2vjj - Revision history

OCA at 15:21, 13 December 2023

2023-12-13T15:21:46Z

←Older revision		Revision as of 15:21, 13 December 2023
Line 3:		Line 3:
	<StructureSection load='2vjj' size='340' side='right'caption='[[2vjj]], [[Resolution\|resolution]] 1.59Å' scene=''>		<StructureSection load='2vjj' size='340' side='right'caption='[[2vjj]], [[Resolution\|resolution]] 1.59Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vjj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Bphk6 Bphk6~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VJJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vjj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacteria_phage_HK620 Enterobacteria phage HK620]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VJJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=~~GLC~~:~~ALPHA~~-D-~~GLUCOSE~~'>~~GLC~~</scene>, <scene name='pdbligand=~~GOL~~:~~GLYCEROL~~'>~~GOL~~</scene>, <scene name='pdbligand=K:~~POTASSIUM+ION~~'>K</scene>, <scene name='pdbligand=~~GAL~~:~~BETA-D-GALACTOSE~~'>~~GAL~~</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=RAM:ALPHA-L-RHAMNOSE'>RAM</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.59Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2vji\|2vji]]</div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=RAM:ALPHA-L-RHAMNOSE'>RAM</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vjj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vjj OCA], [https://pdbe.org/2vjj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vjj RCSB], [https://www.ebi.ac.uk/pdbsum/2vjj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vjj ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vjj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vjj OCA], [https://pdbe.org/2vjj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vjj RCSB], [https://www.ebi.ac.uk/pdbsum/2vjj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vjj ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9AYY6_BPHK6 Q9AYY6_BPHK6]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 19:		Line 21:

	==See Also==		==See Also==
-	*[[Tailspike protein\|Tailspike protein]]	+	*[[Tailspike protein 3D structures\|Tailspike protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bphk6~~]]	+	[[Category: Enterobacteria phage HK620]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Barbirz, S]]	+	[[Category: Barbirz S]]
-	[[Category: Heinemann, U]]	+	[[Category: Heinemann U]]
-	[[Category: Mueller~~, J J~~]]	+	[[Category: Mueller JJ]]
-	[[Category: Seckler, R]]	+	[[Category: Seckler R]]
-	[[Category: Uetrecht, C]]	+	[[Category: Uetrecht C]]
-	~~[[Category: Endo-n-acetylglucosaminidase]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Right-handed parallel beta-helix]]~~	+
-	~~[[Category: Tailspike]]~~	+
-	~~[[Category: Viral adhesion protein]]~~	+
-	~~[[Category: Viral protein~~]]	+

OCA at 05:24, 10 August 2022

2022-08-10T05:24:11Z

←Older revision		Revision as of 05:24, 10 August 2022
Line 3:		Line 3:
	<StructureSection load='2vjj' size='340' side='right'caption='[[2vjj]], [[Resolution\|resolution]] 1.59Å' scene=''>		<StructureSection load='2vjj' size='340' side='right'caption='[[2vjj]], [[Resolution\|resolution]] 1.59Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vjj]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bphk6 Bphk6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2VJJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vjj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bphk6 Bphk6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VJJ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=RAM:ALPHA-L-RHAMNOSE'>RAM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=RAM:ALPHA-L-RHAMNOSE'>RAM</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vji\|2vji]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2vji\|2vji]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2vjj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vjj OCA], [~~http~~://pdbe.org/2vjj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2vjj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2vjj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2vjj ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vjj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vjj OCA], [https://pdbe.org/2vjj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vjj RCSB], [https://www.ebi.ac.uk/pdbsum/2vjj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vjj ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:58, 4 November 2020

2020-11-04T07:58:29Z

←Older revision		Revision as of 07:58, 4 November 2020
Line 1:		Line 1:

	==TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE==		==TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE==
-	<StructureSection load='2vjj' size='340' side='right' caption='[[2vjj]], [[Resolution\|resolution]] 1.59Å' scene=''>	+	<StructureSection load='2vjj' size='340' side='right'caption='[[2vjj]], [[Resolution\|resolution]] 1.59Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vjj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk6 Bphk6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJJ OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2VJJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vjj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk6 Bphk6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJJ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2VJJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=~~GAL~~:~~BETA~~-D-~~GALACTOSE~~'>~~GAL~~</scene>, <scene name='pdbligand=~~GLC~~:~~ALPHA-D-GLUCOSE~~'>~~GLC~~</scene>, <scene name='pdbligand=~~GOL~~:~~GLYCEROL~~'>~~GOL~~</scene>, <scene name='pdbligand=K:~~POTASSIUM+ION~~'>K</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=RAM:ALPHA-L-RHAMNOSE'>RAM</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=RAM:ALPHA-L-RHAMNOSE'>RAM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vji\|2vji]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vji\|2vji]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2vjj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vjj OCA], [http://pdbe.org/2vjj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vjj RCSB], [http://www.ebi.ac.uk/pdbsum/2vjj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vjj ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2vjj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vjj OCA], [http://pdbe.org/2vjj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vjj RCSB], [http://www.ebi.ac.uk/pdbsum/2vjj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vjj ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 17:		Line 17:
	</div>		</div>
	<div class="pdbe-citations 2vjj" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2vjj" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Tailspike protein\|Tailspike protein]]
	== References ==		== References ==
	<references/>		<references/>
Line 22:		Line 25:
	</StructureSection>		</StructureSection>
	[[Category: Bphk6]]		[[Category: Bphk6]]
		+	[[Category: Large Structures]]
	[[Category: Barbirz, S]]		[[Category: Barbirz, S]]
	[[Category: Heinemann, U]]		[[Category: Heinemann, U]]

OCA at 20:57, 19 September 2018

2018-09-19T20:57:27Z

←Older revision		Revision as of 20:57, 19 September 2018
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vjj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk6 Bphk6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VJJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vjj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk6 Bphk6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VJJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=~~GLC~~:~~ALPHA~~-D-~~GLUCOSE~~'>~~GLC~~</scene>, <scene name='pdbligand=~~GOL~~:~~GLYCEROL~~'>~~GOL~~</scene>, <scene name='pdbligand=K:~~POTASSIUM+ION~~'>K</scene>, <scene name='pdbligand=~~GAL~~:~~BETA-D-GALACTOSE~~'>~~GAL~~</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=RAM:ALPHA-L-RHAMNOSE'>RAM</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=RAM:ALPHA-L-RHAMNOSE'>RAM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vji\|2vji]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vji\|2vji]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vjj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vjj OCA], [http://pdbe.org/2vjj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vjj RCSB], [http://www.ebi.ac.uk/pdbsum/2vjj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vjj ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vjj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vjj OCA], [http://pdbe.org/2vjj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vjj RCSB], [http://www.ebi.ac.uk/pdbsum/2vjj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vjj ProSAT]</span></td></tr>

OCA at 19:59, 11 August 2016

2016-08-11T19:59:29Z

←Older revision		Revision as of 19:59, 11 August 2016
Line 1:		Line 1:
		+
	==TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE==		==TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE==
	<StructureSection load='2vjj' size='340' side='right' caption='[[2vjj]], [[Resolution\|resolution]] 1.59Å' scene=''>		<StructureSection load='2vjj' size='340' side='right' caption='[[2vjj]], [[Resolution\|resolution]] 1.59Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=RAM:ALPHA-L-RHAMNOSE'>RAM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=RAM:ALPHA-L-RHAMNOSE'>RAM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vji\|2vji]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vji\|2vji]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vjj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vjj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vjj RCSB], [http://www.ebi.ac.uk/pdbsum/2vjj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vjj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vjj OCA], [http://pdbe.org/2vjj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vjj RCSB], [http://www.ebi.ac.uk/pdbsum/2vjj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vjj ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 15:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2vjj" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 11:46, 21 January 2015

2015-01-21T11:46:58Z

←Older revision		Revision as of 11:46, 21 January 2015
Line 2:		Line 2:
	<StructureSection load='2vjj' size='340' side='right' caption='[[2vjj]], [[Resolution\|resolution]] 1.59Å' scene=''>		<StructureSection load='2vjj' size='340' side='right' caption='[[2vjj]], [[Resolution\|resolution]] 1.59Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vjj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Salmonella_phage_hk620 Salmonella phage hk620~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VJJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vjj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk6 Bphk6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VJJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=~~GAL~~:~~BETA~~-D-~~GALACTOSE~~'>~~GAL~~</scene>, <scene name='pdbligand=~~GLC~~:~~ALPHA-D-GLUCOSE~~'>~~GLC~~</scene>, <scene name='pdbligand=~~GOL~~:~~GLYCEROL~~'>~~GOL~~</scene>, <scene name='pdbligand=K:~~POTASSIUM+ION~~'>K</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=RAM:ALPHA-L-RHAMNOSE'>RAM</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=RAM:ALPHA-L-RHAMNOSE'>RAM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vji\|2vji]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vji\|2vji]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vjj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vjj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vjj RCSB], [http://www.ebi.ac.uk/pdbsum/2vjj PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vjj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vjj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vjj RCSB], [http://www.ebi.ac.uk/pdbsum/2vjj PDBsum]</span></td></tr>
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Salmonella phage hk620~~]]	+	[[Category: Bphk6]]
-	[[Category: Barbirz, S.]]	+	[[Category: Barbirz, S]]
-	[[Category: Heinemann, U.]]	+	[[Category: Heinemann, U]]
-	[[Category: Mueller, J J.]]	+	[[Category: Mueller, J J]]
-	[[Category: Seckler, R.]]	+	[[Category: Seckler, R]]
-	[[Category: Uetrecht, C.]]	+	[[Category: Uetrecht, C]]
	[[Category: Endo-n-acetylglucosaminidase]]		[[Category: Endo-n-acetylglucosaminidase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 11:35, 20 October 2014

2014-10-20T11:35:02Z

←Older revision		Revision as of 11:35, 20 October 2014
Line 1:		Line 1:
-	[[~~Image:~~2vjj.~~png~~\|~~left~~\|~~200px~~]]	+	==TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE==
		+	<StructureSection load='2vjj' size='340' side='right' caption='[[2vjj]], [[Resolution\|resolution]] 1.59Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2vjj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_phage_hk620 Salmonella phage hk620]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VJJ FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=RAM:ALPHA-L-RHAMNOSE'>RAM</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vji\|2vji]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vjj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vjj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vjj RCSB], [http://www.ebi.ac.uk/pdbsum/2vjj PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Bacteriophage HK620 infects Escherichia coli H and is closely related to Shigella phage Sf6 and Salmonella phage P22. All three Podoviridae recognize and cleave their respective host cell receptor polysaccharide by homotrimeric tailspike proteins. The three proteins exhibit high sequence identity in the 110 residues of their N-terminal particle-binding domains, but no apparent sequence similarity in their major, receptor-binding parts. We have biochemically characterized the receptor-binding part of HK620 tailspike and determined its crystal structure to 1.38 A resolution. Its major domain is a right-handed parallel beta-helix, as in Sf6 and P22 tailspikes. HK620 tailspike has endo-N-acetylglucosaminidase activity and produces hexasaccharides of an O18A1-type O-antigen. As indicated by the structure of a hexasaccharide complex determined at 1.6 A resolution, the endoglycosidase-active sites are located intramolecularly, as in P22, and not between subunits, as in Sf6 tailspike. In contrast, the extreme C-terminal domain of HK620 tailspike forms a beta-sandwich, as in Sf6 and unlike P22 tailspike. Despite the different folds, structure-based sequence alignments of the C-termini reveal motifs conserved between the three proteins. We propose that the tailspike genes of P22, Sf6 and HK620 have a common precursor and are not mosaics of unrelated gene fragments.

-	~~{{STRUCTURE_2vjj\| PDB=2vjj \| SCENE= }}~~	+	Crystal structure of Escherichia coli phage HK620 tailspike: podoviral tailspike endoglycosidase modules are evolutionarily related.,Barbirz S, Muller JJ, Uetrecht C, Clark AJ, Heinemann U, Seckler R Mol Microbiol. 2008 Jun 11;. PMID:18547389<ref>PMID:18547389</ref>

-	~~===TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18547389}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2vjj]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Salmonella_phage_hk620 Salmonella phage hk620]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2VJJ OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:018547389<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Salmonella phage hk620]]		[[Category: Salmonella phage hk620]]
	[[Category: Barbirz, S.]]		[[Category: Barbirz, S.]]

OCA: Protected "2vjj" [edit=sysop:move=sysop]

2013-01-07T22:10:49Z

Protected "2vjj" [edit=sysop:move=sysop]

←Older revision

Revision as of 22:10, 7 January 2013

OCA at 22:10, 7 January 2013

2013-01-07T22:10:46Z

←Older revision		Revision as of 22:10, 7 January 2013
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-	{{Seed}}
	[[Image:2vjj.png\|left\|200px]]		[[Image:2vjj.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_2vjj\| PDB=2vjj \| SCENE= }}		{{STRUCTURE_2vjj\| PDB=2vjj \| SCENE= }}

	===TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE===		===TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE===

-
-	<!--
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	{{ABSTRACT_PUBMED_18547389}}		{{ABSTRACT_PUBMED_18547389}}

	==About this Structure==		==About this Structure==
-	~~2VJJ is a~~ [[~~Single protein~~]] structure of sequence from [http://en.wikipedia.org/wiki/~~Enterobacteria_phage_hk620 Enterobacteria~~ phage hk620]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJJ OCA].	+	[[2vjj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_phage_hk620 Salmonella phage hk620]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJJ OCA].

	==Reference==		==Reference==
-	Crystal structure of Escherichia coli phage HK620 tailspike: podoviral tailspike endoglycosidase modules are evolutionarily related., Barbirz S, Muller JJ, Uetrecht C, Clark AJ, Heinemann U, Seckler R, Mol Microbiol. 2008 Jun 11;. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/18547389 18547389]~~	+	<ref group="xtra">PMID:018547389</ref><references group="xtra"/>
-	[[Category: ~~Enterobacteria~~ phage hk620]]	+	[[Category: Salmonella phage hk620]]
-	~~[[Category: Single protein~~]]	+
	[[Category: Barbirz, S.]]		[[Category: Barbirz, S.]]
	[[Category: Heinemann, U.]]		[[Category: Heinemann, U.]]
Line 37:		Line 24:
	[[Category: Viral adhesion protein]]		[[Category: Viral adhesion protein]]
	[[Category: Viral protein]]		[[Category: Viral protein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 02:34:18 2008''

OCA at 23:34, 28 July 2008

2008-07-28T23:34:23Z

←Older revision		Revision as of 23:34, 28 July 2008
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	{{Seed}}		{{Seed}}
-	[[Image:2vjj.~~jpg~~\|left\|200px]]	+	[[Image:2vjj.png\|left\|200px]]

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-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu~~ Jul ~~3 11~~:22:44 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 02:34:18 2008''