption='[[2k5p]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2k5p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geomg Geomg]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K5P FirstGlance]. <br>		<table><tr><td colspan='2'>[[2k5p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geomg Geomg]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K5P FirstGlance]. <br>
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Geomg]]		[[Category: Geomg]]
		+	[[Category: Large Structures]]
	[[Category: Acton, T B]]		[[Category: Acton, T B]]
	[[Category: Baran, M C]]		[[Category: Baran, M C]]

OCA at 11:08, 18 July 2018

2018-07-18T11:08:09Z

←Older revision		Revision as of 11:08, 18 July 2018
Line 1:		Line 1:
		+
	==NMR Solution Structure of a Thiamine Biosynthesis Protein from Geobacter Metallireducens: Northeast Structural Genomics Consortium Target GmR137==		==NMR Solution Structure of a Thiamine Biosynthesis Protein from Geobacter Metallireducens: Northeast Structural Genomics Consortium Target GmR137==
	<StructureSection load='2k5p' size='340' side='right' caption='[[2k5p]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2k5p' size='340' side='right' caption='[[2k5p]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2k5p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geomg Geomg]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K5P FirstGlance]. <br>		<table><tr><td colspan='2'>[[2k5p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geomg Geomg]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K5P FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Gmet_1567 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269799 GEOMG])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Gmet_1567 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269799 GEOMG])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k5p OCA], [http://pdbe.org/2k5p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2k5p RCSB], [http://www.ebi.ac.uk/pdbsum/2k5p PDBsum], [http://www.topsan.org/Proteins/NESGC/2k5p TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k5p OCA], [http://pdbe.org/2k5p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2k5p RCSB], [http://www.ebi.ac.uk/pdbsum/2k5p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2k5p ProSAT], [http://www.topsan.org/Proteins/NESGC/2k5p TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k5/2k5p_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k5/2k5p_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2k5p ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 10:58, 11 September 2015

2015-09-11T10:58:09Z

←Older revision		Revision as of 10:58, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2k5p' size='340' side='right' caption='[[2k5p]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2k5p' size='340' side='right' caption='[[2k5p]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2k5p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Geobacter_metallireducens_gs-15 Geobacter metallireducens gs-15~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K5P FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2k5p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geomg Geomg]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K5P FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Gmet_1567 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269799 ~~Geobacter metallireducens GS-15~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Gmet_1567 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269799 GEOMG])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k5p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2k5p RCSB], [http://www.ebi.ac.uk/pdbsum/2k5p PDBsum], [http://www.topsan.org/Proteins/NESGC/2k5p TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k5p OCA], [http://pdbe.org/2k5p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2k5p RCSB], [http://www.ebi.ac.uk/pdbsum/2k5p PDBsum], [http://www.topsan.org/Proteins/NESGC/2k5p TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 18:		Line 18:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Geobacter metallireducens gs-15~~]]	+	[[Category: Geomg]]
	[[Category: Acton, T B]]		[[Category: Acton, T B]]
	[[Category: Baran, M C]]		[[Category: Baran, M C]]

OCA at 14:16, 19 January 2015

2015-01-19T14:16:06Z

←Older revision		Revision as of 14:16, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2k5p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacter_metallireducens_gs-15 Geobacter metallireducens gs-15]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K5P FirstGlance]. <br>		<table><tr><td colspan='2'>[[2k5p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacter_metallireducens_gs-15 Geobacter metallireducens gs-15]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K5P FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Gmet_1567 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269799 Geobacter metallireducens GS-15])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Gmet_1567 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269799 Geobacter metallireducens GS-15])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k5p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2k5p RCSB], [http://www.ebi.ac.uk/pdbsum/2k5p PDBsum], [http://www.topsan.org/Proteins/NESGC/2k5p TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k5p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2k5p RCSB], [http://www.ebi.ac.uk/pdbsum/2k5p PDBsum], [http://www.topsan.org/Proteins/NESGC/2k5p TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 19:		Line 19:
	</StructureSection>		</StructureSection>
	[[Category: Geobacter metallireducens gs-15]]		[[Category: Geobacter metallireducens gs-15]]
-	[[Category: Acton, T B.]]	+	[[Category: Acton, T B]]
-	[[Category: Baran, M C.]]	+	[[Category: Baran, M C]]
-	[[Category: Gurla, S V.T.]]	+	[[Category: Gurla, S V.T]]
-	[[Category: Jiang, M.]]	+	[[Category: Jiang, M]]
-	[[Category: Magliaqui, M.]]	+	[[Category: Magliaqui, M]]
-	[[Category: Mani, R.]]	+	[[Category: Mani, R]]
-	[[Category: Montelione, G T.]]	+	[[Category: Montelione, G T]]
-	[[Category: ~~NESG, Northeast~~ Structural ~~Genomics Consortium.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Nair, R.]]	+	[[Category: Nair, R]]
-	[[Category: Rost, B.]]	+	[[Category: Rost, B]]
-	[[Category: Wang, H.]]	+	[[Category: Wang, H]]
-	[[Category: Xiao, R.]]	+	[[Category: Xiao, R]]
	[[Category: Biosynthetic protein]]		[[Category: Biosynthetic protein]]
	[[Category: Geobacter metallireducen]]		[[Category: Geobacter metallireducen]]
	[[Category: Gmr137]]		[[Category: Gmr137]]
	[[Category: Nesg]]		[[Category: Nesg]]
-	[[Category: ~~Northeast structural genomics consortium]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi-2]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Thiamine biosynthesis]]		[[Category: Thiamine biosynthesis]]

OCA at 08:14, 30 September 2014

2014-09-30T08:14:34Z

←Older revision		Revision as of 08:14, 30 September 2014
Line 1:		Line 1:
-	~~[[Image:2k5p.png\|left\|200px]]~~	+	==NMR Solution Structure of a Thiamine Biosynthesis Protein from Geobacter Metallireducens: Northeast Structural Genomics Consortium Target GmR137==
-		+	<StructureSection load='2k5p' size='340' side='right' caption='[[2k5p]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
-	~~{{STRUCTURE_2k5p\| PDB=2k5p \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2k5p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacter_metallireducens_gs-15 Geobacter metallireducens gs-15]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K5P FirstGlance]. <br>
-	===NMR Solution Structure of a Thiamine Biosynthesis Protein from Geobacter Metallireducens: Northeast Structural Genomics Consortium Target GmR137===	+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Gmet_1567 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269799 Geobacter metallireducens GS-15])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k5p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2k5p RCSB], [http://www.ebi.ac.uk/pdbsum/2k5p PDBsum], [http://www.topsan.org/Proteins/NESGC/2k5p TOPSAN]</span></td></tr>
-		+	<table>
-	==~~About this Structure~~==	+	== Evolutionary Conservation ==
-	[[2k5p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacter_metallireducens_gs-15 Geobacter metallireducens gs-15]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA].	+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k5/2k5p_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Geobacter metallireducens gs-15]]		[[Category: Geobacter metallireducens gs-15]]
	[[Category: Acton, T B.]]		[[Category: Acton, T B.]]

OCA: Protected "2k5p" [edit=sysop:move=sysop]

2013-01-07T10:41:14Z

Protected "2k5p" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:41, 7 January 2013

OCA at 10:41, 7 January 2013

2013-01-07T10:41:10Z

←Older revision		Revision as of 10:41, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2k5p.png\|left\|200px]]		[[Image:2k5p.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2k5p", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2k5p\| PDB=2k5p \| SCENE= }}		{{STRUCTURE_2k5p\| PDB=2k5p \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~2K5P~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Bacteria Bacteria~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA].	+	[[2k5p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacter_metallireducens_gs-15 Geobacter metallireducens gs-15]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA].
-	[[Category: ~~Bacteria~~]]	+	[[Category: Geobacter metallireducens gs-15]]
	[[Category: Acton, T B.]]		[[Category: Acton, T B.]]
	[[Category: Baran, M C.]]		[[Category: Baran, M C.]]
Line 32:		Line 25:
	[[Category: Gmr137]]		[[Category: Gmr137]]
	[[Category: Nesg]]		[[Category: Nesg]]
-	[[Category: Nmr]]
	[[Category: Northeast structural genomics consortium]]		[[Category: Northeast structural genomics consortium]]
	[[Category: Protein structure initiative]]		[[Category: Protein structure initiative]]
Line 38:		Line 30:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Thiamine biosynthesis]]		[[Category: Thiamine biosynthesis]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 10:33:49 2008''