2obm - Revision history

OCA at 10:34, 30 August 2023

2023-08-30T10:34:31Z

←Older revision		Revision as of 10:34, 30 August 2023
Line 3:		Line 3:
	<StructureSection load='2obm' size='340' side='right'caption='[[2obm]], [[Resolution\|resolution]] 2.25Å' scene=''>		<StructureSection load='2obm' size='340' side='right'caption='[[2obm]], [[Resolution\|resolution]] 2.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2obm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Eco27 Eco27~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OBM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OBM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2obm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_O127:H6_str._E2348/69 Escherichia coli O127:H6 str. E2348/69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OBM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OBM FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ADP:ADENOSINE~~-~~5-DIPHOSPHATE'>ADP</scene>~~, ~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.25Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[2obl\|2obl]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">escN ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=574521 ECO27])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2obm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2obm OCA], [https://pdbe.org/2obm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2obm RCSB], [https://www.ebi.ac.uk/pdbsum/2obm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2obm ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2obm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2obm OCA], [https://pdbe.org/2obm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2obm RCSB], [https://www.ebi.ac.uk/pdbsum/2obm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2obm ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/B7UMA6_ECO27 B7UMA6_ECO27]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Eco27~~]]	+	[[Category: Escherichia coli O127:H6 str. E2348/69]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Deng, W]]	+	[[Category: Deng W]]
-	[[Category: Finlay~~, B B~~]]	+	[[Category: Finlay BB]]
-	[[Category: Strynadka~~, N C.J~~]]	+	[[Category: Strynadka NCJ]]
-	[[Category: Vuckovic, M]]	+	[[Category: Vuckovic M]]
-	[[Category: Zarivach, R]]	+	[[Category: Zarivach R]]
-	~~[[Category: Atpase]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 12:52, 9 June 2021

2021-06-09T12:52:03Z

←Older revision		Revision as of 12:52, 9 June 2021
Line 1:		Line 1:

	==Structural and biochemical analysis of a prototypical ATPase from the type III secretion system of pathogenic bacteria==		==Structural and biochemical analysis of a prototypical ATPase from the type III secretion system of pathogenic bacteria==
-	<StructureSection load='2obm' size='340' side='right' caption='[[2obm]], [[Resolution\|resolution]] 2.25Å' scene=''>	+	<StructureSection load='2obm' size='340' side='right'caption='[[2obm]], [[Resolution\|resolution]] 2.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2obm]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Eco27 Eco27]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OBM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2OBM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2obm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Eco27 Eco27]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OBM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OBM FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2obl\|2obl]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2obl\|2obl]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">escN ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=574521 ECO27])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">escN ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=574521 ECO27])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2obm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2obm OCA], [~~http~~://pdbe.org/2obm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2obm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2obm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2obm ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2obm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2obm OCA], [https://pdbe.org/2obm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2obm RCSB], [https://www.ebi.ac.uk/pdbsum/2obm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2obm ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ob/2obm_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ob/2obm_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Eco27]]		[[Category: Eco27]]
		+	[[Category: Large Structures]]
	[[Category: Deng, W]]		[[Category: Deng, W]]
	[[Category: Finlay, B B]]		[[Category: Finlay, B B]]

OCA at 08:56, 18 October 2017

2017-10-18T08:56:26Z

←Older revision		Revision as of 08:56, 18 October 2017
Line 1:		Line 1:
		+
	==Structural and biochemical analysis of a prototypical ATPase from the type III secretion system of pathogenic bacteria==		==Structural and biochemical analysis of a prototypical ATPase from the type III secretion system of pathogenic bacteria==
	<StructureSection load='2obm' size='340' side='right' caption='[[2obm]], [[Resolution\|resolution]] 2.25Å' scene=''>		<StructureSection load='2obm' size='340' side='right' caption='[[2obm]], [[Resolution\|resolution]] 2.25Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2obl\|2obl]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2obl\|2obl]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">escN ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=574521 ECO27])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">escN ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=574521 ECO27])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2obm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2obm OCA], [http://pdbe.org/2obm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2obm RCSB], [http://www.ebi.ac.uk/pdbsum/2obm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2obm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2obm OCA], [http://pdbe.org/2obm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2obm RCSB], [http://www.ebi.ac.uk/pdbsum/2obm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2obm ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 06:52, 7 February 2016

2016-02-07T06:52:14Z

←Older revision		Revision as of 06:52, 7 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2obm ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 22:54, 9 September 2015

2015-09-09T22:54:01Z

←Older revision		Revision as of 22:54, 9 September 2015
Line 2:		Line 2:
	<StructureSection load='2obm' size='340' side='right' caption='[[2obm]], [[Resolution\|resolution]] 2.25Å' scene=''>		<StructureSection load='2obm' size='340' side='right' caption='[[2obm]], [[Resolution\|resolution]] 2.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2obm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli_o127:h6_str._e2348/69 Escherichia coli o127:h6 str. e2348/69~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OBM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OBM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2obm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Eco27 Eco27]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OBM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OBM FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2obl\|2obl]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2obl\|2obl]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">escN ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=574521 ~~Escherichia coli O127:H6 str. E2348/69~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">escN ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=574521 ECO27])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2obm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2obm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2obm RCSB], [http://www.ebi.ac.uk/pdbsum/2obm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2obm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2obm OCA], [http://pdbe.org/2obm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2obm RCSB], [http://www.ebi.ac.uk/pdbsum/2obm PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2obm" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia coli o127:h6 str. e2348/69~~]]	+	[[Category: Eco27]]
	[[Category: Deng, W]]		[[Category: Deng, W]]
	[[Category: Finlay, B B]]		[[Category: Finlay, B B]]

OCA at 16:42, 19 January 2015

2015-01-19T16:42:03Z

←Older revision		Revision as of 16:42, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2obm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_o127:h6_str._e2348/69 Escherichia coli o127:h6 str. e2348/69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OBM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OBM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2obm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_o127:h6_str._e2348/69 Escherichia coli o127:h6 str. e2348/69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OBM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OBM FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2obl\|2obl]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2obl\|2obl]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">escN ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=574521 Escherichia coli O127:H6 str. E2348/69])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">escN ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=574521 Escherichia coli O127:H6 str. E2348/69])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2obm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2obm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2obm RCSB], [http://www.ebi.ac.uk/pdbsum/2obm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2obm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2obm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2obm RCSB], [http://www.ebi.ac.uk/pdbsum/2obm PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli o127:h6 str. e2348/69]]		[[Category: Escherichia coli o127:h6 str. e2348/69]]
-	[[Category: Deng, W.]]	+	[[Category: Deng, W]]
-	[[Category: Finlay, B B.]]	+	[[Category: Finlay, B B]]
-	[[Category: Strynadka, N C.J.]]	+	[[Category: Strynadka, N C.J]]
-	[[Category: Vuckovic, M.]]	+	[[Category: Vuckovic, M]]
-	[[Category: Zarivach, R.]]	+	[[Category: Zarivach, R]]
	[[Category: Atpase]]		[[Category: Atpase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 19:24, 30 September 2014

2014-09-30T19:24:52Z

←Older revision		Revision as of 19:24, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2obm.~~png~~\|~~left~~\|200px]]	+	==Structural and biochemical analysis of a prototypical ATPase from the type III secretion system of pathogenic bacteria==
		+	<StructureSection load='2obm' size='340' side='right' caption='[[2obm]], [[Resolution\|resolution]] 2.25Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2obm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_o127:h6_str._e2348/69 Escherichia coli o127:h6 str. e2348/69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OBM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OBM FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2obl\|2obl]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">escN ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=574521 Escherichia coli O127:H6 str. E2348/69])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2obm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2obm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2obm RCSB], [http://www.ebi.ac.uk/pdbsum/2obm PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ob/2obm_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The type III secretion system (T3SS) ATPase is the conserved and essential inner-membrane component involved in the initial stages of selective secretion of specialized T3SS virulence effector proteins from the bacterial cytoplasm through to the infected host cell, a process crucial to subsequent pathogenicity. Here we present the 1.8-A-resolution crystal structure of the catalytic domain of the prototypical T3SS ATPase EscN from enteropathogenic Escherichia coli (EPEC). Along with in vitro and in vivo mutational analysis, our data show that the T3SS ATPases share similarity with the F1 ATPases but have important structural and sequence differences that dictate their unique secretory role. We also show that T3SS ATPase activity is dependent on EscN oligomerization and describe the molecular features and possible functional implications of a hexameric ring model.

-	~~{{STRUCTURE_2obm\| PDB=2obm \| SCENE= }}~~	+	Structural analysis of a prototypical ATPase from the type III secretion system.,Zarivach R, Vuckovic M, Deng W, Finlay BB, Strynadka NC Nat Struct Mol Biol. 2007 Feb;14(2):131-7. Epub 2007 Jan 21. PMID:17237797<ref>PMID:17237797</ref>

-	~~===Structural and biochemical analysis~~ of ~~a prototypical ATPase from~~ the ~~type III secretion system of pathogenic bacteria===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17237797}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2obm]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Escherichia_coli_o127:h6_str~~.~~_e2348~~/~~69 Escherichia coli o127:h6 str. e2348/69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OBM OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:017237797<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Escherichia coli o127:h6 str. e2348/69]]		[[Category: Escherichia coli o127:h6 str. e2348/69]]
	[[Category: Deng, W.]]		[[Category: Deng, W.]]

OCA: Protected "2obm" [edit=sysop:move=sysop]

2013-01-07T11:45:13Z

Protected "2obm" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:45, 7 January 2013

OCA at 11:45, 7 January 2013

2013-01-07T11:45:10Z

←Older revision		Revision as of 11:45, 7 January 2013
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-	{{Seed}}
	[[Image:2obm.png\|left\|200px]]		[[Image:2obm.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_2obm\| PDB=2obm \| SCENE= }}		{{STRUCTURE_2obm\| PDB=2obm \| SCENE= }}

	===Structural and biochemical analysis of a prototypical ATPase from the type III secretion system of pathogenic bacteria===		===Structural and biochemical analysis of a prototypical ATPase from the type III secretion system of pathogenic bacteria===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17237797}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17237797 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_17237797}}		{{ABSTRACT_PUBMED_17237797}}

	==About this Structure==		==About this Structure==
-	~~2OBM~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Bacteria Bacteria~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OBM OCA].	+	[[2obm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_o127:h6_str._e2348/69 Escherichia coli o127:h6 str. e2348/69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OBM OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17237797~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017237797</ref><references group="xtra"/>
-	[[Category: ~~Bacteria~~]]	+	[[Category: Escherichia coli o127:h6 str. e2348/69]]
	[[Category: Deng, W.]]		[[Category: Deng, W.]]
	[[Category: Finlay, B B.]]		[[Category: Finlay, B B.]]
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	[[Category: Atpase]]		[[Category: Atpase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jun 4 07:38:18 2009''

OCA at 04:38, 4 June 2009

2009-06-04T04:38:19Z

←Older revision		Revision as of 04:38, 4 June 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	2OBM is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia coli~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OBM OCA].	+	2OBM is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OBM OCA].

	==Reference==		==Reference==
	<ref group="xtra">PMID:17237797</ref><references group="xtra"/>		<ref group="xtra">PMID:17237797</ref><references group="xtra"/>
-	[[Category: ~~Escherichia coli~~]]	+	[[Category: Bacteria]]
	[[Category: Deng, W.]]		[[Category: Deng, W.]]
	[[Category: Finlay, B B.]]		[[Category: Finlay, B B.]]
Line 31:		Line 31:
	[[Category: Zarivach, R.]]		[[Category: Zarivach, R.]]
	[[Category: Atpase]]		[[Category: Atpase]]
		+	[[Category: Hydrolase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Feb 16 12~~:05:00 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jun 4 07:38:18 2009''