2kmf - Revision history

OCA at 19:12, 29 May 2024

2024-05-29T19:12:45Z

←Older revision		Revision as of 19:12, 29 May 2024
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	==Solution Structure of Psb27 from cyanobacterial photosystem II==		==Solution Structure of Psb27 from cyanobacterial photosystem II==
-	<StructureSection load='2kmf' size='340' side='right'caption='[[2kmf~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='2kmf' size='340' side='right'caption='[[2kmf]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2kmf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Aphanocapsa_sp~~.~~_(strain_n-1) Aphanocapsa~~ sp. ~~(strain n-1)~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KMF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2kmf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803 Synechocystis sp. PCC 6803]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KMF FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>psb27 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~1148 Aphanocapsa sp. (strain N-1)])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kmf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kmf OCA], [https://pdbe.org/2kmf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kmf RCSB], [https://www.ebi.ac.uk/pdbsum/2kmf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kmf ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kmf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kmf OCA], [https://pdbe.org/2kmf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kmf RCSB], [https://www.ebi.ac.uk/pdbsum/2kmf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kmf ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/PSB27_SYNY3 PSB27_SYNY3]] Plays a role in the repair and/or biogenesis of the calcium-manganese-oxide cluster on the lumenal face of the thylakoid membrane. Photosystem II (PSII) complexes containing this protein are monomeric, are assembly intermediates lacking the calcium-manganese-oxide cluster and miss some of the lumenal subunits. Probably blocks binding of some of the small lumenal subunits.<ref>PMID:18089572</ref> <ref>PMID:18834146</ref> <ref>PMID:21592967</ref> <ref>PMID:22031695</ref> <ref>PMID:22086423</ref>	+	[https://www.uniprot.org/uniprot/PSB27_SYNY3 PSB27_SYNY3] Plays a role in the repair and/or biogenesis of the calcium-manganese-oxide cluster on the lumenal face of the thylakoid membrane. Photosystem II (PSII) complexes containing this protein are monomeric, are assembly intermediates lacking the calcium-manganese-oxide cluster and miss some of the lumenal subunits. Probably blocks binding of some of the small lumenal subunits.<ref>PMID:18089572</ref> <ref>PMID:18834146</ref> <ref>PMID:21592967</ref> <ref>PMID:22031695</ref> <ref>PMID:22086423</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:

	==See Also==		==See Also==
-	*[[Photosystem II\|Photosystem II]]	+	*[[Photosystem II 3D structures\|Photosystem II 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 36:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Day~~, C L~~]]	+	[[Category: Synechocystis sp. PCC 6803]]
-	[[Category: Eaton-Rye~~, J J~~]]	+	[[Category: Day CL]]
-	[[Category: Hinds~~, M G~~]]	+	[[Category: Eaton-Rye JJ]]
-	[[Category: Mabbitt~~, P D~~]]	+	[[Category: Hinds MG]]
-	[[Category: Rautureau~~, G J.P~~]]	+	[[Category: Mabbitt PD]]
-	[[Category: Wilbanks~~, S M]]~~	+	[[Category: Rautureau GJP]]
-	~~[[Category: Cyanobacteria]]~~	+	[[Category: Wilbanks SM]]
-	~~[[Category: Helical bundle]]~~	+
-	~~[[Category: Photosynthesis]]~~	+
-	~~[[Category: Photosystem ii]]~~	+
-	~~[[Category: Psb27~~]]	+

OCA at 07:28, 14 April 2021

2021-04-14T07:28:35Z

←Older revision		Revision as of 07:28, 14 April 2021
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	==Solution Structure of Psb27 from cyanobacterial photosystem II==		==Solution Structure of Psb27 from cyanobacterial photosystem II==
-	<StructureSection load='2kmf' size='340' side='right' caption='[[2kmf]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='2kmf' size='340' side='right'caption='[[2kmf]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2kmf]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Aphanocapsa_sp._(strain_n-1) Aphanocapsa sp. (strain n-1)]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2KMF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2kmf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aphanocapsa_sp._(strain_n-1) Aphanocapsa sp. (strain n-1)]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KMF FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">psb27 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1148 Aphanocapsa sp. (strain N-1)])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">psb27 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1148 Aphanocapsa sp. (strain N-1)])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2kmf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kmf OCA], [~~http~~://pdbe.org/2kmf PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2kmf RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2kmf PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2kmf ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kmf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kmf OCA], [https://pdbe.org/2kmf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kmf RCSB], [https://www.ebi.ac.uk/pdbsum/2kmf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kmf ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/PSB27_SYNY3 PSB27_SYNY3]] Plays a role in the repair and/or biogenesis of the calcium-manganese-oxide cluster on the lumenal face of the thylakoid membrane. Photosystem II (PSII) complexes containing this protein are monomeric, are assembly intermediates lacking the calcium-manganese-oxide cluster and miss some of the lumenal subunits. Probably blocks binding of some of the small lumenal subunits.<ref>PMID:18089572</ref> <ref>PMID:18834146</ref> <ref>PMID:21592967</ref> <ref>PMID:22031695</ref> <ref>PMID:22086423</ref>	+	[[https://www.uniprot.org/uniprot/PSB27_SYNY3 PSB27_SYNY3]] Plays a role in the repair and/or biogenesis of the calcium-manganese-oxide cluster on the lumenal face of the thylakoid membrane. Photosystem II (PSII) complexes containing this protein are monomeric, are assembly intermediates lacking the calcium-manganese-oxide cluster and miss some of the lumenal subunits. Probably blocks binding of some of the small lumenal subunits.<ref>PMID:18089572</ref> <ref>PMID:18834146</ref> <ref>PMID:21592967</ref> <ref>PMID:22031695</ref> <ref>PMID:22086423</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Day, C L]]		[[Category: Day, C L]]
	[[Category: Eaton-Rye, J J]]		[[Category: Eaton-Rye, J J]]

OCA at 07:58, 25 July 2018

2018-07-25T07:58:20Z

←Older revision		Revision as of 07:58, 25 July 2018
Line 1:		Line 1:
		+
	==Solution Structure of Psb27 from cyanobacterial photosystem II==		==Solution Structure of Psb27 from cyanobacterial photosystem II==
	<StructureSection load='2kmf' size='340' side='right' caption='[[2kmf]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2kmf' size='340' side='right' caption='[[2kmf]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2kmf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aphanocapsa_sp._(strain_n-1) Aphanocapsa sp. (strain n-1)]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KMF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2kmf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aphanocapsa_sp._(strain_n-1) Aphanocapsa sp. (strain n-1)]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KMF FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">psb27 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1148 Aphanocapsa sp. (strain N-1)])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">psb27 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1148 Aphanocapsa sp. (strain N-1)])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kmf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kmf OCA], [http://pdbe.org/2kmf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kmf RCSB], [http://www.ebi.ac.uk/pdbsum/2kmf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kmf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kmf OCA], [http://pdbe.org/2kmf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kmf RCSB], [http://www.ebi.ac.uk/pdbsum/2kmf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2kmf ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/km/2kmf_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/km/2kmf_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 14:33, 8 February 2016

2016-02-08T14:33:01Z

←Older revision		Revision as of 14:33, 8 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kmf ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 12:31, 10 September 2015

2015-09-10T12:31:01Z

←Older revision		Revision as of 12:31, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2kmf' size='340' side='right' caption='[[2kmf]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2kmf' size='340' side='right' caption='[[2kmf]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2kmf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Synechocystis_sp~~. ~~Synechocystis~~ sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KMF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2kmf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aphanocapsa_sp._(strain_n-1) Aphanocapsa sp. (strain n-1)]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KMF FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">psb27 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~1143 Synechocystis~~ sp.])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">psb27 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1148 Aphanocapsa sp. (strain N-1)])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kmf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kmf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2kmf RCSB], [http://www.ebi.ac.uk/pdbsum/2kmf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kmf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kmf OCA], [http://pdbe.org/2kmf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kmf RCSB], [http://www.ebi.ac.uk/pdbsum/2kmf PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~PS11_SYNY3 PS11_SYNY3~~]] Plays a role in the repair and/or biogenesis of the calcium-manganese-oxide cluster on the lumenal face of the thylakoid membrane. Photosystem II (PSII) complexes containing this protein are monomeric, are assembly intermediates lacking the calcium-manganese-oxide cluster and miss some of the lumenal subunits. Probably blocks binding of some of the small lumenal subunits.<ref>PMID:~~22031695~~</ref> <ref>PMID:~~18089572~~</ref> <ref>PMID:21592967</ref> <ref>PMID:22086423</ref>	+	[[http://www.uniprot.org/uniprot/PSB27_SYNY3 PSB27_SYNY3]] Plays a role in the repair and/or biogenesis of the calcium-manganese-oxide cluster on the lumenal face of the thylakoid membrane. Photosystem II (PSII) complexes containing this protein are monomeric, are assembly intermediates lacking the calcium-manganese-oxide cluster and miss some of the lumenal subunits. Probably blocks binding of some of the small lumenal subunits.<ref>PMID:18089572</ref> <ref>PMID:18834146</ref> <ref>PMID:21592967</ref> <ref>PMID:22031695</ref> <ref>PMID:22086423</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2kmf" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 33:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Synechocystis sp]]
	[[Category: Day, C L]]		[[Category: Day, C L]]
	[[Category: Eaton-Rye, J J]]		[[Category: Eaton-Rye, J J]]

OCA at 00:02, 25 December 2014

2014-12-25T00:02:28Z

←Older revision		Revision as of 00:02, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2kmf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KMF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2kmf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KMF FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">psb27 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1143 Synechocystis sp.])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">psb27 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1143 Synechocystis sp.])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kmf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kmf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2kmf RCSB], [http://www.ebi.ac.uk/pdbsum/2kmf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kmf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kmf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2kmf RCSB], [http://www.ebi.ac.uk/pdbsum/2kmf PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PS11_SYNY3 PS11_SYNY3]] Plays a role in the repair and/or biogenesis of the calcium-manganese-oxide cluster on the lumenal face of the thylakoid membrane. Photosystem II (PSII) complexes containing this protein are monomeric, are assembly intermediates lacking the calcium-manganese-oxide cluster and miss some of the lumenal subunits. Probably blocks binding of some of the small lumenal subunits.<ref>PMID:22031695</ref> <ref>PMID:18089572</ref> <ref>PMID:21592967</ref> <ref>PMID:22086423</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Synechocystis sp.]]	+	[[Category: Synechocystis sp]]
-	[[Category: Day, C L.]]	+	[[Category: Day, C L]]
-	[[Category: Eaton-Rye, J J.]]	+	[[Category: Eaton-Rye, J J]]
-	[[Category: Hinds, M G.]]	+	[[Category: Hinds, M G]]
-	[[Category: Mabbitt, P D.]]	+	[[Category: Mabbitt, P D]]
-	[[Category: Rautureau, G J.P.]]	+	[[Category: Rautureau, G J.P]]
-	[[Category: Wilbanks, S M.]]	+	[[Category: Wilbanks, S M]]
	[[Category: Cyanobacteria]]		[[Category: Cyanobacteria]]
	[[Category: Helical bundle]]		[[Category: Helical bundle]]

OCA at 03:56, 29 September 2014

2014-09-29T03:56:52Z

←Older revision		Revision as of 03:56, 29 September 2014
Line 1:		Line 1:
-	[[~~Image~~:2kmf.~~png\|left~~\|200px]]	+	==Solution Structure of Psb27 from cyanobacterial photosystem II==
		+	<StructureSection load='2kmf' size='340' side='right' caption='[[2kmf]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2kmf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KMF FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">psb27 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1143 Synechocystis sp.])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kmf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kmf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2kmf RCSB], [http://www.ebi.ac.uk/pdbsum/2kmf PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/km/2kmf_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Psb27 is a highly conserved component of photosystem II. The three-dimensional structure has a well-defined helical core, composed of four helices arranged in a right-handed up-down-up-down fold, with a less ordered region of the structure located at the N-terminus. The position of conserved residues on the surface suggests conserved functional roles for distinct interconnected features encompassing a P-Phi-P loop, a polar patch spanning helices alpha3 and alpha4, and the N-terminal sequence.

-	~~{{STRUCTURE_2kmf\| PDB=2kmf \| SCENE= }}~~	+	Solution Structure of Psb27 from Cyanobacterial Photosystem II .,Mabbitt PD, Rautureau GJ, Day CL, Wilbanks SM, Eaton-Rye JJ, Hinds MG Biochemistry. 2009 Aug 27. PMID:19697958<ref>PMID:19697958</ref>

-	~~===Solution Structure~~ of ~~Psb27 from cyanobacterial photosystem II===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19697958}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2kmf]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Synechocystis_sp~~. ~~Synechocystis sp.]. Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2KMF OCA].~~	+

	==See Also==		==See Also==
	*[[Photosystem II\|Photosystem II]]		*[[Photosystem II\|Photosystem II]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:019697958<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Synechocystis sp.]]		[[Category: Synechocystis sp.]]
	[[Category: Day, C L.]]		[[Category: Day, C L.]]

OCA at 10:28, 20 October 2012

2012-10-20T10:28:24Z

←Older revision		Revision as of 10:28, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[2kmf]] is a 1 chain structure ~~of [[Photosystem II]]~~ with sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMF OCA].	+	[[2kmf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMF OCA].

	==See Also==		==See Also==

OCA: Protected "2kmf" [edit=sysop:move=sysop]

2012-07-26T02:14:16Z

Protected "2kmf" [edit=sysop:move=sysop]

←Older revision

Revision as of 02:14, 26 July 2012

OCA at 02:14, 26 July 2012

2012-07-26T02:14:14Z

←Older revision		Revision as of 02:14, 26 July 2012
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-	{{Seed}}
	[[Image:2kmf.png\|left\|200px]]		[[Image:2kmf.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2kmf", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2kmf\| PDB=2kmf \| SCENE= }}		{{STRUCTURE_2kmf\| PDB=2kmf \| SCENE= }}

	===Solution Structure of Psb27 from cyanobacterial photosystem II===		===Solution Structure of Psb27 from cyanobacterial photosystem II===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19697958}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19697958 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19697958}}		{{ABSTRACT_PUBMED_19697958}}

	==About this Structure==		==About this Structure==
-	~~2KMF~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMF OCA].	+	[[2kmf]] is a 1 chain structure of [[Photosystem II]] with sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMF OCA].
		+
		+	==See Also==
		+	*[[Photosystem II\|Photosystem II]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19697958~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019697958</ref><references group="xtra"/>
	[[Category: Synechocystis sp.]]		[[Category: Synechocystis sp.]]
	[[Category: Day, C L.]]		[[Category: Day, C L.]]
Line 36:		Line 27:
	[[Category: Photosystem ii]]		[[Category: Photosystem ii]]
	[[Category: Psb27]]		[[Category: Psb27]]
-	[[Category: Structure]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 30 08:39:01 2009''