2p8j - Revision history

OCA at 06:48, 25 January 2023

2023-01-25T06:48:18Z

←Older revision		Revision as of 06:48, 25 January 2023
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	<StructureSection load='2p8j' size='340' side='right'caption='[[2p8j]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2p8j' size='340' side='right'caption='[[2p8j]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2p8j]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"clostridium_acetobutyricum"_prevot_1940 "clostridium acetobutyricum" prevot 1940~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P8J FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2p8j]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_acetobutylicum Clostridium acetobutylicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P8J FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>~~	+
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_349143.1, CA_C2531 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1488 "Clostridium acetobutyricum" Prevot 1940])</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p8j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8j OCA], [https://pdbe.org/2p8j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p8j RCSB], [https://www.ebi.ac.uk/pdbsum/2p8j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p8j ProSAT], [https://www.topsan.org/Proteins/JCSG/2p8j TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p8j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8j OCA], [https://pdbe.org/2p8j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p8j RCSB], [https://www.ebi.ac.uk/pdbsum/2p8j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p8j ProSAT], [https://www.topsan.org/Proteins/JCSG/2p8j TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q97G40_CLOAB Q97G40_CLOAB]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Clostridium ~~acetobutyricum prevot 1940~~]]	+	[[Category: Clostridium acetobutylicum]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Structural genomic]]
-	[[Category: Jcsg]]
-	[[Category: Methyltransferase domain]]
-	[[Category: Np_349143 1]]
-	[[Category: PSI, Protein structure initiative]]
-	[[Category: S-adenosylmethionine-dependent methyltransferase]]
-	[[Category: Transferase]]

OCA at 15:18, 17 June 2021

2021-06-17T15:18:37Z

←Older revision		Revision as of 15:18, 17 June 2021
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	==Crystal structure of S-adenosylmethionine-dependent methyltransferase (NP_349143.1) from Clostridium acetobutylicum at 2.00 A resolution==		==Crystal structure of S-adenosylmethionine-dependent methyltransferase (NP_349143.1) from Clostridium acetobutylicum at 2.00 A resolution==
-	<StructureSection load='2p8j' size='340' side='right' caption='[[2p8j]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='2p8j' size='340' side='right'caption='[[2p8j]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2p8j]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"clostridium_acetobutyricum"_prevot_1940 "clostridium acetobutyricum" prevot 1940]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8J OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2P8J FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2p8j]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"clostridium_acetobutyricum"_prevot_1940 "clostridium acetobutyricum" prevot 1940]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P8J FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_349143.1, CA_C2531 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1488 "Clostridium acetobutyricum" Prevot 1940])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_349143.1, CA_C2531 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1488 "Clostridium acetobutyricum" Prevot 1940])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2p8j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8j OCA], [~~http~~://pdbe.org/2p8j PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2p8j RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2p8j PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2p8j ProSAT], [~~http~~://www.topsan.org/Proteins/JCSG/2p8j TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p8j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8j OCA], [https://pdbe.org/2p8j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p8j RCSB], [https://www.ebi.ac.uk/pdbsum/2p8j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p8j ProSAT], [https://www.topsan.org/Proteins/JCSG/2p8j TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p8/2p8j_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p8/2p8j_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Clostridium acetobutyricum prevot 1940]]		[[Category: Clostridium acetobutyricum prevot 1940]]
		+	[[Category: Large Structures]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Jcsg]]		[[Category: Jcsg]]

OCA at 09:20, 18 October 2017

2017-10-18T09:20:07Z

←Older revision		Revision as of 09:20, 18 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of S-adenosylmethionine-dependent methyltransferase (NP_349143.1) from Clostridium acetobutylicum at 2.00 A resolution==		==Crystal structure of S-adenosylmethionine-dependent methyltransferase (NP_349143.1) from Clostridium acetobutylicum at 2.00 A resolution==
	<StructureSection load='2p8j' size='340' side='right' caption='[[2p8j]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2p8j' size='340' side='right' caption='[[2p8j]], [[Resolution\|resolution]] 2.00Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_349143.1, CA_C2531 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1488 "Clostridium acetobutyricum" Prevot 1940])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_349143.1, CA_C2531 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1488 "Clostridium acetobutyricum" Prevot 1940])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p8j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8j OCA], [http://pdbe.org/2p8j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2p8j RCSB], [http://www.ebi.ac.uk/pdbsum/2p8j PDBsum], [http://www.topsan.org/Proteins/JCSG/2p8j TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p8j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8j OCA], [http://pdbe.org/2p8j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2p8j RCSB], [http://www.ebi.ac.uk/pdbsum/2p8j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2p8j ProSAT], [http://www.topsan.org/Proteins/JCSG/2p8j TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p8j ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 14:38, 11 September 2015

2015-09-11T14:38:17Z

←Older revision		Revision as of 14:38, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2p8j' size='340' side='right' caption='[[2p8j]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2p8j' size='340' side='right' caption='[[2p8j]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2p8j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Clostridium_acetobutylicum Clostridium acetobutylicum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P8J FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2p8j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"clostridium_acetobutyricum"_prevot_1940 "clostridium acetobutyricum" prevot 1940]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P8J FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_349143.1, CA_C2531 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1488 Clostridium ~~acetobutylicum~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_349143.1, CA_C2531 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1488 "Clostridium acetobutyricum" Prevot 1940])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p8j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p8j RCSB], [http://www.ebi.ac.uk/pdbsum/2p8j PDBsum], [http://www.topsan.org/Proteins/JCSG/2p8j TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p8j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8j OCA], [http://pdbe.org/2p8j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2p8j RCSB], [http://www.ebi.ac.uk/pdbsum/2p8j PDBsum], [http://www.topsan.org/Proteins/JCSG/2p8j TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Clostridium ~~acetobutylicum~~]]	+	[[Category: Clostridium acetobutyricum prevot 1940]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Jcsg]]		[[Category: Jcsg]]

OCA at 15:38, 19 January 2015

2015-01-19T15:38:26Z

←Older revision		Revision as of 15:38, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2p8j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum Clostridium acetobutylicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P8J FirstGlance]. <br>		<table><tr><td colspan='2'>[[2p8j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum Clostridium acetobutylicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P8J FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_349143.1, CA_C2531 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1488 Clostridium acetobutylicum])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_349143.1, CA_C2531 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1488 Clostridium acetobutylicum])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p8j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p8j RCSB], [http://www.ebi.ac.uk/pdbsum/2p8j PDBsum], [http://www.topsan.org/Proteins/JCSG/2p8j TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p8j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p8j RCSB], [http://www.ebi.ac.uk/pdbsum/2p8j PDBsum], [http://www.topsan.org/Proteins/JCSG/2p8j TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Clostridium acetobutylicum]]		[[Category: Clostridium acetobutylicum]]
-	[[Category: ~~JCSG, Joint Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
-	[[Category: Joint center for structural genomic]]
	[[Category: Methyltransferase domain]]		[[Category: Methyltransferase domain]]
	[[Category: Np_349143 1]]		[[Category: Np_349143 1]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi-2~~]]	+
	[[Category: S-adenosylmethionine-dependent methyltransferase]]		[[Category: S-adenosylmethionine-dependent methyltransferase]]
-	[[Category: Structural genomic]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 18:51, 30 September 2014

2014-09-30T18:51:25Z

←Older revision		Revision as of 18:51, 30 September 2014
Line 1:		Line 1:
-	~~[[Image:2p8j.png\|left\|200px]]~~	+	==Crystal structure of S-adenosylmethionine-dependent methyltransferase (NP_349143.1) from Clostridium acetobutylicum at 2.00 A resolution==
-		+	<StructureSection load='2p8j' size='340' side='right' caption='[[2p8j]], [[Resolution\|resolution]] 2.00Å' scene=''>
-	~~{{STRUCTURE_2p8j\| PDB=2p8j \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2p8j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum Clostridium acetobutylicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P8J FirstGlance]. <br>
-	===Crystal structure of S-adenosylmethionine-dependent methyltransferase (NP_349143.1) from Clostridium acetobutylicum at 2.00 A resolution===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_349143.1, CA_C2531 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1488 Clostridium acetobutylicum])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p8j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p8j RCSB], [http://www.ebi.ac.uk/pdbsum/2p8j PDBsum], [http://www.topsan.org/Proteins/JCSG/2p8j TOPSAN]</span></td></tr>
-	[[2p8j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum Clostridium acetobutylicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8J OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p8/2p8j_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Clostridium acetobutylicum]]		[[Category: Clostridium acetobutylicum]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]

OCA: Protected "2p8j" [edit=sysop:move=sysop]

2013-01-07T13:45:42Z

Protected "2p8j" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:45, 7 January 2013

OCA at 13:45, 7 January 2013

2013-01-07T13:45:39Z

←Older revision		Revision as of 13:45, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2p8j.png\|left\|200px]]		[[Image:2p8j.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2p8j", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2p8j\| PDB=2p8j \| SCENE= }}		{{STRUCTURE_2p8j\| PDB=2p8j \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~2P8J~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum Clostridium acetobutylicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8J OCA].	+	[[2p8j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum Clostridium acetobutylicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8J OCA].
	[[Category: Clostridium acetobutylicum]]		[[Category: Clostridium acetobutylicum]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
Line 25:		Line 18:
	[[Category: S-adenosylmethionine-dependent methyltransferase]]		[[Category: S-adenosylmethionine-dependent methyltransferase]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-		+	[[Category: Transferase]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Sun Nov 16 16:17:02 2008''~~	+

OCA at 14:17, 16 November 2008

2008-11-16T14:17:05Z

←Older revision		Revision as of 14:17, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	2P8J is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum Clostridium acetobutylicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8J OCA].	+	2P8J is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum Clostridium acetobutylicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8J OCA].
	[[Category: Clostridium acetobutylicum]]		[[Category: Clostridium acetobutylicum]]
-	[[Category: Single protein]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
Line 27:		Line 26:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu Jul 10 12~~:56:24 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:17:02 2008''

OCA at 09:56, 10 July 2008

2008-07-10T09:56:25Z

←Older revision		Revision as of 09:56, 10 July 2008
Line 1:		Line 1:
-	[[Image:2p8j.~~gif~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:2p8j.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_2p8j\| PDB=2p8j \| SCENE= }}		{{STRUCTURE_2p8j\| PDB=2p8j \| SCENE= }}

-	~~'''~~Crystal structure of S-adenosylmethionine-dependent methyltransferase (NP_349143.1) from Clostridium acetobutylicum at 2.00 A resolution~~'''~~	+	===Crystal structure of S-adenosylmethionine-dependent methyltransferase (NP_349143.1) from Clostridium acetobutylicum at 2.00 A resolution===


Line 25:		Line 26:
	[[Category: S-adenosylmethionine-dependent methyltransferase]]		[[Category: S-adenosylmethionine-dependent methyltransferase]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun May 4~~ 12:36:15 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jul 10 12:56:24 2008''