2pe7 - Revision history

OCA at 10:59, 30 August 2023

2023-08-30T10:59:43Z

←Older revision		Revision as of 10:59, 30 August 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2pe7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PE7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PE7 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2pe7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PE7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PE7 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EU:EUROPIUM+ION'>EU</scene>, <scene name='pdbligand=PDC:PYRIDINE-2,6-DICARBOXYLIC+ACID'>PDC</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.46Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EU:EUROPIUM+ION'>EU</scene>, <scene name='pdbligand=PDC:PYRIDINE-2,6-DICARBOXYLIC+ACID'>PDC</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pe7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pe7 OCA], [https://pdbe.org/2pe7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pe7 RCSB], [https://www.ebi.ac.uk/pdbsum/2pe7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pe7 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pe7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pe7 OCA], [https://pdbe.org/2pe7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pe7 RCSB], [https://www.ebi.ac.uk/pdbsum/2pe7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pe7 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/THM1_THADA THM1_THADA] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Thaumatococcus daniellii]]		[[Category: Thaumatococcus daniellii]]
-	[[Category: Kahn, R]]	+	[[Category: Kahn R]]
-	[[Category: Pompidor, G]]	+	[[Category: Pompidor G]]
-	[[Category: Vicat, J]]	+	[[Category: Vicat J]]
-	~~[[Category: Plant protein]]~~	+
-	~~[[Category: Thaumatin]]~~	+
-	~~[[Category: Tris-dipicolinate europium~~]]	+

OCA at 07:45, 9 March 2022

2022-03-09T07:45:05Z

←Older revision		Revision as of 07:45, 9 March 2022
Line 3:		Line 3:
	<StructureSection load='2pe7' size='340' side='right'caption='[[2pe7]], [[Resolution\|resolution]] 1.46Å' scene=''>		<StructureSection load='2pe7' size='340' side='right'caption='[[2pe7]], [[Resolution\|resolution]] 1.46Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2pe7]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PE7 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2PE7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2pe7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PE7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PE7 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EU:EUROPIUM+ION'>EU</scene>, <scene name='pdbligand=PDC:PYRIDINE-2,6-DICARBOXYLIC+ACID'>PDC</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EU:EUROPIUM+ION'>EU</scene>, <scene name='pdbligand=PDC:PYRIDINE-2,6-DICARBOXYLIC+ACID'>PDC</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2pe7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pe7 OCA], [~~http~~://pdbe.org/2pe7 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2pe7 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2pe7 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2pe7 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pe7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pe7 OCA], [https://pdbe.org/2pe7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pe7 RCSB], [https://www.ebi.ac.uk/pdbsum/2pe7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pe7 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 06:54, 3 June 2020

2020-06-03T06:54:33Z

←Older revision		Revision as of 06:54, 3 June 2020
Line 1:		Line 1:

	==Thaumatin from Thaumatococcus Danielli in complex with tris-dipicolinate Europium==		==Thaumatin from Thaumatococcus Danielli in complex with tris-dipicolinate Europium==
-	<StructureSection load='2pe7' size='340' side='right' caption='[[2pe7]], [[Resolution\|resolution]] 1.46Å' scene=''>	+	<StructureSection load='2pe7' size='340' side='right'caption='[[2pe7]], [[Resolution\|resolution]] 1.46Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2pe7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PE7 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2PE7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2pe7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PE7 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2PE7 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EU:EUROPIUM+ION'>EU</scene>, <scene name='pdbligand=PDC:PYRIDINE-2,6-DICARBOXYLIC+ACID'>PDC</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EU:EUROPIUM+ION'>EU</scene>, <scene name='pdbligand=PDC:PYRIDINE-2,6-DICARBOXYLIC+ACID'>PDC</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2pe7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pe7 OCA], [http://pdbe.org/2pe7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2pe7 RCSB], [http://www.ebi.ac.uk/pdbsum/2pe7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2pe7 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2pe7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pe7 OCA], [http://pdbe.org/2pe7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2pe7 RCSB], [http://www.ebi.ac.uk/pdbsum/2pe7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2pe7 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 30:		Line 30:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Thaumatococcus daniellii]]		[[Category: Thaumatococcus daniellii]]
	[[Category: Kahn, R]]		[[Category: Kahn, R]]

OCA at 08:32, 29 August 2018

2018-08-29T08:32:12Z

←Older revision		Revision as of 08:32, 29 August 2018
Line 1:		Line 1:
		+
	==Thaumatin from Thaumatococcus Danielli in complex with tris-dipicolinate Europium==		==Thaumatin from Thaumatococcus Danielli in complex with tris-dipicolinate Europium==
	<StructureSection load='2pe7' size='340' side='right' caption='[[2pe7]], [[Resolution\|resolution]] 1.46Å' scene=''>		<StructureSection load='2pe7' size='340' side='right' caption='[[2pe7]], [[Resolution\|resolution]] 1.46Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2pe7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PE7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PE7 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2pe7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PE7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PE7 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EU:EUROPIUM+ION'>EU</scene>, <scene name='pdbligand=PDC:PYRIDINE-2,6-DICARBOXYLIC+ACID'>PDC</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EU:EUROPIUM+ION'>EU</scene>, <scene name='pdbligand=PDC:PYRIDINE-2,6-DICARBOXYLIC+ACID'>PDC</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pe7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pe7 OCA], [http://pdbe.org/2pe7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2pe7 RCSB], [http://www.ebi.ac.uk/pdbsum/2pe7 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pe7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pe7 OCA], [http://pdbe.org/2pe7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2pe7 RCSB], [http://www.ebi.ac.uk/pdbsum/2pe7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2pe7 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pe/2pe7_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pe/2pe7_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 06:16, 10 February 2016

2016-02-10T06:16:56Z

←Older revision		Revision as of 06:16, 10 February 2016
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pe7 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 06:11, 11 September 2015

2015-09-11T06:11:40Z

←Older revision		Revision as of 06:11, 11 September 2015
Line 4:		Line 4:
	<table><tr><td colspan='2'>[[2pe7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PE7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PE7 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2pe7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PE7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PE7 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EU:EUROPIUM+ION'>EU</scene>, <scene name='pdbligand=PDC:PYRIDINE-2,6-DICARBOXYLIC+ACID'>PDC</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EU:EUROPIUM+ION'>EU</scene>, <scene name='pdbligand=PDC:PYRIDINE-2,6-DICARBOXYLIC+ACID'>PDC</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pe7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pe7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2pe7 RCSB], [http://www.ebi.ac.uk/pdbsum/2pe7 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pe7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pe7 OCA], [http://pdbe.org/2pe7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2pe7 RCSB], [http://www.ebi.ac.uk/pdbsum/2pe7 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2pe7" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 21:34, 3 January 2015

2015-01-03T21:34:06Z

←Older revision		Revision as of 21:34, 3 January 2015
Line 2:		Line 2:
	<StructureSection load='2pe7' size='340' side='right' caption='[[2pe7]], [[Resolution\|resolution]] 1.46Å' scene=''>		<StructureSection load='2pe7' size='340' side='right' caption='[[2pe7]], [[Resolution\|resolution]] 1.46Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2pe7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PE7 OCA]. <br>	+	<table><tr><td colspan='2'>[[2pe7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PE7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PE7 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EU:EUROPIUM+ION'>EU</scene>, <scene name='pdbligand=PDC:PYRIDINE-2,6-DICARBOXYLIC+ACID'>PDC</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene~~><br>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EU:EUROPIUM+ION'>EU</scene>, <scene name='pdbligand=PDC:PYRIDINE-2,6-DICARBOXYLIC+ACID'>PDC</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pe7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pe7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2pe7 RCSB], [http://www.ebi.ac.uk/pdbsum/2pe7 PDBsum]</span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pe7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pe7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2pe7 RCSB], [http://www.ebi.ac.uk/pdbsum/2pe7 PDBsum]</span></td></tr>	+	</table>
-	<table>	+
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 22:
	A dipicolinate lanthanide complex for solving protein structures using anomalous diffraction.,Pompidor G, Maury O, Vicat J, Kahn R Acta Crystallogr D Biol Crystallogr. 2010 Jul;66(Pt 7):762-9. Epub 2010, Jun 19. PMID:20606256<ref>PMID:20606256</ref>		A dipicolinate lanthanide complex for solving protein structures using anomalous diffraction.,Pompidor G, Maury O, Vicat J, Kahn R Acta Crystallogr D Biol Crystallogr. 2010 Jul;66(Pt 7):762-9. Epub 2010, Jun 19. PMID:20606256<ref>PMID:20606256</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==
Line 30:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Thaumatococcus daniellii]]		[[Category: Thaumatococcus daniellii]]
-	[[Category: Kahn, R.]]	+	[[Category: Kahn, R]]
-	[[Category: Pompidor, G.]]	+	[[Category: Pompidor, G]]
-	[[Category: Vicat, J.]]	+	[[Category: Vicat, J]]
	[[Category: Plant protein]]		[[Category: Plant protein]]
	[[Category: Thaumatin]]		[[Category: Thaumatin]]
	[[Category: Tris-dipicolinate europium]]		[[Category: Tris-dipicolinate europium]]

OCA at 08:41, 7 May 2014

2014-05-07T08:41:55Z

←Older revision		Revision as of 08:41, 7 May 2014
Line 1:		Line 1:
-	[[~~Image~~:2pe7.~~png\|left~~\|200px]]	+	==Thaumatin from Thaumatococcus Danielli in complex with tris-dipicolinate Europium==
		+	<StructureSection load='2pe7' size='340' side='right' caption='[[2pe7]], [[Resolution\|resolution]] 1.46Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2pe7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PE7 OCA]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EU:EUROPIUM+ION'>EU</scene>, <scene name='pdbligand=PDC:PYRIDINE-2,6-DICARBOXYLIC+ACID'>PDC</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene><br>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pe7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pe7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2pe7 RCSB], [http://www.ebi.ac.uk/pdbsum/2pe7 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pe/2pe7_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Tris-dipicolinate lanthanide complexes were used to prepare derivative crystals of six proteins: hen egg-white lysozyme, turkey egg-white lysozyme, thaumatin from Thaumatococcus daniellii, urate oxidase from Aspergillus flavus, porcine pancreatic elastase and xylanase from Trichoderma reesei. Diffraction data were collected using either synchrotron radiation or X-rays from a laboratory source. In all cases, the complex turned out to be bound to the protein and the phases determined using the anomalous scattering of the lanthanide led to high-quality electron-density maps. The binding mode of the complex was characterized from the refined structures. The lanthanide tris-dipicolinate was found to bind through interactions between carboxylate groups of the dipicolinate ligands and hydrogen-bond donor groups of the protein. In each binding site, one enantiomeric form of the complex is selected from the racemic solution according to the specific site topology. For hen egg-white lysozyme and xylanase, derivative crystals obtained by cocrystallization belonged to a new monoclinic C2 crystal form that diffracted to high resolution.

-	~~<!--~~	+	A dipicolinate lanthanide complex for solving protein structures using anomalous diffraction.,Pompidor G, Maury O, Vicat J, Kahn R Acta Crystallogr D Biol Crystallogr. 2010 Jul;66(Pt 7):762-9. Epub 2010, Jun 19. PMID:20606256<ref>PMID:20606256</ref>
-	~~The line below this paragraph~~, ~~containing "STRUCTURE_2pe7"~~, ~~creates the "Structure Box" on the page~~.	+
-	~~You may change the PDB parameter~~ (~~which sets the PDB file loaded into the applet)~~	+
-	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded~~),	+
-	~~or leave the SCENE parameter empty for the default display~~.	+
-	-->	+
-	~~{{STRUCTURE_2pe7\| PDB=2pe7 \| SCENE= }}~~	+

-	~~===Thaumatin from Thaumatococcus Danielli in complex with tris-dipicolinate Europium===~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-		+	== References ==
-	~~<!--~~	+	<references/>
-	~~The line below this paragraph~~, ~~{{ABSTRACT_PUBMED_20606256}}, adds~~ the ~~Publication Abstract to the page~~	+	__TOC__
-	~~(as it appears on PubMed at http://www~~.~~pubmed~~.~~gov), where 20606256 is the PubMed ID number~~.	+	</StructureSection>
-	-->	+
-	~~{{ABSTRACT_PUBMED_20606256}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2pe7]] is a 1 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PE7 OCA].~~	+
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:020606256<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Thaumatococcus daniellii]]		[[Category: Thaumatococcus daniellii]]
	[[Category: Kahn, R.]]		[[Category: Kahn, R.]]

OCA: Protected "2pe7" [edit=sysop:move=sysop]

2012-03-21T06:42:37Z

Protected "2pe7" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:42, 21 March 2012

OCA at 06:42, 21 March 2012

2012-03-21T06:42:36Z

←Older revision		Revision as of 06:42, 21 March 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2pe7.png\|left\|200px]]		[[Image:2pe7.png\|left\|200px]]

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	===Thaumatin from Thaumatococcus Danielli in complex with tris-dipicolinate Europium===		===Thaumatin from Thaumatococcus Danielli in complex with tris-dipicolinate Europium===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_20606256}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 20606256 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_20606256}}

	==About this Structure==		==About this Structure==
-	~~2PE7~~ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PE7 OCA].	+	[[2pe7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PE7 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:020606256</ref><references group="xtra"/>
	[[Category: Thaumatococcus daniellii]]		[[Category: Thaumatococcus daniellii]]
	[[Category: Kahn, R.]]		[[Category: Kahn, R.]]
Line 22:		Line 30:
	[[Category: Thaumatin]]		[[Category: Thaumatin]]
	[[Category: Tris-dipicolinate europium]]		[[Category: Tris-dipicolinate europium]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 30 13:18:07 2010''