2uxk - Revision history

OCA at 14:57, 13 December 2023

2023-12-13T14:57:06Z

←Older revision		Revision as of 14:57, 13 December 2023
Line 3:		Line 3:
	<StructureSection load='2uxk' size='340' side='right'caption='[[2uxk]], [[Resolution\|resolution]] 2.31Å' scene=''>		<StructureSection load='2uxk' size='340' side='right'caption='[[2uxk]], [[Resolution\|resolution]] 2.31Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2uxk]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Rhodobacter_sphaeroides Rhodobacter~~ sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UXK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2UXK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2uxk]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides Cereibacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UXK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2UXK FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCL:BACTERIOCHLOROPHYLL+A'>BCL</scene>, <scene name='pdbligand=BPH:BACTERIOPHEOPHYTIN+A'>BPH</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HTO:HEPTANE-1,2,3-TRIOL'>HTO</scene>, <scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SPO:SPHEROIDENE'>SPO</scene>, <scene name='pdbligand=U10:UBIQUINONE-10'>U10</scene>, <scene name='pdbligand=UQ2:UBIQUINONE-2'>UQ2</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.31Å</td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1aig\|1aig]], [[1aij\|1aij]], [[1ds8\|1ds8]], [[1dv3\|1dv3]], [[1dv6\|1dv6]], [[1e14\|1e14]], [[1e6d\|1e6d]], [[1f6n\|1f6n]], [[1fnp\|1fnp]], [[1fnq\|1fnq]], [[1jgw\|1jgw]], [[1jgx\|1jgx]], [[1jgy\|1jgy]], [[1jgz\|1jgz]], [[1jh0\|1jh0]], [[1k6l\|1k6l]], [[1k6n\|1k6n]], [[1kby\|1kby]], [[1l9b\|1l9b]], [[1l9j\|1l9j]], [[1m3x\|1m3x]], [[1mps\|1mps]], [[1ogv\|1ogv]], [[1pcr\|1pcr]], [[1pss\|1pss]], [[1pst\|1pst]], [[1qov\|1qov]], [[1rg5\|1rg5]], [[1rgn\|1rgn]], [[1rqk\|1rqk]], [[1rvj\|1rvj]], [[1ry5\|1ry5]], [[1rzh\|1rzh]], [[1rzz\|1rzz]], [[1s00\|1s00]], [[1umx\|1umx]], [[1yst\|1yst]], [[1z9j\|1z9j]], [[1z9k\|1z9k]], [[2bnp\|2bnp]], [[2bns\|2bns]], [[2boz\|2boz]], [[2gmr\|2gmr]], [[2j8c\|2j8c]], [[2j8d\|2j8d]], [[2rcr\|2rcr]], [[2uws\|2uws]], [[2uwt\|2uwt]], [[2uwu\|2uwu]], [[2uwv\|2uwv]], [[2uww\|2uww]], [[2ux3\|2ux3]], [[2ux4\|2ux4]], [[2ux5\|2ux5]], [[4rcr\|4rcr]], [[2uxj\|2uxj]], [[2uxl\|2uxl]], [[2uxm\|2uxm]]</div></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCL:BACTERIOCHLOROPHYLL+A'>BCL</scene>, <scene name='pdbligand=BPH:BACTERIOPHEOPHYTIN+A'>BPH</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HTO:HEPTANE-1,2,3-TRIOL'>HTO</scene>, <scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SPO:SPHEROIDENE'>SPO</scene>, <scene name='pdbligand=U10:UBIQUINONE-10'>U10</scene>, <scene name='pdbligand=UQ2:UBIQUINONE-2'>UQ2</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2uxk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uxk OCA], [https://pdbe.org/2uxk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2uxk RCSB], [https://www.ebi.ac.uk/pdbsum/2uxk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2uxk ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2uxk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uxk OCA], [https://pdbe.org/2uxk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2uxk RCSB], [https://www.ebi.ac.uk/pdbsum/2uxk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2uxk ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/RCEH_RHOSH RCEH_RHOSH]] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. [[https://www.uniprot.org/uniprot/RCEM_RHOSH RCEM_RHOSH]] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. [[https://www.uniprot.org/uniprot/RCEL_RHOSH RCEL_RHOSH]] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	+	[https://www.uniprot.org/uniprot/RCEM_CERSP RCEM_CERSP] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Cereibacter sphaeroides]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Rhodobacter sphaeroides]]~~	+	[[Category: Diehm R]]
-	[[Category: Diehm, R]]	+	[[Category: Fritzsch G]]
-	[[Category: Fritzsch, G]]	+	[[Category: Koepke J]]
-	[[Category: Koepke, J]]	+
-	~~[[Category: Bacteriochlorophyll]]~~	+
-	~~[[Category: Binding positions of the secondary quinone qb]]~~	+
-	~~[[Category: Cardiolipin]]~~	+
-	~~[[Category: Chlorophyll]]~~	+
-	~~[[Category: Chromophore]]~~	+
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Iron]]~~	+
-	~~[[Category: Magnesium]]~~	+
-	~~[[Category: Membrane]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Photosynthesis]]~~	+
-	~~[[Category: Proton translocation pathway]]~~	+
-	~~[[Category: Reaction center]]~~	+
-	~~[[Category: Transmembrane]]~~	+
-	~~[[Category: Transport~~]]	+

OCA at 10:39, 7 July 2021

2021-07-07T10:39:34Z

←Older revision		Revision as of 10:39, 7 July 2021
Line 3:		Line 3:
	<StructureSection load='2uxk' size='340' side='right'caption='[[2uxk]], [[Resolution\|resolution]] 2.31Å' scene=''>		<StructureSection load='2uxk' size='340' side='right'caption='[[2uxk]], [[Resolution\|resolution]] 2.31Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2uxk]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UXK OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2UXK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2uxk]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UXK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2UXK FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCL:BACTERIOCHLOROPHYLL+A'>BCL</scene>, <scene name='pdbligand=BPH:BACTERIOPHEOPHYTIN+A'>BPH</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HTO:HEPTANE-1,2,3-TRIOL'>HTO</scene>, <scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SPO:SPHEROIDENE'>SPO</scene>, <scene name='pdbligand=U10:UBIQUINONE-10'>U10</scene>, <scene name='pdbligand=UQ2:UBIQUINONE-2'>UQ2</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCL:BACTERIOCHLOROPHYLL+A'>BCL</scene>, <scene name='pdbligand=BPH:BACTERIOPHEOPHYTIN+A'>BPH</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HTO:HEPTANE-1,2,3-TRIOL'>HTO</scene>, <scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SPO:SPHEROIDENE'>SPO</scene>, <scene name='pdbligand=U10:UBIQUINONE-10'>U10</scene>, <scene name='pdbligand=UQ2:UBIQUINONE-2'>UQ2</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1aig\|1aig]], [[1aij\|1aij]], [[1ds8\|1ds8]], [[1dv3\|1dv3]], [[1dv6\|1dv6]], [[1e14\|1e14]], [[1e6d\|1e6d]], [[1f6n\|1f6n]], [[1fnp\|1fnp]], [[1fnq\|1fnq]], [[1jgw\|1jgw]], [[1jgx\|1jgx]], [[1jgy\|1jgy]], [[1jgz\|1jgz]], [[1jh0\|1jh0]], [[1k6l\|1k6l]], [[1k6n\|1k6n]], [[1kby\|1kby]], [[1l9b\|1l9b]], [[1l9j\|1l9j]], [[1m3x\|1m3x]], [[1mps\|1mps]], [[1ogv\|1ogv]], [[1pcr\|1pcr]], [[1pss\|1pss]], [[1pst\|1pst]], [[1qov\|1qov]], [[1rg5\|1rg5]], [[1rgn\|1rgn]], [[1rqk\|1rqk]], [[1rvj\|1rvj]], [[1ry5\|1ry5]], [[1rzh\|1rzh]], [[1rzz\|1rzz]], [[1s00\|1s00]], [[1umx\|1umx]], [[1yst\|1yst]], [[1z9j\|1z9j]], [[1z9k\|1z9k]], [[2bnp\|2bnp]], [[2bns\|2bns]], [[2boz\|2boz]], [[2gmr\|2gmr]], [[2j8c\|2j8c]], [[2j8d\|2j8d]], [[2rcr\|2rcr]], [[2uws\|2uws]], [[2uwt\|2uwt]], [[2uwu\|2uwu]], [[2uwv\|2uwv]], [[2uww\|2uww]], [[2ux3\|2ux3]], [[2ux4\|2ux4]], [[2ux5\|2ux5]], [[4rcr\|4rcr]], [[2uxj\|2uxj]], [[2uxl\|2uxl]], [[2uxm\|2uxm]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1aig\|1aig]], [[1aij\|1aij]], [[1ds8\|1ds8]], [[1dv3\|1dv3]], [[1dv6\|1dv6]], [[1e14\|1e14]], [[1e6d\|1e6d]], [[1f6n\|1f6n]], [[1fnp\|1fnp]], [[1fnq\|1fnq]], [[1jgw\|1jgw]], [[1jgx\|1jgx]], [[1jgy\|1jgy]], [[1jgz\|1jgz]], [[1jh0\|1jh0]], [[1k6l\|1k6l]], [[1k6n\|1k6n]], [[1kby\|1kby]], [[1l9b\|1l9b]], [[1l9j\|1l9j]], [[1m3x\|1m3x]], [[1mps\|1mps]], [[1ogv\|1ogv]], [[1pcr\|1pcr]], [[1pss\|1pss]], [[1pst\|1pst]], [[1qov\|1qov]], [[1rg5\|1rg5]], [[1rgn\|1rgn]], [[1rqk\|1rqk]], [[1rvj\|1rvj]], [[1ry5\|1ry5]], [[1rzh\|1rzh]], [[1rzz\|1rzz]], [[1s00\|1s00]], [[1umx\|1umx]], [[1yst\|1yst]], [[1z9j\|1z9j]], [[1z9k\|1z9k]], [[2bnp\|2bnp]], [[2bns\|2bns]], [[2boz\|2boz]], [[2gmr\|2gmr]], [[2j8c\|2j8c]], [[2j8d\|2j8d]], [[2rcr\|2rcr]], [[2uws\|2uws]], [[2uwt\|2uwt]], [[2uwu\|2uwu]], [[2uwv\|2uwv]], [[2uww\|2uww]], [[2ux3\|2ux3]], [[2ux4\|2ux4]], [[2ux5\|2ux5]], [[4rcr\|4rcr]], [[2uxj\|2uxj]], [[2uxl\|2uxl]], [[2uxm\|2uxm]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2uxk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uxk OCA], [~~http~~://pdbe.org/2uxk PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2uxk RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2uxk PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2uxk ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2uxk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uxk OCA], [https://pdbe.org/2uxk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2uxk RCSB], [https://www.ebi.ac.uk/pdbsum/2uxk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2uxk ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/RCEH_RHOSH RCEH_RHOSH]] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. [[~~http~~://www.uniprot.org/uniprot/RCEM_RHOSH RCEM_RHOSH]] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. [[~~http~~://www.uniprot.org/uniprot/RCEL_RHOSH RCEL_RHOSH]] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	+	[[https://www.uniprot.org/uniprot/RCEH_RHOSH RCEH_RHOSH]] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. [[https://www.uniprot.org/uniprot/RCEM_RHOSH RCEM_RHOSH]] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. [[https://www.uniprot.org/uniprot/RCEL_RHOSH RCEL_RHOSH]] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 07:36, 24 July 2019

2019-07-24T07:36:35Z

←Older revision		Revision as of 07:36, 24 July 2019
Line 1:		Line 1:

	==X-ray high resolution structure of the photosynthetic reaction center from Rb. sphaeroides at pH 10 in the charge-separated state==		==X-ray high resolution structure of the photosynthetic reaction center from Rb. sphaeroides at pH 10 in the charge-separated state==
-	<StructureSection load='2uxk' size='340' side='right' caption='[[2uxk]], [[Resolution\|resolution]] 2.31Å' scene=''>	+	<StructureSection load='2uxk' size='340' side='right'caption='[[2uxk]], [[Resolution\|resolution]] 2.31Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2uxk]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UXK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UXK FirstGlance]. <br>		<table><tr><td colspan='2'>[[2uxk]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UXK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UXK FirstGlance]. <br>
Line 33:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Rhodobacter sphaeroides]]		[[Category: Rhodobacter sphaeroides]]
	[[Category: Diehm, R]]		[[Category: Diehm, R]]

OCA at 08:17, 12 September 2018

2018-09-12T08:17:10Z

←Older revision		Revision as of 08:17, 12 September 2018
Line 1:		Line 1:
-	==X-~~RAY HIGH RESOLUTION STRUCTURE OF THE PHOTOSYNTHETIC REACTION CENTER FROM RB~~. ~~SPHAEROIDES AT PH~~ 10 ~~IN THE CHARGE~~-~~SEPARATED STATE~~==	+
		+	==X-ray high resolution structure of the photosynthetic reaction center from Rb. sphaeroides at pH 10 in the charge-separated state==
	<StructureSection load='2uxk' size='340' side='right' caption='[[2uxk]], [[Resolution\|resolution]] 2.31Å' scene=''>		<StructureSection load='2uxk' size='340' side='right' caption='[[2uxk]], [[Resolution\|resolution]] 2.31Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCL:BACTERIOCHLOROPHYLL+A'>BCL</scene>, <scene name='pdbligand=BPH:BACTERIOPHEOPHYTIN+A'>BPH</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HTO:HEPTANE-1,2,3-TRIOL'>HTO</scene>, <scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SPO:SPHEROIDENE'>SPO</scene>, <scene name='pdbligand=U10:UBIQUINONE-10'>U10</scene>, <scene name='pdbligand=UQ2:UBIQUINONE-2'>UQ2</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCL:BACTERIOCHLOROPHYLL+A'>BCL</scene>, <scene name='pdbligand=BPH:BACTERIOPHEOPHYTIN+A'>BPH</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HTO:HEPTANE-1,2,3-TRIOL'>HTO</scene>, <scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SPO:SPHEROIDENE'>SPO</scene>, <scene name='pdbligand=U10:UBIQUINONE-10'>U10</scene>, <scene name='pdbligand=UQ2:UBIQUINONE-2'>UQ2</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1aig\|1aig]], [[1aij\|1aij]], [[1ds8\|1ds8]], [[1dv3\|1dv3]], [[1dv6\|1dv6]], [[1e14\|1e14]], [[1e6d\|1e6d]], [[1f6n\|1f6n]], [[1fnp\|1fnp]], [[1fnq\|1fnq]], [[1jgw\|1jgw]], [[1jgx\|1jgx]], [[1jgy\|1jgy]], [[1jgz\|1jgz]], [[1jh0\|1jh0]], [[1k6l\|1k6l]], [[1k6n\|1k6n]], [[1kby\|1kby]], [[1l9b\|1l9b]], [[1l9j\|1l9j]], [[1m3x\|1m3x]], [[1mps\|1mps]], [[1ogv\|1ogv]], [[1pcr\|1pcr]], [[1pss\|1pss]], [[1pst\|1pst]], [[1qov\|1qov]], [[1rg5\|1rg5]], [[1rgn\|1rgn]], [[1rqk\|1rqk]], [[1rvj\|1rvj]], [[1ry5\|1ry5]], [[1rzh\|1rzh]], [[1rzz\|1rzz]], [[1s00\|1s00]], [[1umx\|1umx]], [[1yst\|1yst]], [[1z9j\|1z9j]], [[1z9k\|1z9k]], [[2bnp\|2bnp]], [[2bns\|2bns]], [[2boz\|2boz]], [[2gmr\|2gmr]], [[2j8c\|2j8c]], [[2j8d\|2j8d]], [[2rcr\|2rcr]], [[2uws\|2uws]], [[2uwt\|2uwt]], [[2uwu\|2uwu]], [[2uwv\|2uwv]], [[2uww\|2uww]], [[2ux3\|2ux3]], [[2ux4\|2ux4]], [[2ux5\|2ux5]], [[4rcr\|4rcr]], [[2uxj\|2uxj]], [[2uxl\|2uxl]], [[2uxm\|2uxm]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1aig\|1aig]], [[1aij\|1aij]], [[1ds8\|1ds8]], [[1dv3\|1dv3]], [[1dv6\|1dv6]], [[1e14\|1e14]], [[1e6d\|1e6d]], [[1f6n\|1f6n]], [[1fnp\|1fnp]], [[1fnq\|1fnq]], [[1jgw\|1jgw]], [[1jgx\|1jgx]], [[1jgy\|1jgy]], [[1jgz\|1jgz]], [[1jh0\|1jh0]], [[1k6l\|1k6l]], [[1k6n\|1k6n]], [[1kby\|1kby]], [[1l9b\|1l9b]], [[1l9j\|1l9j]], [[1m3x\|1m3x]], [[1mps\|1mps]], [[1ogv\|1ogv]], [[1pcr\|1pcr]], [[1pss\|1pss]], [[1pst\|1pst]], [[1qov\|1qov]], [[1rg5\|1rg5]], [[1rgn\|1rgn]], [[1rqk\|1rqk]], [[1rvj\|1rvj]], [[1ry5\|1ry5]], [[1rzh\|1rzh]], [[1rzz\|1rzz]], [[1s00\|1s00]], [[1umx\|1umx]], [[1yst\|1yst]], [[1z9j\|1z9j]], [[1z9k\|1z9k]], [[2bnp\|2bnp]], [[2bns\|2bns]], [[2boz\|2boz]], [[2gmr\|2gmr]], [[2j8c\|2j8c]], [[2j8d\|2j8d]], [[2rcr\|2rcr]], [[2uws\|2uws]], [[2uwt\|2uwt]], [[2uwu\|2uwu]], [[2uwv\|2uwv]], [[2uww\|2uww]], [[2ux3\|2ux3]], [[2ux4\|2ux4]], [[2ux5\|2ux5]], [[4rcr\|4rcr]], [[2uxj\|2uxj]], [[2uxl\|2uxl]], [[2uxm\|2uxm]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uxk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uxk OCA], [http://pdbe.org/2uxk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2uxk RCSB], [http://www.ebi.ac.uk/pdbsum/2uxk PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uxk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uxk OCA], [http://pdbe.org/2uxk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2uxk RCSB], [http://www.ebi.ac.uk/pdbsum/2uxk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2uxk ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ux/2uxk_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ux/2uxk_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 14:25, 8 February 2016

2016-02-08T14:25:22Z

←Older revision		Revision as of 14:25, 8 February 2016
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCL:BACTERIOCHLOROPHYLL+A'>BCL</scene>, <scene name='pdbligand=BPH:BACTERIOPHEOPHYTIN+A'>BPH</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HTO:HEPTANE-1,2,3-TRIOL'>HTO</scene>, <scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SPO:SPHEROIDENE'>SPO</scene>, <scene name='pdbligand=U10:UBIQUINONE-10'>U10</scene>, <scene name='pdbligand=UQ2:UBIQUINONE-2'>UQ2</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCL:BACTERIOCHLOROPHYLL+A'>BCL</scene>, <scene name='pdbligand=BPH:BACTERIOPHEOPHYTIN+A'>BPH</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HTO:HEPTANE-1,2,3-TRIOL'>HTO</scene>, <scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SPO:SPHEROIDENE'>SPO</scene>, <scene name='pdbligand=U10:UBIQUINONE-10'>U10</scene>, <scene name='pdbligand=UQ2:UBIQUINONE-2'>UQ2</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1aig\|1aig]], [[1aij\|1aij]], [[1ds8\|1ds8]], [[1dv3\|1dv3]], [[1dv6\|1dv6]], [[1e14\|1e14]], [[1e6d\|1e6d]], [[1f6n\|1f6n]], [[1fnp\|1fnp]], [[1fnq\|1fnq]], [[1jgw\|1jgw]], [[1jgx\|1jgx]], [[1jgy\|1jgy]], [[1jgz\|1jgz]], [[1jh0\|1jh0]], [[1k6l\|1k6l]], [[1k6n\|1k6n]], [[1kby\|1kby]], [[1l9b\|1l9b]], [[1l9j\|1l9j]], [[1m3x\|1m3x]], [[1mps\|1mps]], [[1ogv\|1ogv]], [[1pcr\|1pcr]], [[1pss\|1pss]], [[1pst\|1pst]], [[1qov\|1qov]], [[1rg5\|1rg5]], [[1rgn\|1rgn]], [[1rqk\|1rqk]], [[1rvj\|1rvj]], [[1ry5\|1ry5]], [[1rzh\|1rzh]], [[1rzz\|1rzz]], [[1s00\|1s00]], [[1umx\|1umx]], [[1yst\|1yst]], [[1z9j\|1z9j]], [[1z9k\|1z9k]], [[2bnp\|2bnp]], [[2bns\|2bns]], [[2boz\|2boz]], [[2gmr\|2gmr]], [[2j8c\|2j8c]], [[2j8d\|2j8d]], [[2rcr\|2rcr]], [[2uws\|2uws]], [[2uwt\|2uwt]], [[2uwu\|2uwu]], [[2uwv\|2uwv]], [[2uww\|2uww]], [[2ux3\|2ux3]], [[2ux4\|2ux4]], [[2ux5\|2ux5]], [[4rcr\|4rcr]], [[2uxj\|2uxj]], [[2uxl\|2uxl]], [[2uxm\|2uxm]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1aig\|1aig]], [[1aij\|1aij]], [[1ds8\|1ds8]], [[1dv3\|1dv3]], [[1dv6\|1dv6]], [[1e14\|1e14]], [[1e6d\|1e6d]], [[1f6n\|1f6n]], [[1fnp\|1fnp]], [[1fnq\|1fnq]], [[1jgw\|1jgw]], [[1jgx\|1jgx]], [[1jgy\|1jgy]], [[1jgz\|1jgz]], [[1jh0\|1jh0]], [[1k6l\|1k6l]], [[1k6n\|1k6n]], [[1kby\|1kby]], [[1l9b\|1l9b]], [[1l9j\|1l9j]], [[1m3x\|1m3x]], [[1mps\|1mps]], [[1ogv\|1ogv]], [[1pcr\|1pcr]], [[1pss\|1pss]], [[1pst\|1pst]], [[1qov\|1qov]], [[1rg5\|1rg5]], [[1rgn\|1rgn]], [[1rqk\|1rqk]], [[1rvj\|1rvj]], [[1ry5\|1ry5]], [[1rzh\|1rzh]], [[1rzz\|1rzz]], [[1s00\|1s00]], [[1umx\|1umx]], [[1yst\|1yst]], [[1z9j\|1z9j]], [[1z9k\|1z9k]], [[2bnp\|2bnp]], [[2bns\|2bns]], [[2boz\|2boz]], [[2gmr\|2gmr]], [[2j8c\|2j8c]], [[2j8d\|2j8d]], [[2rcr\|2rcr]], [[2uws\|2uws]], [[2uwt\|2uwt]], [[2uwu\|2uwu]], [[2uwv\|2uwv]], [[2uww\|2uww]], [[2ux3\|2ux3]], [[2ux4\|2ux4]], [[2ux5\|2ux5]], [[4rcr\|4rcr]], [[2uxj\|2uxj]], [[2uxl\|2uxl]], [[2uxm\|2uxm]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uxk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uxk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2uxk RCSB], [http://www.ebi.ac.uk/pdbsum/2uxk PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uxk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uxk OCA], [http://pdbe.org/2uxk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2uxk RCSB], [http://www.ebi.ac.uk/pdbsum/2uxk PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2uxk ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2uxk" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 23:59, 24 December 2014

2014-12-24T23:59:32Z

←Older revision		Revision as of 23:59, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2uxk]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UXK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UXK FirstGlance]. <br>		<table><tr><td colspan='2'>[[2uxk]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UXK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UXK FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCL:BACTERIOCHLOROPHYLL+A'>BCL</scene>, <scene name='pdbligand=BPH:BACTERIOPHEOPHYTIN+A'>BPH</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HTO:HEPTANE-1,2,3-TRIOL'>HTO</scene>, <scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SPO:SPHEROIDENE'>SPO</scene>, <scene name='pdbligand=U10:UBIQUINONE-10'>U10</scene>, <scene name='pdbligand=UQ2:UBIQUINONE-2'>UQ2</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCL:BACTERIOCHLOROPHYLL+A'>BCL</scene>, <scene name='pdbligand=BPH:BACTERIOPHEOPHYTIN+A'>BPH</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HTO:HEPTANE-1,2,3-TRIOL'>HTO</scene>, <scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SPO:SPHEROIDENE'>SPO</scene>, <scene name='pdbligand=U10:UBIQUINONE-10'>U10</scene>, <scene name='pdbligand=UQ2:UBIQUINONE-2'>UQ2</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1aig\|1aig]], [[1aij\|1aij]], [[1ds8\|1ds8]], [[1dv3\|1dv3]], [[1dv6\|1dv6]], [[1e14\|1e14]], [[1e6d\|1e6d]], [[1f6n\|1f6n]], [[1fnp\|1fnp]], [[1fnq\|1fnq]], [[1jgw\|1jgw]], [[1jgx\|1jgx]], [[1jgy\|1jgy]], [[1jgz\|1jgz]], [[1jh0\|1jh0]], [[1k6l\|1k6l]], [[1k6n\|1k6n]], [[1kby\|1kby]], [[1l9b\|1l9b]], [[1l9j\|1l9j]], [[1m3x\|1m3x]], [[1mps\|1mps]], [[1ogv\|1ogv]], [[1pcr\|1pcr]], [[1pss\|1pss]], [[1pst\|1pst]], [[1qov\|1qov]], [[1rg5\|1rg5]], [[1rgn\|1rgn]], [[1rqk\|1rqk]], [[1rvj\|1rvj]], [[1ry5\|1ry5]], [[1rzh\|1rzh]], [[1rzz\|1rzz]], [[1s00\|1s00]], [[1umx\|1umx]], [[1yst\|1yst]], [[1z9j\|1z9j]], [[1z9k\|1z9k]], [[2bnp\|2bnp]], [[2bns\|2bns]], [[2boz\|2boz]], [[2gmr\|2gmr]], [[2j8c\|2j8c]], [[2j8d\|2j8d]], [[2rcr\|2rcr]], [[2uws\|2uws]], [[2uwt\|2uwt]], [[2uwu\|2uwu]], [[2uwv\|2uwv]], [[2uww\|2uww]], [[2ux3\|2ux3]], [[2ux4\|2ux4]], [[2ux5\|2ux5]], [[4rcr\|4rcr]], [[2uxj\|2uxj]], [[2uxl\|2uxl]], [[2uxm\|2uxm]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1aig\|1aig]], [[1aij\|1aij]], [[1ds8\|1ds8]], [[1dv3\|1dv3]], [[1dv6\|1dv6]], [[1e14\|1e14]], [[1e6d\|1e6d]], [[1f6n\|1f6n]], [[1fnp\|1fnp]], [[1fnq\|1fnq]], [[1jgw\|1jgw]], [[1jgx\|1jgx]], [[1jgy\|1jgy]], [[1jgz\|1jgz]], [[1jh0\|1jh0]], [[1k6l\|1k6l]], [[1k6n\|1k6n]], [[1kby\|1kby]], [[1l9b\|1l9b]], [[1l9j\|1l9j]], [[1m3x\|1m3x]], [[1mps\|1mps]], [[1ogv\|1ogv]], [[1pcr\|1pcr]], [[1pss\|1pss]], [[1pst\|1pst]], [[1qov\|1qov]], [[1rg5\|1rg5]], [[1rgn\|1rgn]], [[1rqk\|1rqk]], [[1rvj\|1rvj]], [[1ry5\|1ry5]], [[1rzh\|1rzh]], [[1rzz\|1rzz]], [[1s00\|1s00]], [[1umx\|1umx]], [[1yst\|1yst]], [[1z9j\|1z9j]], [[1z9k\|1z9k]], [[2bnp\|2bnp]], [[2bns\|2bns]], [[2boz\|2boz]], [[2gmr\|2gmr]], [[2j8c\|2j8c]], [[2j8d\|2j8d]], [[2rcr\|2rcr]], [[2uws\|2uws]], [[2uwt\|2uwt]], [[2uwu\|2uwu]], [[2uwv\|2uwv]], [[2uww\|2uww]], [[2ux3\|2ux3]], [[2ux4\|2ux4]], [[2ux5\|2ux5]], [[4rcr\|4rcr]], [[2uxj\|2uxj]], [[2uxl\|2uxl]], [[2uxm\|2uxm]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uxk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uxk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2uxk RCSB], [http://www.ebi.ac.uk/pdbsum/2uxk PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uxk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uxk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2uxk RCSB], [http://www.ebi.ac.uk/pdbsum/2uxk PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RCEH_RHOSH RCEH_RHOSH]] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. [[http://www.uniprot.org/uniprot/RCEM_RHOSH RCEM_RHOSH]] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. [[http://www.uniprot.org/uniprot/RCEL_RHOSH RCEL_RHOSH]] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Rhodobacter sphaeroides]]		[[Category: Rhodobacter sphaeroides]]
-	[[Category: Diehm, R.]]	+	[[Category: Diehm, R]]
-	[[Category: Fritzsch, G.]]	+	[[Category: Fritzsch, G]]
-	[[Category: Koepke, J.]]	+	[[Category: Koepke, J]]
	[[Category: Bacteriochlorophyll]]		[[Category: Bacteriochlorophyll]]
	[[Category: Binding positions of the secondary quinone qb]]		[[Category: Binding positions of the secondary quinone qb]]

OCA at 01:52, 1 October 2014

2014-10-01T01:52:37Z

←Older revision		Revision as of 01:52, 1 October 2014
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-	[[~~Image:~~2uxk.~~png~~\|~~left~~\|200px]]	+	==X-RAY HIGH RESOLUTION STRUCTURE OF THE PHOTOSYNTHETIC REACTION CENTER FROM RB. SPHAEROIDES AT PH 10 IN THE CHARGE-SEPARATED STATE==
		+	<StructureSection load='2uxk' size='340' side='right' caption='[[2uxk]], [[Resolution\|resolution]] 2.31Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2uxk]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UXK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UXK FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCL:BACTERIOCHLOROPHYLL+A'>BCL</scene>, <scene name='pdbligand=BPH:BACTERIOPHEOPHYTIN+A'>BPH</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HTO:HEPTANE-1,2,3-TRIOL'>HTO</scene>, <scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SPO:SPHEROIDENE'>SPO</scene>, <scene name='pdbligand=U10:UBIQUINONE-10'>U10</scene>, <scene name='pdbligand=UQ2:UBIQUINONE-2'>UQ2</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1aig\|1aig]], [[1aij\|1aij]], [[1ds8\|1ds8]], [[1dv3\|1dv3]], [[1dv6\|1dv6]], [[1e14\|1e14]], [[1e6d\|1e6d]], [[1f6n\|1f6n]], [[1fnp\|1fnp]], [[1fnq\|1fnq]], [[1jgw\|1jgw]], [[1jgx\|1jgx]], [[1jgy\|1jgy]], [[1jgz\|1jgz]], [[1jh0\|1jh0]], [[1k6l\|1k6l]], [[1k6n\|1k6n]], [[1kby\|1kby]], [[1l9b\|1l9b]], [[1l9j\|1l9j]], [[1m3x\|1m3x]], [[1mps\|1mps]], [[1ogv\|1ogv]], [[1pcr\|1pcr]], [[1pss\|1pss]], [[1pst\|1pst]], [[1qov\|1qov]], [[1rg5\|1rg5]], [[1rgn\|1rgn]], [[1rqk\|1rqk]], [[1rvj\|1rvj]], [[1ry5\|1ry5]], [[1rzh\|1rzh]], [[1rzz\|1rzz]], [[1s00\|1s00]], [[1umx\|1umx]], [[1yst\|1yst]], [[1z9j\|1z9j]], [[1z9k\|1z9k]], [[2bnp\|2bnp]], [[2bns\|2bns]], [[2boz\|2boz]], [[2gmr\|2gmr]], [[2j8c\|2j8c]], [[2j8d\|2j8d]], [[2rcr\|2rcr]], [[2uws\|2uws]], [[2uwt\|2uwt]], [[2uwu\|2uwu]], [[2uwv\|2uwv]], [[2uww\|2uww]], [[2ux3\|2ux3]], [[2ux4\|2ux4]], [[2ux5\|2ux5]], [[4rcr\|4rcr]], [[2uxj\|2uxj]], [[2uxl\|2uxl]], [[2uxm\|2uxm]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uxk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uxk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2uxk RCSB], [http://www.ebi.ac.uk/pdbsum/2uxk PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ux/2uxk_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The structure of the photosynthetic reaction-center from Rhodobacter sphaeroides has been determined at four different pH values (6.5, 8.0, 9.0, 10.0) in the neutral and in charge separated states. At pH 8.0, in the neutral state, we obtain a resolution of 1.87 A, which is the best ever reported for the bacterial reaction center protein. Our crystallographic data confirm the existence of two different binding positions of the secondary quinone (QB). We observe a new orientation of QB in its distal position, which shows no ring-flip compared to the orientation in the proximal position. Datasets collected for the different pH values show a pH-dependence of the population of the proximal position. The new orientation of QB in the distal position and the pH-dependence could be confirmed by continuum electrostatics calculations. Our calculations are in agreement with the experimentally observed proton uptake upon charge separation. The high resolution of our crystallographic data allows us to identify new water molecules and external residues being involved in two previously described hydrogen bond proton channels. These extended proton-transfer pathways, ending at either of the two oxo-groups of QB in its proximal position, provide additional evidence that ring-flipping is not required for complete protonation of QB upon reduction.

-	~~{{STRUCTURE_2uxk\| PDB=2uxk \| SCENE= }}~~	+	pH modulates the quinone position in the photosynthetic reaction center from Rhodobacter sphaeroides in the neutral and charge separated states.,Koepke J, Krammer EM, Klingen AR, Sebban P, Ullmann GM, Fritzsch G J Mol Biol. 2007 Aug 10;371(2):396-409. Epub 2007 May 10. PMID:17570397<ref>PMID:17570397</ref>

-	~~===X-RAY HIGH RESOLUTION STRUCTURE OF THE PHOTOSYNTHETIC REACTION CENTER FROM RB. SPHAEROIDES AT PH 10 IN THE CHARGE-SEPARATED STATE===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17570397}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2uxk]] is~~ a ~~3 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2UXK OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:017570397<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Rhodobacter sphaeroides]]		[[Category: Rhodobacter sphaeroides]]
	[[Category: Diehm, R.]]		[[Category: Diehm, R.]]

OCA: Protected "2uxk" [edit=sysop:move=sysop]

2013-01-07T19:59:50Z

Protected "2uxk" [edit=sysop:move=sysop]

←Older revision

Revision as of 19:59, 7 January 2013

OCA at 19:59, 7 January 2013

2013-01-07T19:59:48Z

←Older revision		Revision as of 19:59, 7 January 2013
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-	{{Seed}}
	[[Image:2uxk.png\|left\|200px]]		[[Image:2uxk.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2uxk", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2uxk\| PDB=2uxk \| SCENE= }}		{{STRUCTURE_2uxk\| PDB=2uxk \| SCENE= }}

	===X-RAY HIGH RESOLUTION STRUCTURE OF THE PHOTOSYNTHETIC REACTION CENTER FROM RB. SPHAEROIDES AT PH 10 IN THE CHARGE-SEPARATED STATE===		===X-RAY HIGH RESOLUTION STRUCTURE OF THE PHOTOSYNTHETIC REACTION CENTER FROM RB. SPHAEROIDES AT PH 10 IN THE CHARGE-SEPARATED STATE===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17570397}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17570397 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_17570397}}		{{ABSTRACT_PUBMED_17570397}}

	==About this Structure==		==About this Structure==
-	~~2UXK~~ is a 3 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UXK OCA].	+	[[2uxk]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UXK OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17570397~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017570397</ref><references group="xtra"/>
	[[Category: Rhodobacter sphaeroides]]		[[Category: Rhodobacter sphaeroides]]
	[[Category: Diehm, R.]]		[[Category: Diehm, R.]]
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	[[Category: Transmembrane]]		[[Category: Transmembrane]]
	[[Category: Transport]]		[[Category: Transport]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 23:37:40 2009''

OCA at 21:37, 16 February 2009

2009-02-16T21:37:41Z

←Older revision		Revision as of 21:37, 16 February 2009
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	==About this Structure==		==About this Structure==
-	2UXK is a ~~[[Protein complex]]~~ structure of sequences from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UXK OCA].	+	2UXK is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UXK OCA].

	==Reference==		==Reference==
-	pH modulates the quinone position in the photosynthetic reaction center from Rhodobacter sphaeroides in the neutral and charge separated states., Koepke J, Krammer EM, Klingen AR, Sebban P, Ullmann GM, Fritzsch G, J Mol Biol. 2007 Aug 10;371(2):396-409. Epub 2007 May 10. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/17570397 17570397]~~	+	<ref group="xtra">PMID:17570397</ref><references group="xtra"/>
-	~~[[Category: Protein complex]]~~	+
	[[Category: Rhodobacter sphaeroides]]		[[Category: Rhodobacter sphaeroides]]
	[[Category: Diehm, R.]]		[[Category: Diehm, R.]]
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	[[Category: Transport]]		[[Category: Transport]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon ~~Jul 28 03~~:54:~~54 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 23:37:40 2009''