2o8r - Revision history

OCA at 00:15, 28 December 2023

2023-12-28T00:15:43Z

←Older revision		Revision as of 00:15, 28 December 2023
Line 3:		Line 3:
	<StructureSection load='2o8r' size='340' side='right'caption='[[2o8r]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='2o8r' size='340' side='right'caption='[[2o8r]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2o8r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_33277 Atcc 33277~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O8R FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2o8r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O8R FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.7Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b></td><td class="sblockDat">ppk ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=837 ATCC 33277])</td></tr>~~	+
-	~~<tr id='activity~~'>~~<td class="sblockLbl"><b>Activity:~~</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Polyphosphate_kinase Polyphosphate kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.1 2.7.4.1] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8r OCA], [https://pdbe.org/2o8r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o8r RCSB], [https://www.ebi.ac.uk/pdbsum/2o8r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o8r ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2o8r TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8r OCA], [https://pdbe.org/2o8r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o8r RCSB], [https://www.ebi.ac.uk/pdbsum/2o8r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o8r ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2o8r TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/Q7MTR1_PORGI Q7MTR1_PORGI]] Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP).[RuleBase:RU003800]	+	[https://www.uniprot.org/uniprot/Q7MTR1_PORGI Q7MTR1_PORGI] Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP).[RuleBase:RU003800]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 33277]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Polyphosphate kinase~~]]	+	[[Category: Porphyromonas gingivalis]]
-	[[Category: Adams~~, J M~~]]	+	[[Category: Adams JM]]
-	[[Category: Almo~~, S C~~]]	+	[[Category: Almo SC]]
-	[[Category: Burley~~, S K~~]]	+	[[Category: Burley SK]]
-	[[Category: Dickey, M]]	+	[[Category: Dickey M]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Ozyurt S]]
-	[[Category: Ozyurt, S]]	+	[[Category: Patskovsky Y]]
-	[[Category: Patskovsky, Y]]	+	[[Category: Sauder JM]]
-	[[Category: Sauder~~, J M~~]]	+	[[Category: Toro R]]
-	[[Category: Toro, R]]	+	[[Category: Wasserman SR]]
-	[[Category: Wasserman~~, S R]]~~	+
-	~~[[Category: Kinase]]~~	+
-	~~[[Category: Nysgrc]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 18:14, 20 October 2021

2021-10-20T18:14:47Z

←Older revision		Revision as of 18:14, 20 October 2021
Line 1:		Line 1:

	==Crystal Structure of Polyphosphate Kinase from Porphyromonas Gingivalis==		==Crystal Structure of Polyphosphate Kinase from Porphyromonas Gingivalis==
-	<StructureSection load='2o8r' size='340' side='right'caption='[[2o8r]]' scene=''>	+	<StructureSection load='2o8r' size='340' side='right'caption='[[2o8r]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O8R FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2o8r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_33277 Atcc 33277]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O8R FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8r OCA], [https://pdbe.org/2o8r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o8r RCSB], [https://www.ebi.ac.uk/pdbsum/2o8r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o8r ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2o8r TOPSAN]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ppk ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=837 ATCC 33277])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Polyphosphate_kinase Polyphosphate kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.1 2.7.4.1] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8r OCA], [https://pdbe.org/2o8r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o8r RCSB], [https://www.ebi.ac.uk/pdbsum/2o8r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o8r ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2o8r TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/Q7MTR1_PORGI Q7MTR1_PORGI]] Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP).[RuleBase:RU003800]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 18:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 33277]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Adams JM]]	+	[[Category: Polyphosphate kinase]]
-	[[Category: Almo SC]]	+	[[Category: Adams, J M]]
-	[[Category: Burley SK]]	+	[[Category: Almo, S C]]
-	[[Category: Dickey M]]	+	[[Category: Burley, S K]]
-	[[Category: Ozyurt S]]	+	[[Category: Dickey, M]]
-	[[Category: Patskovsky Y]]	+	[[Category: Structural genomic]]
-	[[Category: Sauder JM]]	+	[[Category: Ozyurt, S]]
-	[[Category: Toro R]]	+	[[Category: Patskovsky, Y]]
-	[[Category: Wasserman SR]]	+	[[Category: Sauder, J M]]
		+	[[Category: Toro, R]]
		+	[[Category: Wasserman, S R]]
		+	[[Category: Kinase]]
		+	[[Category: Nysgrc]]
		+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
		+	[[Category: PSI, Protein structure initiative]]
		+	[[Category: Transferase]]

OCA at 12:49, 9 June 2021

2021-06-09T12:49:35Z

←Older revision		Revision as of 12:49, 9 June 2021
Line 1:		Line 1:

	==Crystal Structure of Polyphosphate Kinase from Porphyromonas Gingivalis==		==Crystal Structure of Polyphosphate Kinase from Porphyromonas Gingivalis==
-	<StructureSection load='2o8r' size='340' side='right' caption='[[2o8r]]~~, [[Resolution\|resolution]] 2.70Å~~' scene=''>	+	<StructureSection load='2o8r' size='340' side='right'caption='[[2o8r]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>~~[[2o8r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_33277 Atcc 33277].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8R OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2O8R FirstGlance]. <br>	+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O8R FirstGlance]. <br>
-	</td></tr>~~<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8r OCA], [https://pdbe.org/2o8r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o8r RCSB], [https://www.ebi.ac.uk/pdbsum/2o8r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o8r ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2o8r TOPSAN]</span></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>~~	+
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ppk ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=837 ATCC 33277])</td></tr>~~	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Polyphosphate_kinase Polyphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.1 2.7.4.1] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2o8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8r OCA], [~~http~~://pdbe.org/2o8r PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2o8r RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2o8r PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2o8r ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/2o8r TOPSAN]</span></td></tr>	+
	</table>		</table>
-	== Function ==
-	[[http://www.uniprot.org/uniprot/Q7MTR1_PORGI Q7MTR1_PORGI]] Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP).[RuleBase:RU003800]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 18:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 33277]]~~	+	[[Category: Large Structures]]
-	~~[[Category: Polyphosphate kinase~~]]	+	[[Category: Adams JM]]
-	[[Category: Adams~~, J M~~]]	+	[[Category: Almo SC]]
-	[[Category: Almo~~, S C~~]]	+	[[Category: Burley SK]]
-	[[Category: Burley~~, S K~~]]	+	[[Category: Dickey M]]
-	[[Category: Dickey, M]]	+	[[Category: Ozyurt S]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Patskovsky Y]]
-	[[Category: Ozyurt, S]]	+	[[Category: Sauder JM]]
-	[[Category: Patskovsky, Y]]	+	[[Category: Toro R]]
-	[[Category: Sauder~~, J M~~]]	+	[[Category: Wasserman SR]]
-	[[Category: Toro, R]]	+
-	[[Category: Wasserman~~, S R]]~~	+
-	~~[[Category: Kinase]]~~	+
-	~~[[Category: Nysgrc]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 07:01, 22 August 2018

2018-08-22T07:01:09Z

←Older revision		Revision as of 07:01, 22 August 2018
Line 1:		Line 1:
		+
	==Crystal Structure of Polyphosphate Kinase from Porphyromonas Gingivalis==		==Crystal Structure of Polyphosphate Kinase from Porphyromonas Gingivalis==
	<StructureSection load='2o8r' size='340' side='right' caption='[[2o8r]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='2o8r' size='340' side='right' caption='[[2o8r]], [[Resolution\|resolution]] 2.70Å' scene=''>
Line 7:		Line 8:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ppk ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=837 ATCC 33277])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ppk ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=837 ATCC 33277])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Polyphosphate_kinase Polyphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.1 2.7.4.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Polyphosphate_kinase Polyphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.1 2.7.4.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8r OCA], [http://pdbe.org/2o8r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2o8r RCSB], [http://www.ebi.ac.uk/pdbsum/2o8r PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2o8r TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8r OCA], [http://pdbe.org/2o8r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2o8r RCSB], [http://www.ebi.ac.uk/pdbsum/2o8r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2o8r ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/2o8r TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 15:		Line 16:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o8/2o8r_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o8/2o8r_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 07:34, 8 February 2016

2016-02-08T07:34:57Z

←Older revision		Revision as of 07:34, 8 February 2016
Line 19:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o8r ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 09:18, 10 September 2015

2015-09-10T09:18:19Z

←Older revision		Revision as of 09:18, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2o8r' size='340' side='right' caption='[[2o8r]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='2o8r' size='340' side='right' caption='[[2o8r]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2o8r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Porphyromonas_gingivalis Porphyromonas gingivalis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O8R FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2o8r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_33277 Atcc 33277]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O8R FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ppk ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=837 ~~Porphyromonas gingivalis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ppk ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=837 ATCC 33277])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Polyphosphate_kinase Polyphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.1 2.7.4.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Polyphosphate_kinase Polyphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.1 2.7.4.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o8r RCSB], [http://www.ebi.ac.uk/pdbsum/2o8r PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2o8r TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8r OCA], [http://pdbe.org/2o8r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2o8r RCSB], [http://www.ebi.ac.uk/pdbsum/2o8r PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2o8r TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/Q7MTR1_PORGI Q7MTR1_PORGI]] Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP).[RuleBase:RU003800]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 33277]]
	[[Category: Polyphosphate kinase]]		[[Category: Polyphosphate kinase]]
-	[[Category: Porphyromonas gingivalis]]
	[[Category: Adams, J M]]		[[Category: Adams, J M]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]

OCA at 13:24, 6 November 2014

2014-11-06T13:24:35Z

←Older revision		Revision as of 13:24, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2o8r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O8R FirstGlance]. <br>		<table><tr><td colspan='2'>[[2o8r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O8R FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ppk ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=837 Porphyromonas gingivalis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ppk ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=837 Porphyromonas gingivalis])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Polyphosphate_kinase Polyphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.1 2.7.4.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Polyphosphate_kinase Polyphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.1 2.7.4.1] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o8r RCSB], [http://www.ebi.ac.uk/pdbsum/2o8r PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2o8r TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o8r RCSB], [http://www.ebi.ac.uk/pdbsum/2o8r PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2o8r TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 23:
	[[Category: Polyphosphate kinase]]		[[Category: Polyphosphate kinase]]
	[[Category: Porphyromonas gingivalis]]		[[Category: Porphyromonas gingivalis]]
-	[[Category: Adams, J M.]]	+	[[Category: Adams, J M]]
-	[[Category: Almo, S C.]]	+	[[Category: Almo, S C]]
-	[[Category: Burley, S K.]]	+	[[Category: Burley, S K]]
-	[[Category: Dickey, M.]]	+	[[Category: Dickey, M]]
-	[[Category: ~~NYSGXRC, New York SGX Research Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Ozyurt, S.]]	+	[[Category: Ozyurt, S]]
-	[[Category: Patskovsky, Y.]]	+	[[Category: Patskovsky, Y]]
-	[[Category: Sauder, J M.]]	+	[[Category: Sauder, J M]]
-	[[Category: Toro, R.]]	+	[[Category: Toro, R]]
-	[[Category: Wasserman, S R.]]	+	[[Category: Wasserman, S R]]
	[[Category: Kinase]]		[[Category: Kinase]]
-	[[Category: New york sgx research center for structural genomic]]
-	[[Category: New york structural genomics research consortium]]
	[[Category: Nysgrc]]		[[Category: Nysgrc]]
-	[[Category: ~~Nysgxrc~~]]	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 20:00, 30 September 2014

2014-09-30T20:00:27Z

←Older revision		Revision as of 20:00, 30 September 2014
Line 1:		Line 1:
-	~~[[Image:2o8r.png\|left\|200px]]~~	+	==Crystal Structure of Polyphosphate Kinase from Porphyromonas Gingivalis==
-		+	<StructureSection load='2o8r' size='340' side='right' caption='[[2o8r]], [[Resolution\|resolution]] 2.70Å' scene=''>
-	~~{{STRUCTURE_2o8r\| PDB=2o8r \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2o8r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O8R FirstGlance]. <br>
-	===Crystal Structure of Polyphosphate Kinase from Porphyromonas Gingivalis===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ppk ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=837 Porphyromonas gingivalis])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Polyphosphate_kinase Polyphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.1 2.7.4.1] </span></td></tr>
-	[[2o8r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8R OCA].	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o8r RCSB], [http://www.ebi.ac.uk/pdbsum/2o8r PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2o8r TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o8/2o8r_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Polyphosphate kinase]]		[[Category: Polyphosphate kinase]]
	[[Category: Porphyromonas gingivalis]]		[[Category: Porphyromonas gingivalis]]

OCA: Protected "2o8r" [edit=sysop:move=sysop]

2013-01-07T15:00:07Z

Protected "2o8r" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:00, 7 January 2013

OCA at 15:00, 7 January 2013

2013-01-07T15:00:05Z

←Older revision		Revision as of 15:00, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2o8r.png\|left\|200px]]		[[Image:2o8r.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2o8r", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2o8r\| PDB=2o8r \| SCENE= }}		{{STRUCTURE_2o8r\| PDB=2o8r \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~2O8R~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8R OCA].	+	[[2o8r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8R OCA].
	[[Category: Polyphosphate kinase]]		[[Category: Polyphosphate kinase]]
	[[Category: Porphyromonas gingivalis]]		[[Category: Porphyromonas gingivalis]]
Line 36:		Line 29:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Transferase]]		[[Category: Transferase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 18:09:22 2008''