2keg - Revision history

OCA at 12:50, 20 December 2023

2023-12-20T12:50:41Z

←Older revision		Revision as of 12:50, 20 December 2023
Line 1:		Line 1:

	==NMR structure of Plantaricin K in DPC-micelles==		==NMR structure of Plantaricin K in DPC-micelles==
-	<StructureSection load='2keg' size='340' side='right'caption='[[2keg~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='2keg' size='340' side='right'caption='[[2keg]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2keg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KEG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KEG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2keg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactiplantibacillus_plantarum Lactiplantibacillus plantarum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KEG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KEG FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2keg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2keg OCA], [https://pdbe.org/2keg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2keg RCSB], [https://www.ebi.ac.uk/pdbsum/2keg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2keg ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2keg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2keg OCA], [https://pdbe.org/2keg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2keg RCSB], [https://www.ebi.ac.uk/pdbsum/2keg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2keg ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/P71460_LACPN P71460_LACPN]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Lactiplantibacillus plantarum]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Fimland, G]]	+	[[Category: Fimland G]]
-	[[Category: Haugen, M]]	+	[[Category: Haugen M]]
-	[[Category: Kristiansen, P]]	+	[[Category: Kristiansen P]]
-	[[Category: Nissen-Meyer, J]]	+	[[Category: Nissen-Meyer J]]
-	[[Category: Rogne, P]]	+	[[Category: Rogne P]]
-	~~[[Category: Antimicrobial protein]]~~	+
-	~~[[Category: Protein~~]]	+

OCA at 07:34, 27 January 2022

2022-01-27T07:34:03Z

←Older revision		Revision as of 07:34, 27 January 2022
Line 3:		Line 3:
	<StructureSection load='2keg' size='340' side='right'caption='[[2keg]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2keg' size='340' side='right'caption='[[2keg]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2keg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KEG OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2KEG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2keg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KEG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KEG FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2keg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2keg OCA], [~~http~~://pdbe.org/2keg PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2keg RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2keg PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2keg ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2keg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2keg OCA], [https://pdbe.org/2keg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2keg RCSB], [https://www.ebi.ac.uk/pdbsum/2keg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2keg ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 06:34, 22 April 2020

2020-04-22T06:34:01Z

←Older revision		Revision as of 06:34, 22 April 2020
Line 1:		Line 1:

	==NMR structure of Plantaricin K in DPC-micelles==		==NMR structure of Plantaricin K in DPC-micelles==
-	<StructureSection load='2keg' size='340' side='right' caption='[[2keg]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='2keg' size='340' side='right'caption='[[2keg]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2keg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KEG OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2KEG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2keg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KEG OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2KEG FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2keg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2keg OCA], [http://pdbe.org/2keg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2keg RCSB], [http://www.ebi.ac.uk/pdbsum/2keg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2keg ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2keg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2keg OCA], [http://pdbe.org/2keg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2keg RCSB], [http://www.ebi.ac.uk/pdbsum/2keg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2keg ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Fimland, G]]		[[Category: Fimland, G]]
	[[Category: Haugen, M]]		[[Category: Haugen, M]]

OCA at 10:08, 18 July 2018

2018-07-18T10:08:53Z

←Older revision		Revision as of 10:08, 18 July 2018
Line 1:		Line 1:
		+
	==NMR structure of Plantaricin K in DPC-micelles==		==NMR structure of Plantaricin K in DPC-micelles==
	<StructureSection load='2keg' size='340' side='right' caption='[[2keg]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2keg' size='340' side='right' caption='[[2keg]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2keg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KEG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KEG FirstGlance]. <br>		<table><tr><td colspan='2'>[[2keg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KEG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KEG FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2keg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2keg OCA], [http://pdbe.org/2keg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2keg RCSB], [http://www.ebi.ac.uk/pdbsum/2keg PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2keg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2keg OCA], [http://pdbe.org/2keg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2keg RCSB], [http://www.ebi.ac.uk/pdbsum/2keg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2keg ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 11:09, 11 September 2015

2015-09-11T11:09:22Z

←Older revision		Revision as of 11:09, 11 September 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2keg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KEG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KEG FirstGlance]. <br>		<table><tr><td colspan='2'>[[2keg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KEG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KEG FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2keg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2keg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2keg RCSB], [http://www.ebi.ac.uk/pdbsum/2keg PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2keg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2keg OCA], [http://pdbe.org/2keg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2keg RCSB], [http://www.ebi.ac.uk/pdbsum/2keg PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 13:		Line 13:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2keg" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 14:45, 19 January 2015

2015-01-19T14:45:33Z

←Older revision		Revision as of 14:45, 19 January 2015
Line 17:		Line 17:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Fimland, G.]]	+	[[Category: Fimland, G]]
-	[[Category: Haugen, M.]]	+	[[Category: Haugen, M]]
-	[[Category: Kristiansen, P.]]	+	[[Category: Kristiansen, P]]
-	[[Category: Nissen-Meyer, J.]]	+	[[Category: Nissen-Meyer, J]]
-	[[Category: Rogne, P.]]	+	[[Category: Rogne, P]]
	[[Category: Antimicrobial protein]]		[[Category: Antimicrobial protein]]
	[[Category: Protein]]		[[Category: Protein]]

OCA at 15:27, 12 October 2014

2014-10-12T15:27:19Z

←Older revision		Revision as of 15:27, 12 October 2014
Line 1:		Line 1:
-	[[~~Image~~:2keg.~~png\|left\|200px~~]]	+	==NMR structure of Plantaricin K in DPC-micelles==
		+	<StructureSection load='2keg' size='340' side='right' caption='[[2keg]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2keg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KEG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KEG FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2keg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2keg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2keg RCSB], [http://www.ebi.ac.uk/pdbsum/2keg PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The three-dimensional structures of the two peptides, PlnJ and PlnK, that constitutes the two-peptide bacteriocin plantaricin JK have been solved in water/TFE and water/DPC-micellar solutions using nuclear magnetic resonance (NMR) spectroscopy. PlnJ, a 25 residue peptide, has an N-terminal amphiphilic alpha-helix between Trp-3 and Tyr-15. The 32 residues long PlnK forms a central amphiphilic alpha-helix between Gly-9 and Leu-24. Measurements of the effect on anti-microbial activity of single glycine replacements in PlnJ and PlnK show that Gly-13 and Gly-17 in both peptides are very sensitive, giving more than a 100-fold reduction in activity when large residues replace glycine. In variants where other glycine residues, Gly-20 in PlnJ and Gly-7, Gly-9, Gly-24 and Gly-25 in PlnK, were replaced, the activity was reduced less than 10-fold. It is proposed that the detrimental effect on activity when exchanging Gly-13 and Gly-17 in PlnJ and PlnK is a result of reduced ability of the two peptides to interact through the GxxxG-motifs constituting Gly-13 and Gly-17.

-	~~{{STRUCTURE_2keg\| PDB=2keg \| SCENE= }}~~	+	Three-dimensional structure of the two-peptide bacteriocin plantaricin JK.,Rogne P, Haugen C, Fimland G, Nissen-Meyer J, Kristiansen PE Peptides. 2009 Sep;30(9):1613-21. Epub 2009 Jun 16. PMID:19538999<ref>PMID:19538999</ref>

-	~~===NMR structure~~ of ~~Plantaricin K in DPC-micelles===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19538999}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2keg]] is a 1 chain structure~~. ~~Full experimental information is available from [http://oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=2KEG OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:019538999<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Fimland, G.]]		[[Category: Fimland, G.]]
	[[Category: Haugen, M.]]		[[Category: Haugen, M.]]

OCA: Protected "2keg" [edit=sysop:move=sysop]

2013-01-07T10:50:12Z

Protected "2keg" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:50, 7 January 2013

OCA at 10:50, 7 January 2013

2013-01-07T10:50:07Z

←Older revision		Revision as of 10:50, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2keg.png\|left\|200px]]		[[Image:2keg.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2keg", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2keg\| PDB=2keg \| SCENE= }}		{{STRUCTURE_2keg\| PDB=2keg \| SCENE= }}

	===NMR structure of Plantaricin K in DPC-micelles===		===NMR structure of Plantaricin K in DPC-micelles===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19538999}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19538999 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_19538999}}		{{ABSTRACT_PUBMED_19538999}}

	==About this Structure==		==About this Structure==
-	~~2KEG~~ is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KEG OCA].	+	[[2keg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KEG OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19538999~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019538999</ref><references group="xtra"/>
	[[Category: Fimland, G.]]		[[Category: Fimland, G.]]
	[[Category: Haugen, M.]]		[[Category: Haugen, M.]]
Line 30:		Line 18:
	[[Category: Rogne, P.]]		[[Category: Rogne, P.]]
	[[Category: Antimicrobial protein]]		[[Category: Antimicrobial protein]]
-	[[Category: Peptide]]
	[[Category: Protein]]		[[Category: Protein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 9 08:28:56 2009''

OCA at 05:28, 9 September 2009

2009-09-09T05:28:56Z

←Older revision		Revision as of 05:28, 9 September 2009
Line 1:		Line 1:
	{{Seed}}		{{Seed}}
-	[[Image:2keg.~~jpg~~\|left\|200px]]	+	[[Image:2keg.png\|left\|200px]]

	<!--		<!--
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	[[Category: Protein]]		[[Category: Protein]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jul~~ ~~8 09~~:25:57 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 9 08:28:56 2009''