2khg - Revision history

OCA at 05:36, 15 May 2024

2024-05-15T05:36:21Z

←Older revision		Revision as of 05:36, 15 May 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2khg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactiplantibacillus_plantarum Lactiplantibacillus plantarum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KHG FirstGlance]. <br>		<table><tr><td colspan='2'>[[2khg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactiplantibacillus_plantarum Lactiplantibacillus plantarum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KHG FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2khg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2khg OCA], [https://pdbe.org/2khg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2khg RCSB], [https://www.ebi.ac.uk/pdbsum/2khg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2khg ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2khg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2khg OCA], [https://pdbe.org/2khg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2khg RCSB], [https://www.ebi.ac.uk/pdbsum/2khg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2khg ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 08:44, 14 June 2023

2023-06-14T08:44:32Z

←Older revision		Revision as of 08:44, 14 June 2023
Line 1:		Line 1:

	==Plantaricin J in TFE==		==Plantaricin J in TFE==
-	<StructureSection load='2khg' size='340' side='right'caption='[[2khg~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='2khg' size='340' side='right'caption='[[2khg]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2khg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KHG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2khg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactiplantibacillus_plantarum Lactiplantibacillus plantarum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KHG FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2khg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2khg OCA], [https://pdbe.org/2khg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2khg RCSB], [https://www.ebi.ac.uk/pdbsum/2khg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2khg ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2khg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2khg OCA], [https://pdbe.org/2khg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2khg RCSB], [https://www.ebi.ac.uk/pdbsum/2khg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2khg ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/P71461_LACPN P71461_LACPN]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 19:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Lactiplantibacillus plantarum]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Haugen, C]]	+	[[Category: Haugen C]]
-	[[Category: Kristiansen, P]]	+	[[Category: Kristiansen P]]
-	[[Category: Nissen-Meyer, J]]	+	[[Category: Nissen-Meyer J]]
-	[[Category: Rogne, P]]	+	[[Category: Rogne P]]
-	~~[[Category: Anti-microbial]]~~	+
-	~~[[Category: Antimicrobial protein]]~~	+
-	~~[[Category: Bacteriocin]]~~	+
-	~~[[Category: Two-peptide~~]]	+

OCA at 07:05, 1 December 2021

2021-12-01T07:05:24Z

←Older revision		Revision as of 07:05, 1 December 2021
Line 3:		Line 3:
	<StructureSection load='2khg' size='340' side='right'caption='[[2khg]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2khg' size='340' side='right'caption='[[2khg]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2khg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHG OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2KHG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2khg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KHG FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2khg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2khg OCA], [~~http~~://pdbe.org/2khg PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2khg RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2khg PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2khg ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2khg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2khg OCA], [https://pdbe.org/2khg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2khg RCSB], [https://www.ebi.ac.uk/pdbsum/2khg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2khg ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:35, 26 February 2020

2020-02-26T09:35:56Z

←Older revision		Revision as of 09:35, 26 February 2020
Line 1:		Line 1:

	==Plantaricin J in TFE==		==Plantaricin J in TFE==
-	<StructureSection load='2khg' size='340' side='right' caption='[[2khg]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='2khg' size='340' side='right'caption='[[2khg]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2khg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KHG FirstGlance]. <br>		<table><tr><td colspan='2'>[[2khg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KHG FirstGlance]. <br>
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Haugen, C]]		[[Category: Haugen, C]]
	[[Category: Kristiansen, P]]		[[Category: Kristiansen, P]]

OCA at 11:06, 18 July 2018

2018-07-18T11:06:27Z

←Older revision		Revision as of 11:06, 18 July 2018
Line 1:		Line 1:
		+
	==Plantaricin J in TFE==		==Plantaricin J in TFE==
	<StructureSection load='2khg' size='340' side='right' caption='[[2khg]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2khg' size='340' side='right' caption='[[2khg]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2khg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KHG FirstGlance]. <br>		<table><tr><td colspan='2'>[[2khg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KHG FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2khg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2khg OCA], [http://pdbe.org/2khg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2khg RCSB], [http://www.ebi.ac.uk/pdbsum/2khg PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2khg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2khg OCA], [http://pdbe.org/2khg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2khg RCSB], [http://www.ebi.ac.uk/pdbsum/2khg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2khg ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 00:32, 11 September 2015

2015-09-11T00:32:37Z

←Older revision		Revision as of 00:32, 11 September 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2khg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KHG FirstGlance]. <br>		<table><tr><td colspan='2'>[[2khg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KHG FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2khg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2khg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2khg RCSB], [http://www.ebi.ac.uk/pdbsum/2khg PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2khg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2khg OCA], [http://pdbe.org/2khg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2khg RCSB], [http://www.ebi.ac.uk/pdbsum/2khg PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 13:		Line 13:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2khg" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 17:00, 19 January 2015

2015-01-19T17:00:18Z

←Older revision		Revision as of 17:00, 19 January 2015
Line 17:		Line 17:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Haugen, C.]]	+	[[Category: Haugen, C]]
-	[[Category: Kristiansen, P.]]	+	[[Category: Kristiansen, P]]
-	[[Category: Nissen-Meyer, J.]]	+	[[Category: Nissen-Meyer, J]]
-	[[Category: Rogne, P.]]	+	[[Category: Rogne, P]]
	[[Category: Anti-microbial]]		[[Category: Anti-microbial]]
	[[Category: Antimicrobial protein]]		[[Category: Antimicrobial protein]]
	[[Category: Bacteriocin]]		[[Category: Bacteriocin]]
	[[Category: Two-peptide]]		[[Category: Two-peptide]]

OCA at 15:33, 12 October 2014

2014-10-12T15:33:42Z

←Older revision		Revision as of 15:33, 12 October 2014
Line 1:		Line 1:
-	[[~~Image~~:2khg.~~png\|left\|200px~~]]	+	==Plantaricin J in TFE==
		+	<StructureSection load='2khg' size='340' side='right' caption='[[2khg]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2khg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KHG FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2khg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2khg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2khg RCSB], [http://www.ebi.ac.uk/pdbsum/2khg PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The three-dimensional structures of the two peptides, PlnJ and PlnK, that constitutes the two-peptide bacteriocin plantaricin JK have been solved in water/TFE and water/DPC-micellar solutions using nuclear magnetic resonance (NMR) spectroscopy. PlnJ, a 25 residue peptide, has an N-terminal amphiphilic alpha-helix between Trp-3 and Tyr-15. The 32 residues long PlnK forms a central amphiphilic alpha-helix between Gly-9 and Leu-24. Measurements of the effect on anti-microbial activity of single glycine replacements in PlnJ and PlnK show that Gly-13 and Gly-17 in both peptides are very sensitive, giving more than a 100-fold reduction in activity when large residues replace glycine. In variants where other glycine residues, Gly-20 in PlnJ and Gly-7, Gly-9, Gly-24 and Gly-25 in PlnK, were replaced, the activity was reduced less than 10-fold. It is proposed that the detrimental effect on activity when exchanging Gly-13 and Gly-17 in PlnJ and PlnK is a result of reduced ability of the two peptides to interact through the GxxxG-motifs constituting Gly-13 and Gly-17.

-	~~{{STRUCTURE_2khg\| PDB=2khg \| SCENE= }}~~	+	Three-dimensional structure of the two-peptide bacteriocin plantaricin JK.,Rogne P, Haugen C, Fimland G, Nissen-Meyer J, Kristiansen PE Peptides. 2009 Sep;30(9):1613-21. Epub 2009 Jun 16. PMID:19538999<ref>PMID:19538999</ref>

-	~~===Plantaricin J in TFE===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19538999}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2khg]] is~~ a ~~1 chain structure~~. ~~Full experimental information is available from [http://oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=2KHG OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:019538999<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Haugen, C.]]		[[Category: Haugen, C.]]
	[[Category: Kristiansen, P.]]		[[Category: Kristiansen, P.]]

OCA: Protected "2khg" [edit=sysop:move=sysop]

2013-01-07T11:57:34Z

Protected "2khg" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:57, 7 January 2013

OCA at 11:57, 7 January 2013

2013-01-07T11:57:31Z

←Older revision		Revision as of 11:57, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2khg.png\|left\|200px]]		[[Image:2khg.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2khg", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2khg\| PDB=2khg \| SCENE= }}		{{STRUCTURE_2khg\| PDB=2khg \| SCENE= }}

	===Plantaricin J in TFE===		===Plantaricin J in TFE===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19538999}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19538999 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19538999}}		{{ABSTRACT_PUBMED_19538999}}

	==About this Structure==		==About this Structure==
-	~~2KHG~~ is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHG OCA].	+	[[2khg]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHG OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19538999~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019538999</ref><references group="xtra"/>
	[[Category: Haugen, C.]]		[[Category: Haugen, C.]]
	[[Category: Kristiansen, P.]]		[[Category: Kristiansen, P.]]
Line 31:		Line 19:
	[[Category: Antimicrobial protein]]		[[Category: Antimicrobial protein]]
	[[Category: Bacteriocin]]		[[Category: Bacteriocin]]
-	[[Category: Peptide]]
	[[Category: Two-peptide]]		[[Category: Two-peptide]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Sep 3 16:25:15 2009''