2rph - Revision history

OCA at 10:02, 14 June 2023

2023-06-14T10:02:41Z

←Older revision		Revision as of 10:02, 14 June 2023
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	==RecT-bound ssDNA==		==RecT-bound ssDNA==
-	<StructureSection load='2rph' size='340' side='right'caption='[[2rph~~]], [[NMR_Ensembles_of_Models \| 10 NMR models~~]]' scene=''>	+	<StructureSection load='2rph' size='340' side='right'caption='[[2rph]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2rph]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RPH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RPH FirstGlance]. <br>		<table><tr><td colspan='2'>[[2rph]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RPH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RPH FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2rpd\|2rpd]], [[2rpe\|2rpe]], [[2rpf\|2rpf]]</div></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rph FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rph OCA], [https://pdbe.org/2rph PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rph RCSB], [https://www.ebi.ac.uk/pdbsum/2rph PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rph ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rph FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rph OCA], [https://pdbe.org/2rph PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rph RCSB], [https://www.ebi.ac.uk/pdbsum/2rph PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rph ProSAT]</span></td></tr>	+
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Ito, Y]]	+	[[Category: Ito Y]]
-	[[Category: Masuda, T]]	+	[[Category: Masuda T]]
-	[[Category: Mikawa, T]]	+	[[Category: Mikawa T]]
-	[[Category: Shibata, T]]	+	[[Category: Shibata T]]
-	~~[[Category: Dna]]~~	+
-	~~[[Category: Reca]]~~	+
-	~~[[Category: Rect]]~~	+
-	~~[[Category: Ssdna~~]]	+

OCA at 07:12, 1 December 2021

2021-12-01T07:12:26Z

←Older revision		Revision as of 07:12, 1 December 2021
Line 3:		Line 3:
	<StructureSection load='2rph' size='340' side='right'caption='[[2rph]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>		<StructureSection load='2rph' size='340' side='right'caption='[[2rph]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2rph]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RPH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2RPH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2rph]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RPH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RPH FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2rpd\|2rpd]], [[2rpe\|2rpe]], [[2rpf\|2rpf]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2rpd\|2rpd]], [[2rpe\|2rpe]], [[2rpf\|2rpf]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2rph FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rph OCA], [~~http~~://pdbe.org/2rph PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2rph RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2rph PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2rph ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rph FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rph OCA], [https://pdbe.org/2rph PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rph RCSB], [https://www.ebi.ac.uk/pdbsum/2rph PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rph ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:47, 26 February 2020

2020-02-26T09:47:57Z

←Older revision		Revision as of 09:47, 26 February 2020
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	==RecT-bound ssDNA==		==RecT-bound ssDNA==
-	<StructureSection load='2rph' size='340' side='right' caption='[[2rph]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>	+	<StructureSection load='2rph' size='340' side='right'caption='[[2rph]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2rph]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RPH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RPH FirstGlance]. <br>		<table><tr><td colspan='2'>[[2rph]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RPH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RPH FirstGlance]. <br>
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Ito, Y]]		[[Category: Ito, Y]]
	[[Category: Masuda, T]]		[[Category: Masuda, T]]

OCA at 18:58, 11 August 2016

2016-08-11T18:58:35Z

←Older revision		Revision as of 18:58, 11 August 2016
Line 1:		Line 1:
		+
	==RecT-bound ssDNA==		==RecT-bound ssDNA==
	<StructureSection load='2rph' size='340' side='right' caption='[[2rph]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>		<StructureSection load='2rph' size='340' side='right' caption='[[2rph]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2rph]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RPH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RPH FirstGlance]. <br>		<table><tr><td colspan='2'>[[2rph]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RPH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RPH FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2rpd\|2rpd]], [[2rpe\|2rpe]], [[2rpf\|2rpf]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2rpd\|2rpd]], [[2rpe\|2rpe]], [[2rpf\|2rpf]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rph FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rph OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2rph RCSB], [http://www.ebi.ac.uk/pdbsum/2rph PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rph FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rph OCA], [http://pdbe.org/2rph PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2rph RCSB], [http://www.ebi.ac.uk/pdbsum/2rph PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2rph ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2rph" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 06:46, 22 January 2015

2015-01-22T06:46:45Z

←Older revision		Revision as of 06:46, 22 January 2015
Line 18:		Line 18:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Ito, Y.]]	+	[[Category: Ito, Y]]
-	[[Category: Masuda, T.]]	+	[[Category: Masuda, T]]
-	[[Category: Mikawa, T.]]	+	[[Category: Mikawa, T]]
-	[[Category: Shibata, T.]]	+	[[Category: Shibata, T]]
	[[Category: Dna]]		[[Category: Dna]]
	[[Category: Reca]]		[[Category: Reca]]
	[[Category: Rect]]		[[Category: Rect]]
	[[Category: Ssdna]]		[[Category: Ssdna]]

OCA at 11:32, 20 October 2014

2014-10-20T11:32:06Z

←Older revision		Revision as of 11:32, 20 October 2014
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-	[[~~Image:~~2rph.~~png~~\|~~left~~\|~~200px~~]]	+	==RecT-bound ssDNA==
		+	<StructureSection load='2rph' size='340' side='right' caption='[[2rph]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2rph]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RPH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RPH FirstGlance]. <br>
		+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2rpd\|2rpd]], [[2rpe\|2rpe]], [[2rpf\|2rpf]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rph FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rph OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2rph RCSB], [http://www.ebi.ac.uk/pdbsum/2rph PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Homologous recombination, which is critical to genetic diversity, depends on homologous pairing (HP). HP is the switch from parental to recombinant base pairs, which requires expansion of inter-base pair spaces. This expansion unavoidably causes untwisting of the parental double-stranded DNA. RecA/Rad51-catalyzed ATP-dependent HP is extensively stimulated in vitro by negative supercoils, which compensates for untwisting. However, in vivo, double-stranded DNA is relaxed by bound proteins and thus is an unfavorable substrate for RecA/Rad51. In contrast, Mhr1, an ATP-independent HP protein required for yeast mitochondrial homologous recombination, catalyzes HP without the net untwisting of double-stranded DNA. Therefore, we questioned whether Mhr1 uses a novel strategy to promote HP. Here, we found that, like RecA, Mhr1 induced the extension of bound single-stranded DNA. In addition, this structure was induced by all evolutionarily and structurally distinct HP proteins so far tested, including bacterial RecO, viral RecT, and human Rad51. Thus, HP includes the common non-canonical DNA structure and uses a common core mechanism, independent of the species of HP proteins. We discuss the significance of multiple types of HP proteins.

-	~~{{STRUCTURE_2rph\| PDB=2rph \| SCENE= }}~~	+	A non-canonical DNA structure enables homologous recombination in various genetic systems.,Masuda T, Ito Y, Terada T, Shibata T, Mikawa T J Biol Chem. 2009 Oct 30;284(44):30230-9. Epub 2009 Sep 3. PMID:19729448<ref>PMID:19729448</ref>

-	~~===RecT-bound ssDNA===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19729448}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2rph]] is~~ a ~~1 chain structure~~. ~~Full experimental information is available from [http://oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=2RPH OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:019729448<~~/~~ref~~><~~ref group="xtra">PMID:018499674</ref><references group="xtra"~~/>	+
	[[Category: Ito, Y.]]		[[Category: Ito, Y.]]
	[[Category: Masuda, T.]]		[[Category: Masuda, T.]]

OCA: Protected "2rph" [edit=sysop:move=sysop]

2013-01-07T21:26:56Z

Protected "2rph" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:26, 7 January 2013

OCA at 21:26, 7 January 2013

2013-01-07T21:26:53Z

←Older revision		Revision as of 21:26, 7 January 2013
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-	{{Seed}}
	[[Image:2rph.png\|left\|200px]]		[[Image:2rph.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2rph", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2rph\| PDB=2rph \| SCENE= }}		{{STRUCTURE_2rph\| PDB=2rph \| SCENE= }}

	===RecT-bound ssDNA===		===RecT-bound ssDNA===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19729448}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19729448 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19729448}}		{{ABSTRACT_PUBMED_19729448}}

	==About this Structure==		==About this Structure==
-	~~2RPH~~ is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RPH OCA].	+	[[2rph]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RPH OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19729448~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019729448</ref><ref group="xtra">PMID:018499674</ref><references group="xtra"/>
	[[Category: Ito, Y.]]		[[Category: Ito, Y.]]
	[[Category: Masuda, T.]]		[[Category: Masuda, T.]]
	[[Category: Mikawa, T.]]		[[Category: Mikawa, T.]]
	[[Category: Shibata, T.]]		[[Category: Shibata, T.]]
		+	[[Category: Dna]]
	[[Category: Reca]]		[[Category: Reca]]
	[[Category: Rect]]		[[Category: Rect]]
	[[Category: Ssdna]]		[[Category: Ssdna]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 6 08:58:16 2010''

OCA at 06:58, 6 January 2010

2010-01-06T06:58:17Z

←Older revision		Revision as of 06:58, 6 January 2010
Line 1:		Line 1:
	{{Seed}}		{{Seed}}
-	[[Image:2rph.~~jpg~~\|left\|200px]]	+	[[Image:2rph.png\|left\|200px]]

	<!--		<!--
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	===RecT-bound ssDNA===		===RecT-bound ssDNA===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_19729448}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 19729448 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_19729448}}

	==About this Structure==		==About this Structure==
	2RPH is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RPH OCA].		2RPH is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RPH OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:19729448</ref><references group="xtra"/>
	[[Category: Ito, Y.]]		[[Category: Ito, Y.]]
	[[Category: Masuda, T.]]		[[Category: Masuda, T.]]
	[[Category: Mikawa, T.]]		[[Category: Mikawa, T.]]
	[[Category: Shibata, T.]]		[[Category: Shibata, T.]]
		+	[[Category: Reca]]
		+	[[Category: Rect]]
	[[Category: Ssdna]]		[[Category: Ssdna]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu May 28 07~~:43:~~53 2009~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 6 08:58:16 2010''

OCA at 04:43, 28 May 2009

2009-05-28T04:43:53Z

←Older revision		Revision as of 04:43, 28 May 2009
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	2RPH is a 1 chain structure. Full ~~crystallographic~~ information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RPH OCA].	+	2RPH is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RPH OCA].
	[[Category: Ito, Y.]]		[[Category: Ito, Y.]]
	[[Category: Masuda, T.]]		[[Category: Masuda, T.]]
Line 21:		Line 21:
	[[Category: Ssdna]]		[[Category: Ssdna]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed~~ May ~~27 15~~:13:25 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu May 28 07:43:53 2009''