2oqq - Revision history

OCA at 00:22, 28 December 2023

2023-12-28T00:22:14Z

←Older revision		Revision as of 00:22, 28 December 2023
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	==Crystal structure of HY5 leucine zipper homodimer from Arabidopsis thaliana==		==Crystal structure of HY5 leucine zipper homodimer from Arabidopsis thaliana==
-	<StructureSection load='2oqq' size='340' side='right'caption='[[2oqq]]' scene=''>	+	<StructureSection load='2oqq' size='340' side='right'caption='[[2oqq]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OQQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OQQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2oqq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OQQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OQQ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oqq OCA], [https://pdbe.org/2oqq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oqq RCSB], [https://www.ebi.ac.uk/pdbsum/2oqq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oqq ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oqq OCA], [https://pdbe.org/2oqq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oqq RCSB], [https://www.ebi.ac.uk/pdbsum/2oqq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oqq ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/HY5_ARATH HY5_ARATH] Transcription factor that promotes photomorphogenesis in light. Acts downstream of the light receptor network and directly affects transcription of light-induced genes. Specifically involved in the blue light specific pathway, suggesting that it participates in transmission of cryptochromes (CRY1 and CRY2) signals to downstream responses. In darkness, its degradation prevents the activation of light-induced genes.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 16:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oqq ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oqq ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The leucine zipper (LZ) domain of the HY5 transcription factor from Arabidopsis thaliana has unique primary structural properties, including major occupation by the Leu residues as well as two buried polar residues in the a positions and a localized distribution of charged and polar residues in the first three heptad repeats. In this study, we solved the crystal structure of the HY5 LZ domain and show that the peculiarities in the primary sequence yield unusual structural characteristics. For example, the HY5 LZ domain exhibits a bipartite charge distribution characterized by a highly negative electrostatic surface potential in its N-terminal half and a nearly neutral potential in its C-terminal half. The LZ N-terminal region also contains two consecutive putative trigger sites for dimerization of the coiled coils. In addition, two buried asparagines at a positions 19 and 33 in the HY5 LZ domain display distinct modes of polar interaction. Whereas Asn(19) shows a conformational flip-flop, Asn(33) is engaged in a permanent hydrogen bond network. CD spectropolarimetry and analytical ultracentrifugation experiments performed with versions of the HY5 LZ domain containing mutations in the a positions yielded further evidence that position a amino acid residues are crucial for achieving an oligomeric state and maintaining stability. However, a low correlation between position a amino acid preference, core packing geometry, and rotamer conformations suggests that the oligomeric state of the LZ domain is not governed entirely by known structural properties. Taken together, our results suggest structural factors conferring conformational integrity of the HY5 LZ homodimer that are more complicated than proposed previously.
		+
		+	Structural basis for the conformational integrity of the Arabidopsis thaliana HY5 leucine zipper homodimer.,Yoon MK, Kim HM, Choi G, Lee JO, Choi BS J Biol Chem. 2007 Apr 27;282(17):12989-3002. Epub 2007 Jan 29. PMID:17261584<ref>PMID:17261584</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 2oqq" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Arabidopsis thaliana]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Choi B-S]]		[[Category: Choi B-S]]

OCA at 13:03, 9 June 2021

2021-06-09T13:03:35Z

←Older revision		Revision as of 13:03, 9 June 2021
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	==Crystal structure of HY5 leucine zipper homodimer from Arabidopsis thaliana==		==Crystal structure of HY5 leucine zipper homodimer from Arabidopsis thaliana==
-	<StructureSection load='2oqq' size='340' side='right'caption='[[2oqq]]~~, [[Resolution\|resolution]] 2.00Å~~' scene=''>	+	<StructureSection load='2oqq' size='340' side='right'caption='[[2oqq]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>~~[[2oqq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OQQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2OQQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OQQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OQQ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2oqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oqq OCA], [~~http~~://pdbe.org/2oqq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2oqq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2oqq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2oqq ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oqq OCA], [https://pdbe.org/2oqq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oqq RCSB], [https://www.ebi.ac.uk/pdbsum/2oqq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oqq ProSAT]</span></td></tr>
	</table>		</table>
-	== Function ==
-	[[http://www.uniprot.org/uniprot/HY5_ARATH HY5_ARATH]] Transcription factor that promotes photomorphogenesis in light. Acts downstream of the light receptor network and directly affects transcription of light-induced genes. Specifically involved in the blue light specific pathway, suggesting that it participates in transmission of cryptochromes (CRY1 and CRY2) signals to downstream responses. In darkness, its degradation prevents the activation of light-induced genes.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 18:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Arath]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Choi, B S]]	+	[[Category: Choi B-S]]
-	[[Category: Choi, G]]	+	[[Category: Choi G]]
-	[[Category: Kim~~, H M~~]]	+	[[Category: Kim HM]]
-	[[Category: Lee, J O]]	+	[[Category: Lee J-O]]
-	[[Category: Yoon, M K]]	+	[[Category: Yoon M-K]]
-	~~[[Category: Homodimer leucine zipper]]~~	+
-	~~[[Category: Transcription~~]]	+

OCA at 07:19, 31 July 2019

2019-07-31T07:19:24Z

←Older revision		Revision as of 07:19, 31 July 2019
Line 1:		Line 1:

	==Crystal structure of HY5 leucine zipper homodimer from Arabidopsis thaliana==		==Crystal structure of HY5 leucine zipper homodimer from Arabidopsis thaliana==
-	<StructureSection load='2oqq' size='340' side='right' caption='[[2oqq]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='2oqq' size='340' side='right'caption='[[2oqq]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2oqq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OQQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OQQ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2oqq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OQQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OQQ FirstGlance]. <br>
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oq/2oqq_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oq/2oqq_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Arath]]		[[Category: Arath]]
		+	[[Category: Large Structures]]
	[[Category: Choi, B S]]		[[Category: Choi, B S]]
	[[Category: Choi, G]]		[[Category: Choi, G]]

OCA at 09:07, 18 October 2017

2017-10-18T09:07:15Z

←Older revision		Revision as of 09:07, 18 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of HY5 leucine zipper homodimer from Arabidopsis thaliana==		==Crystal structure of HY5 leucine zipper homodimer from Arabidopsis thaliana==
	<StructureSection load='2oqq' size='340' side='right' caption='[[2oqq]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2oqq' size='340' side='right' caption='[[2oqq]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2oqq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OQQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OQQ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2oqq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OQQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OQQ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oqq OCA], [http://pdbe.org/2oqq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2oqq RCSB], [http://www.ebi.ac.uk/pdbsum/2oqq PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oqq OCA], [http://pdbe.org/2oqq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2oqq RCSB], [http://www.ebi.ac.uk/pdbsum/2oqq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2oqq ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 05:31, 8 February 2016

2016-02-08T05:31:42Z

←Older revision		Revision as of 05:31, 8 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oqq ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 08:23, 10 September 2015

2015-09-10T08:23:01Z

←Older revision		Revision as of 08:23, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2oqq' size='340' side='right' caption='[[2oqq]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2oqq' size='340' side='right' caption='[[2oqq]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2oqq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Arabidopsis_thaliana Arabidopsis thaliana~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OQQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OQQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2oqq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OQQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OQQ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oqq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oqq RCSB], [http://www.ebi.ac.uk/pdbsum/2oqq PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oqq OCA], [http://pdbe.org/2oqq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2oqq RCSB], [http://www.ebi.ac.uk/pdbsum/2oqq PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Arabidopsis thaliana~~]]	+	[[Category: Arath]]
	[[Category: Choi, B S]]		[[Category: Choi, B S]]
	[[Category: Choi, G]]		[[Category: Choi, G]]

OCA at 20:59, 24 December 2014

2014-12-24T20:59:03Z

←Older revision		Revision as of 20:59, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2oqq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OQQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OQQ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2oqq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OQQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OQQ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oqq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oqq RCSB], [http://www.ebi.ac.uk/pdbsum/2oqq PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oqq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oqq RCSB], [http://www.ebi.ac.uk/pdbsum/2oqq PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/HY5_ARATH HY5_ARATH]] Transcription factor that promotes photomorphogenesis in light. Acts downstream of the light receptor network and directly affects transcription of light-induced genes. Specifically involved in the blue light specific pathway, suggesting that it participates in transmission of cryptochromes (CRY1 and CRY2) signals to downstream responses. In darkness, its degradation prevents the activation of light-induced genes.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 18:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
-	[[Category: Choi, B S.]]	+	[[Category: Choi, B S]]
-	[[Category: Choi, G.]]	+	[[Category: Choi, G]]
-	[[Category: Kim, H M.]]	+	[[Category: Kim, H M]]
-	[[Category: Lee, J O.]]	+	[[Category: Lee, J O]]
-	[[Category: Yoon, M K.]]	+	[[Category: Yoon, M K]]
	[[Category: Homodimer leucine zipper]]		[[Category: Homodimer leucine zipper]]
	[[Category: Transcription]]		[[Category: Transcription]]

OCA at 19:13, 30 September 2014

2014-09-30T19:13:47Z

←Older revision		Revision as of 19:13, 30 September 2014
Line 1:		Line 1:
-	~~[[Image:2oqq.png\|left\|200px]]~~	+	==Crystal structure of HY5 leucine zipper homodimer from Arabidopsis thaliana==
-		+	<StructureSection load='2oqq' size='340' side='right' caption='[[2oqq]], [[Resolution\|resolution]] 2.00Å' scene=''>
-	~~{{STRUCTURE_2oqq\| PDB=2oqq \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2oqq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OQQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OQQ FirstGlance]. <br>
-	===Crystal structure of HY5 leucine zipper homodimer from Arabidopsis thaliana===	+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oqq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oqq RCSB], [http://www.ebi.ac.uk/pdbsum/2oqq PDBsum]</span></td></tr>
-		+	<table>
-	~~{{ABSTRACT_PUBMED_017261584}}~~	+	== Evolutionary Conservation ==
-		+	[[Image:Consurf_key_small.gif\|200px\|right]]
-	==~~About this Structure~~==	+	Check<jmol>
-	[[2oqq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OQQ OCA].	+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oq/2oqq_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
	[[Category: Choi, B S.]]		[[Category: Choi, B S.]]

OCA: Protected "2oqq" [edit=sysop:move=sysop]

2013-01-07T14:10:21Z

Protected "2oqq" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:10, 7 January 2013

OCA at 14:10, 7 January 2013

2013-01-07T14:10:15Z

←Older revision		Revision as of 14:10, 7 January 2013
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-	{{Seed}}
	[[Image:2oqq.png\|left\|200px]]		[[Image:2oqq.png\|left\|200px]]

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	{{STRUCTURE_2oqq\| PDB=2oqq \| SCENE= }}		{{STRUCTURE_2oqq\| PDB=2oqq \| SCENE= }}

	===Crystal structure of HY5 leucine zipper homodimer from Arabidopsis thaliana===		===Crystal structure of HY5 leucine zipper homodimer from Arabidopsis thaliana===

		+	{{ABSTRACT_PUBMED_017261584}}

	==About this Structure==		==About this Structure==
-	~~2OQQ~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OQQ OCA].	+	[[2oqq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OQQ OCA].
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
	[[Category: Choi, B S.]]		[[Category: Choi, B S.]]
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	[[Category: Yoon, M K.]]		[[Category: Yoon, M K.]]
	[[Category: Homodimer leucine zipper]]		[[Category: Homodimer leucine zipper]]
-		+	[[Category: Transcription]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Mon Feb 16 19:10:50 2009''~~	+