2o6q - Revision history

OCA at 08:56, 25 October 2023

2023-10-25T08:56:29Z

←Older revision		Revision as of 08:56, 25 October 2023
Line 3:		Line 3:
	<StructureSection load='2o6q' size='340' side='right'caption='[[2o6q]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2o6q' size='340' side='right'caption='[[2o6q]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2o6q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Bdellostoma_burgeri Bdellostoma~~ burgeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O6Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O6Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2o6q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Eptatretus_burgeri Eptatretus burgeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O6Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O6Q FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[2o6r\|2o6r]], [[2o6s\|2o6s]]</div></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">VLRA ([https://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=~~5&~~id=7764 Bdellostoma burgeri])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o6q OCA], [https://pdbe.org/2o6q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o6q RCSB], [https://www.ebi.ac.uk/pdbsum/2o6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o6q ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o6q OCA], [https://pdbe.org/2o6q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o6q RCSB], [https://www.ebi.ac.uk/pdbsum/2o6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o6q ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q32R26_EPTBU Q32R26_EPTBU]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bdellostoma~~ burgeri]]	+	[[Category: Eptatretus burgeri]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Kim~~, H M~~]]	+	[[Category: Kim HM]]
-	[[Category: Lee~~, J O~~]]	+	[[Category: Lee JO]]
-	[[Category: Oh~~, S C]]~~	+	[[Category: Oh SC]]
-	~~[[Category: Immune system]]~~	+
-	~~[[Category: Leucine-rich repeat protein]]~~	+
-	~~[[Category: Lrr~~]]	+

OCA at 16:01, 8 June 2021

2021-06-08T16:01:38Z

←Older revision		Revision as of 16:01, 8 June 2021
Line 1:		Line 1:

	==Structural diversity of the hagfish Variable Lymphocyte Receptors A29==		==Structural diversity of the hagfish Variable Lymphocyte Receptors A29==
-	<StructureSection load='2o6q' size='340' side='right' caption='[[2o6q]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='2o6q' size='340' side='right'caption='[[2o6q]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2o6q]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bdellostoma_burgeri Bdellostoma burgeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O6Q OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2O6Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2o6q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bdellostoma_burgeri Bdellostoma burgeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O6Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O6Q FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2o6r\|2o6r]], [[2o6s\|2o6s]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2o6r\|2o6r]], [[2o6s\|2o6s]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">VLRA ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7764 Bdellostoma burgeri])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">VLRA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7764 Bdellostoma burgeri])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2o6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o6q OCA], [~~http~~://pdbe.org/2o6q PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2o6q RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2o6q PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2o6q ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o6q OCA], [https://pdbe.org/2o6q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o6q RCSB], [https://www.ebi.ac.uk/pdbsum/2o6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o6q ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 29:		Line 29:

	==See Also==		==See Also==
-	*[[Variable lymphocyte receptor\|Variable lymphocyte receptor]]	+	*[[Variable lymphocyte receptor 3D structures\|Variable lymphocyte receptor 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 35:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Bdellostoma burgeri]]		[[Category: Bdellostoma burgeri]]
		+	[[Category: Large Structures]]
	[[Category: Kim, H M]]		[[Category: Kim, H M]]
	[[Category: Lee, J O]]		[[Category: Lee, J O]]

OCA at 06:56, 22 August 2018

2018-08-22T06:56:51Z

←Older revision		Revision as of 06:56, 22 August 2018
Line 1:		Line 1:
		+
	==Structural diversity of the hagfish Variable Lymphocyte Receptors A29==		==Structural diversity of the hagfish Variable Lymphocyte Receptors A29==
	<StructureSection load='2o6q' size='340' side='right' caption='[[2o6q]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2o6q' size='340' side='right' caption='[[2o6q]], [[Resolution\|resolution]] 2.50Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2o6r\|2o6r]], [[2o6s\|2o6s]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2o6r\|2o6r]], [[2o6s\|2o6s]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">VLRA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7764 Bdellostoma burgeri])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">VLRA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7764 Bdellostoma burgeri])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o6q OCA], [http://pdbe.org/2o6q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2o6q RCSB], [http://www.ebi.ac.uk/pdbsum/2o6q PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o6q OCA], [http://pdbe.org/2o6q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2o6q RCSB], [http://www.ebi.ac.uk/pdbsum/2o6q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2o6q ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o6/2o6q_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o6/2o6q_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 02:21, 8 February 2016

2016-02-08T02:21:11Z

←Older revision		Revision as of 02:21, 8 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o6q ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 06:57, 10 September 2015

2015-09-10T06:57:42Z

←Older revision		Revision as of 06:57, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2o6q' size='340' side='right' caption='[[2o6q]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2o6q' size='340' side='right' caption='[[2o6q]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2o6q]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Eptatretus_burgeri Eptatretus~~ burgeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O6Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O6Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2o6q]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bdellostoma_burgeri Bdellostoma burgeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O6Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O6Q FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2o6r\|2o6r]], [[2o6s\|2o6s]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2o6r\|2o6r]], [[2o6s\|2o6s]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">VLRA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7764 ~~Eptatretus~~ burgeri])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">VLRA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7764 Bdellostoma burgeri])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o6q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o6q RCSB], [http://www.ebi.ac.uk/pdbsum/2o6q PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o6q OCA], [http://pdbe.org/2o6q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2o6q RCSB], [http://www.ebi.ac.uk/pdbsum/2o6q PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2o6q" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Eptatretus~~ burgeri]]	+	[[Category: Bdellostoma burgeri]]
	[[Category: Kim, H M]]		[[Category: Kim, H M]]
	[[Category: Lee, J O]]		[[Category: Lee, J O]]

OCA at 13:28, 19 January 2015

2015-01-19T13:28:24Z

←Older revision		Revision as of 13:28, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2o6q]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Eptatretus_burgeri Eptatretus burgeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O6Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O6Q FirstGlance]. <br>		<table><tr><td colspan='2'>[[2o6q]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Eptatretus_burgeri Eptatretus burgeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O6Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O6Q FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2o6r\|2o6r]], [[2o6s\|2o6s]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2o6r\|2o6r]], [[2o6s\|2o6s]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">VLRA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7764 Eptatretus burgeri])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">VLRA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7764 Eptatretus burgeri])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o6q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o6q RCSB], [http://www.ebi.ac.uk/pdbsum/2o6q PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o6q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o6q RCSB], [http://www.ebi.ac.uk/pdbsum/2o6q PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Eptatretus burgeri]]		[[Category: Eptatretus burgeri]]
-	[[Category: Kim, H M.]]	+	[[Category: Kim, H M]]
-	[[Category: Lee, J O.]]	+	[[Category: Lee, J O]]
-	[[Category: Oh, S C.]]	+	[[Category: Oh, S C]]
	[[Category: Immune system]]		[[Category: Immune system]]
	[[Category: Leucine-rich repeat protein]]		[[Category: Leucine-rich repeat protein]]
	[[Category: Lrr]]		[[Category: Lrr]]

OCA at 04:32, 29 September 2014

2014-09-29T04:32:45Z

←Older revision		Revision as of 04:32, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2o6q.~~png~~\|~~left~~\|200px]]	+	==Structural diversity of the hagfish Variable Lymphocyte Receptors A29==
		+	<StructureSection load='2o6q' size='340' side='right' caption='[[2o6q]], [[Resolution\|resolution]] 2.50Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2o6q]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Eptatretus_burgeri Eptatretus burgeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O6Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O6Q FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2o6r\|2o6r]], [[2o6s\|2o6s]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">VLRA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7764 Eptatretus burgeri])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o6q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o6q RCSB], [http://www.ebi.ac.uk/pdbsum/2o6q PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o6/2o6q_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Variable lymphocyte receptors (VLRs) are recently discovered leucine-rich repeat (LRR) family proteins that mediate adaptive immune responses in jawless fish. Phylogenetically it is the oldest adaptive immune receptor and the first one with a non-immunoglobulin fold. We present the crystal structures of one VLR-A and two VLR-B clones from the inshore hagfish. The hagfish VLRs have the characteristic horseshoe-shaped structure of LRR family proteins. The backbone structures of their LRR modules are highly homologous, and the sequence variation is concentrated on the concave surface of the protein. The conservation of key residues suggests that our structures are likely to represent the LRR structures of the entire repertoire of jawless fish VLRs. The analysis of sequence variability, prediction of protein interaction surfaces, amino acid composition analysis, and structural comparison with other LRR proteins suggest that the hypervariable concave surface is the most probable antigen binding site of the VLR.

-	~~{{STRUCTURE_2o6q\| PDB=2o6q \| SCENE= }}~~	+	Structural diversity of the hagfish variable lymphocyte receptors.,Kim HM, Oh SC, Lim KJ, Kasamatsu J, Heo JY, Park BS, Lee H, Yoo OJ, Kasahara M, Lee JO J Biol Chem. 2007 Mar 2;282(9):6726-32. Epub 2006 Dec 27. PMID:17192264<ref>PMID:17192264</ref>

-	~~===Structural diversity~~ of the ~~hagfish Variable Lymphocyte Receptors A29===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17192264}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2o6q]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Eptatretus_burgeri Eptatretus burgeri]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2O6Q OCA].~~	+

	==See Also==		==See Also==
	*[[Variable lymphocyte receptor\|Variable lymphocyte receptor]]		*[[Variable lymphocyte receptor\|Variable lymphocyte receptor]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:017192264<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Eptatretus burgeri]]		[[Category: Eptatretus burgeri]]
	[[Category: Kim, H M.]]		[[Category: Kim, H M.]]

OCA at 08:34, 20 October 2012

2012-10-20T08:34:36Z

←Older revision		Revision as of 08:34, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[2o6q]] is a 1 chain structure ~~of [[Variable lymphocyte receptor]]~~ with sequence from [http://en.wikipedia.org/wiki/Eptatretus_burgeri Eptatretus burgeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O6Q OCA].	+	[[2o6q]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Eptatretus_burgeri Eptatretus burgeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O6Q OCA].

	==See Also==		==See Also==

OCA: Protected "2o6q" [edit=sysop:move=sysop]

2012-07-25T19:58:25Z

Protected "2o6q" [edit=sysop:move=sysop]

←Older revision

Revision as of 19:58, 25 July 2012

OCA at 19:58, 25 July 2012

2012-07-25T19:58:23Z

←Older revision		Revision as of 19:58, 25 July 2012
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-	{{Seed}}
	[[Image:2o6q.png\|left\|200px]]		[[Image:2o6q.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2o6q", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_2o6q\| PDB=2o6q \| SCENE= }}		{{STRUCTURE_2o6q\| PDB=2o6q \| SCENE= }}

	===Structural diversity of the hagfish Variable Lymphocyte Receptors A29===		===Structural diversity of the hagfish Variable Lymphocyte Receptors A29===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17192264}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17192264 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_17192264}}		{{ABSTRACT_PUBMED_17192264}}

	==About this Structure==		==About this Structure==
-	~~2O6Q~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Eptatretus_burgeri Eptatretus burgeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O6Q OCA].	+	[[2o6q]] is a 1 chain structure of [[Variable lymphocyte receptor]] with sequence from [http://en.wikipedia.org/wiki/Eptatretus_burgeri Eptatretus burgeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O6Q OCA].
		+
		+	==See Also==
		+	*[[Variable lymphocyte receptor\|Variable lymphocyte receptor]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17192264~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017192264</ref><references group="xtra"/>
	[[Category: Eptatretus burgeri]]		[[Category: Eptatretus burgeri]]
	[[Category: Kim, H M.]]		[[Category: Kim, H M.]]
Line 31:		Line 22:
	[[Category: Leucine-rich repeat protein]]		[[Category: Leucine-rich repeat protein]]
	[[Category: Lrr]]		[[Category: Lrr]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 18:06:39 2009''