2v3i - Revision history

OCA at 15:04, 13 December 2023

2023-12-13T15:04:46Z

←Older revision		Revision as of 15:04, 13 December 2023
Line 3:		Line 3:
	<StructureSection load='2v3i' size='340' side='right'caption='[[2v3i]], [[Resolution\|resolution]] 1.05Å' scene=''>		<StructureSection load='2v3i' size='340' side='right'caption='[[2v3i]], [[Resolution\|resolution]] 1.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2v3i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Hypocrea_jecorina Hypocrea jecorina~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V3I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2v3i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Trichoderma_reesei Trichoderma reesei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V3I FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=XX6:2-{[(2R)-2-HYDROXY-3-(9-PHENANTHRYLOXY)PROPYL]AMINO}PROPANE-1,3-DIOL'>XX6</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.05Å</td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene>, <scene name='pdbligand=XX6:2-{[(2R)-2-HYDROXY-3-(9-PHENANTHRYLOXY)PROPYL]AMINO}PROPANE-1,3-DIOL'>XX6</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1az6\|1az6]], [[1azh\|1azh]], [[1azj\|1azj]], [[1azk\|1azk]], [[1cbh\|1cbh]], [[1cel\|1cel]], [[1dy4\|1dy4]], [[1egn\|1egn]], [[1q2b\|1q2b]], [[1q2e\|1q2e]], [[2cbh\|2cbh]], [[2cel\|2cel]], [[2jf8\|2jf8]], [[3cel\|3cel]], [[4cel\|4cel]], [[5cel\|5cel]], [[6cel\|6cel]], [[7cel\|7cel]], [[8cel\|8cel]]</div></td></tr>	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Cellulose_1,4-beta-cellobiosidase_(non-reducing_end) Cellulose 1,4-beta-cellobiosidase (non-reducing end)], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.91 3.2.1.91] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3i OCA], [https://pdbe.org/2v3i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v3i RCSB], [https://www.ebi.ac.uk/pdbsum/2v3i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v3i ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3i OCA], [https://pdbe.org/2v3i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v3i RCSB], [https://www.ebi.ac.uk/pdbsum/2v3i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v3i ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/GUX1_HYPJE GUX1_HYPJE]] The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the dissaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.	+	[https://www.uniprot.org/uniprot/GUX1_HYPJE GUX1_HYPJE] The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the dissaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 28:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Hypocrea jecorina]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Berg, U]]	+	[[Category: Trichoderma reesei]]
-	[[Category: Fagerstrom, A]]	+	[[Category: Berg U]]
-	[[Category: Sandgren, M]]	+	[[Category: Fagerstrom A]]
-	[[Category: Stahlberg, J]]	+	[[Category: Sandgren M]]
-	~~[[Category: Carbohydrate metabolism]]~~	+	[[Category: Stahlberg J]]
-	~~[[Category: Cellulose degradation]]~~	+
-	~~[[Category: Chiral separation]]~~	+
-	~~[[Category: Glycoprotein]]~~	+
-	~~[[Category: Glycosidase]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Polysaccharide degradation]]~~	+
-	~~[[Category: Pyrrolidone carboxylic acid~~]]	+

OCA at 17:27, 15 December 2021

2021-12-15T17:27:52Z

OCA at 07:39, 11 March 2020

2020-03-11T07:39:32Z

←Older revision		Revision as of 07:39, 11 March 2020
Line 1:		Line 1:

	==Hypocrea jecorina Cel7A in complex with (R)-dihydroxy-phenanthrenolol==		==Hypocrea jecorina Cel7A in complex with (R)-dihydroxy-phenanthrenolol==
-	<StructureSection load='2v3i' size='340' side='right' caption='[[2v3i]], [[Resolution\|resolution]] 1.05Å' scene=''>	+	<StructureSection load='2v3i' size='340' side='right'caption='[[2v3i]], [[Resolution\|resolution]] 1.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2v3i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Hypocrea_jecorina Hypocrea jecorina]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V3I FirstGlance]. <br>		<table><tr><td colspan='2'>[[2v3i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Hypocrea_jecorina Hypocrea jecorina]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V3I FirstGlance]. <br>
Line 24:		Line 24:

	==See Also==		==See Also==
-	*[[Cellobiohydrolase\|Cellobiohydrolase]]	+	*[[Cellobiohydrolase 3D structures\|Cellobiohydrolase 3D structures]]
-	*[[Glucanase\|Glucanase]]	+	*[[Glucanase 3D structures\|Glucanase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Hypocrea jecorina]]		[[Category: Hypocrea jecorina]]
		+	[[Category: Large Structures]]
	[[Category: Berg, U]]		[[Category: Berg, U]]
	[[Category: Fagerstrom, A]]		[[Category: Fagerstrom, A]]

OCA at 08:13, 12 September 2018

2018-09-12T08:13:30Z

←Older revision		Revision as of 08:13, 12 September 2018
Line 1:		Line 1:

-	==~~HYPOCREA JECORINA CEL7A IN COMPLEX WITH~~ (R)-~~DIHYDROXY~~-~~PHENANTHRENOLOL~~==	+	==Hypocrea jecorina Cel7A in complex with (R)-dihydroxy-phenanthrenolol==
	<StructureSection load='2v3i' size='340' side='right' caption='[[2v3i]], [[Resolution\|resolution]] 1.05Å' scene=''>		<StructureSection load='2v3i' size='340' side='right' caption='[[2v3i]], [[Resolution\|resolution]] 1.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2v3i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Trichoderma_reesei Trichoderma reesei~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V3I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2v3i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Hypocrea_jecorina Hypocrea jecorina]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V3I FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=XX6:2-{[(2R)-2-HYDROXY-3-(9-PHENANTHRYLOXY)PROPYL]AMINO}PROPANE-1,3-DIOL'>XX6</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=XX6:2-{[(2R)-2-HYDROXY-3-(9-PHENANTHRYLOXY)PROPYL]AMINO}PROPANE-1,3-DIOL'>XX6</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
Line 16:		Line 16:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v3/2v3i_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v3/2v3i_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 28:		Line 28:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Trichoderma reesei~~]]	+	[[Category: Hypocrea jecorina]]
	[[Category: Berg, U]]		[[Category: Berg, U]]
	[[Category: Fagerstrom, A]]		[[Category: Fagerstrom, A]]

OCA at 01:22, 5 August 2016

2016-08-05T01:22:01Z

←Older revision		Revision as of 01:22, 5 August 2016
Line 1:		Line 1:
		+
	==HYPOCREA JECORINA CEL7A IN COMPLEX WITH (R)-DIHYDROXY-PHENANTHRENOLOL==		==HYPOCREA JECORINA CEL7A IN COMPLEX WITH (R)-DIHYDROXY-PHENANTHRENOLOL==
	<StructureSection load='2v3i' size='340' side='right' caption='[[2v3i]], [[Resolution\|resolution]] 1.05Å' scene=''>		<StructureSection load='2v3i' size='340' side='right' caption='[[2v3i]], [[Resolution\|resolution]] 1.05Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1az6\|1az6]], [[1azh\|1azh]], [[1azj\|1azj]], [[1azk\|1azk]], [[1cbh\|1cbh]], [[1cel\|1cel]], [[1dy4\|1dy4]], [[1egn\|1egn]], [[1q2b\|1q2b]], [[1q2e\|1q2e]], [[2cbh\|2cbh]], [[2cel\|2cel]], [[2jf8\|2jf8]], [[3cel\|3cel]], [[4cel\|4cel]], [[5cel\|5cel]], [[6cel\|6cel]], [[7cel\|7cel]], [[8cel\|8cel]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1az6\|1az6]], [[1azh\|1azh]], [[1azj\|1azj]], [[1azk\|1azk]], [[1cbh\|1cbh]], [[1cel\|1cel]], [[1dy4\|1dy4]], [[1egn\|1egn]], [[1q2b\|1q2b]], [[1q2e\|1q2e]], [[2cbh\|2cbh]], [[2cel\|2cel]], [[2jf8\|2jf8]], [[3cel\|3cel]], [[4cel\|4cel]], [[5cel\|5cel]], [[6cel\|6cel]], [[7cel\|7cel]], [[8cel\|8cel]]</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulose_1,4-beta-~~cellobiosidase~~ Cellulose 1,4-beta-cellobiosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.91 3.2.1.91] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulose_1,4-beta-cellobiosidase_(non-reducing_end) Cellulose 1,4-beta-cellobiosidase (non-reducing end)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.91 3.2.1.91] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v3i RCSB], [http://www.ebi.ac.uk/pdbsum/2v3i PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3i OCA], [http://pdbe.org/2v3i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2v3i RCSB], [http://www.ebi.ac.uk/pdbsum/2v3i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2v3i ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~GUX1_TRIRE GUX1_TRIRE~~]] The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the dissaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.	+	[[http://www.uniprot.org/uniprot/GUX1_HYPJE GUX1_HYPJE]] The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the dissaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 19:		Line 20:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2v3i ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

Line 27:		Line 28:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Cellulose 1,4-beta-cellobiosidase]]
	[[Category: Trichoderma reesei]]		[[Category: Trichoderma reesei]]
	[[Category: Berg, U]]		[[Category: Berg, U]]

OCA at 14:40, 25 December 2014

2014-12-25T14:40:24Z

←Older revision		Revision as of 14:40, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2v3i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Trichoderma_reesei Trichoderma reesei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V3I FirstGlance]. <br>		<table><tr><td colspan='2'>[[2v3i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Trichoderma_reesei Trichoderma reesei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V3I FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=XX6:2-{[(2R)-2-HYDROXY-3-(9-PHENANTHRYLOXY)PROPYL]AMINO}PROPANE-1,3-DIOL'>XX6</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=XX6:2-{[(2R)-2-HYDROXY-3-(9-PHENANTHRYLOXY)PROPYL]AMINO}PROPANE-1,3-DIOL'>XX6</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1az6\|1az6]], [[1azh\|1azh]], [[1azj\|1azj]], [[1azk\|1azk]], [[1cbh\|1cbh]], [[1cel\|1cel]], [[1dy4\|1dy4]], [[1egn\|1egn]], [[1q2b\|1q2b]], [[1q2e\|1q2e]], [[2cbh\|2cbh]], [[2cel\|2cel]], [[2jf8\|2jf8]], [[3cel\|3cel]], [[4cel\|4cel]], [[5cel\|5cel]], [[6cel\|6cel]], [[7cel\|7cel]], [[8cel\|8cel]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1az6\|1az6]], [[1azh\|1azh]], [[1azj\|1azj]], [[1azk\|1azk]], [[1cbh\|1cbh]], [[1cel\|1cel]], [[1dy4\|1dy4]], [[1egn\|1egn]], [[1q2b\|1q2b]], [[1q2e\|1q2e]], [[2cbh\|2cbh]], [[2cel\|2cel]], [[2jf8\|2jf8]], [[3cel\|3cel]], [[4cel\|4cel]], [[5cel\|5cel]], [[6cel\|6cel]], [[7cel\|7cel]], [[8cel\|8cel]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulose_1,4-beta-cellobiosidase Cellulose 1,4-beta-cellobiosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.91 3.2.1.91] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulose_1,4-beta-cellobiosidase Cellulose 1,4-beta-cellobiosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.91 3.2.1.91] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v3i RCSB], [http://www.ebi.ac.uk/pdbsum/2v3i PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v3i RCSB], [http://www.ebi.ac.uk/pdbsum/2v3i PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/GUX1_TRIRE GUX1_TRIRE]] The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the dissaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 27:		Line 29:
	[[Category: Cellulose 1,4-beta-cellobiosidase]]		[[Category: Cellulose 1,4-beta-cellobiosidase]]
	[[Category: Trichoderma reesei]]		[[Category: Trichoderma reesei]]
-	[[Category: Berg, U.]]	+	[[Category: Berg, U]]
-	[[Category: Fagerstrom, A.]]	+	[[Category: Fagerstrom, A]]
-	[[Category: Sandgren, M.]]	+	[[Category: Sandgren, M]]
-	[[Category: Stahlberg, J.]]	+	[[Category: Stahlberg, J]]
	[[Category: Carbohydrate metabolism]]		[[Category: Carbohydrate metabolism]]
	[[Category: Cellulose degradation]]		[[Category: Cellulose degradation]]

OCA at 09:33, 29 September 2014

2014-09-29T09:33:14Z

←Older revision		Revision as of 09:33, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:2v3i.png\|left\|200px]]~~	+	==HYPOCREA JECORINA CEL7A IN COMPLEX WITH (R)-DIHYDROXY-PHENANTHRENOLOL==
-		+	<StructureSection load='2v3i' size='340' side='right' caption='[[2v3i]], [[Resolution\|resolution]] 1.05Å' scene=''>
-	~~{{STRUCTURE_2v3i\| PDB=2v3i \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2v3i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Trichoderma_reesei Trichoderma reesei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V3I FirstGlance]. <br>
-	===HYPOCREA JECORINA CEL7A IN COMPLEX WITH (R)-DIHYDROXY-PHENANTHRENOLOL===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=XX6:2-{[(2R)-2-HYDROXY-3-(9-PHENANTHRYLOXY)PROPYL]AMINO}PROPANE-1,3-DIOL'>XX6</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1az6\|1az6]], [[1azh\|1azh]], [[1azj\|1azj]], [[1azk\|1azk]], [[1cbh\|1cbh]], [[1cel\|1cel]], [[1dy4\|1dy4]], [[1egn\|1egn]], [[1q2b\|1q2b]], [[1q2e\|1q2e]], [[2cbh\|2cbh]], [[2cel\|2cel]], [[2jf8\|2jf8]], [[3cel\|3cel]], [[4cel\|4cel]], [[5cel\|5cel]], [[6cel\|6cel]], [[7cel\|7cel]], [[8cel\|8cel]]</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulose_1,4-beta-cellobiosidase Cellulose 1,4-beta-cellobiosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.91 3.2.1.91] </span></td></tr>
-	[[2v3i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Trichoderma_reesei Trichoderma reesei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3I OCA].	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v3i RCSB], [http://www.ebi.ac.uk/pdbsum/2v3i PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v3/2v3i_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Cellobiohydrolase\|Cellobiohydrolase]]		*[[Cellobiohydrolase\|Cellobiohydrolase]]
	*[[Glucanase\|Glucanase]]		*[[Glucanase\|Glucanase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Cellulose 1,4-beta-cellobiosidase]]		[[Category: Cellulose 1,4-beta-cellobiosidase]]
	[[Category: Trichoderma reesei]]		[[Category: Trichoderma reesei]]

OCA at 17:55, 20 October 2012

2012-10-20T17:55:32Z

←Older revision		Revision as of 17:55, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
-	[[2v3i]] is a 1 chain structure ~~of [[Cellobiohydrolase]] and [[Glucanase]]~~ with sequence from [http://en.wikipedia.org/wiki/Trichoderma_reesei Trichoderma reesei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3I OCA].	+	[[2v3i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Trichoderma_reesei Trichoderma reesei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3I OCA].

	==See Also==		==See Also==

OCA: Protected "2v3i" [edit=sysop:move=sysop]

2012-07-27T02:25:47Z

Protected "2v3i" [edit=sysop:move=sysop]

←Older revision

Revision as of 02:25, 27 July 2012

OCA at 02:25, 27 July 2012

2012-07-27T02:25:45Z

←Older revision		Revision as of 02:25, 27 July 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2v3i.png\|left\|200px]]		[[Image:2v3i.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2v3i", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2v3i\| PDB=2v3i \| SCENE= }}		{{STRUCTURE_2v3i\| PDB=2v3i \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~2V3I~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Hypocrea_jecorina Hypocrea jecorina~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3I OCA].	+	[[2v3i]] is a 1 chain structure of [[Cellobiohydrolase]] and [[Glucanase]] with sequence from [http://en.wikipedia.org/wiki/Trichoderma_reesei Trichoderma reesei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3I OCA].
		+
		+	==See Also==
		+	*[[Cellobiohydrolase\|Cellobiohydrolase]]
		+	*[[Glucanase\|Glucanase]]
	[[Category: Cellulose 1,4-beta-cellobiosidase]]		[[Category: Cellulose 1,4-beta-cellobiosidase]]
-	[[Category: ~~Hypocrea jecorina~~]]	+	[[Category: Trichoderma reesei]]
	[[Category: Berg, U.]]		[[Category: Berg, U.]]
	[[Category: Fagerstrom, A.]]		[[Category: Fagerstrom, A.]]
Line 29:		Line 26:
	[[Category: Polysaccharide degradation]]		[[Category: Polysaccharide degradation]]
	[[Category: Pyrrolidone carboxylic acid]]		[[Category: Pyrrolidone carboxylic acid]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 18:56:48 2009''

←Older revision		Revision as of 17:27, 15 December 2021
Line 3:		Line 3:
	<StructureSection load='2v3i' size='340' side='right'caption='[[2v3i]], [[Resolution\|resolution]] 1.05Å' scene=''>		<StructureSection load='2v3i' size='340' side='right'caption='[[2v3i]], [[Resolution\|resolution]] 1.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2v3i]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Hypocrea_jecorina Hypocrea jecorina]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3I OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2V3I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2v3i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Hypocrea_jecorina Hypocrea jecorina]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V3I FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=XX6:2-{[(2R)-2-HYDROXY-3-(9-PHENANTHRYLOXY)PROPYL]AMINO}PROPANE-1,3-DIOL'>XX6</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=XX6:2-{[(2R)-2-HYDROXY-3-(9-PHENANTHRYLOXY)PROPYL]AMINO}PROPANE-1,3-DIOL'>XX6</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1az6\|1az6]], [[1azh\|1azh]], [[1azj\|1azj]], [[1azk\|1azk]], [[1cbh\|1cbh]], [[1cel\|1cel]], [[1dy4\|1dy4]], [[1egn\|1egn]], [[1q2b\|1q2b]], [[1q2e\|1q2e]], [[2cbh\|2cbh]], [[2cel\|2cel]], [[2jf8\|2jf8]], [[3cel\|3cel]], [[4cel\|4cel]], [[5cel\|5cel]], [[6cel\|6cel]], [[7cel\|7cel]], [[8cel\|8cel]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1az6\|1az6]], [[1azh\|1azh]], [[1azj\|1azj]], [[1azk\|1azk]], [[1cbh\|1cbh]], [[1cel\|1cel]], [[1dy4\|1dy4]], [[1egn\|1egn]], [[1q2b\|1q2b]], [[1q2e\|1q2e]], [[2cbh\|2cbh]], [[2cel\|2cel]], [[2jf8\|2jf8]], [[3cel\|3cel]], [[4cel\|4cel]], [[5cel\|5cel]], [[6cel\|6cel]], [[7cel\|7cel]], [[8cel\|8cel]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Cellulose_1,4-beta-cellobiosidase_(non-reducing_end) Cellulose 1,4-beta-cellobiosidase (non-reducing end)], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.91 3.2.1.91] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Cellulose_1,4-beta-cellobiosidase_(non-reducing_end) Cellulose 1,4-beta-cellobiosidase (non-reducing end)], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.91 3.2.1.91] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2v3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3i OCA], [~~http~~://pdbe.org/2v3i PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2v3i RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2v3i PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2v3i ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3i OCA], [https://pdbe.org/2v3i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v3i RCSB], [https://www.ebi.ac.uk/pdbsum/2v3i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v3i ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/GUX1_HYPJE GUX1_HYPJE]] The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the dissaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.	+	[[https://www.uniprot.org/uniprot/GUX1_HYPJE GUX1_HYPJE]] The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the dissaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]