2vn2 - Revision history

OCA at 10:01, 9 May 2024

2024-05-09T10:01:49Z

←Older revision		Revision as of 10:01, 9 May 2024
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	<StructureSection load='2vn2' size='340' side='right'caption='[[2vn2]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2vn2' size='340' side='right'caption='[[2vn2]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vn2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Geoka Geoka~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VN2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VN2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vn2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_kaustophilus_HTA426 Geobacillus kaustophilus HTA426]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VN2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VN2 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vn2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vn2 OCA], [https://pdbe.org/2vn2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vn2 RCSB], [https://www.ebi.ac.uk/pdbsum/2vn2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vn2 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vn2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vn2 OCA], [https://pdbe.org/2vn2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vn2 RCSB], [https://www.ebi.ac.uk/pdbsum/2vn2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vn2 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q5KXY1_GEOKA Q5KXY1_GEOKA]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Geoka~~]]	+	[[Category: Geobacillus kaustophilus HTA426]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Chang, Y W]]	+	[[Category: Chang Y-W]]
-	[[Category: Chen, W T]]	+	[[Category: Chen W-T]]
-	[[Category: Hsiao, C D]]	+	[[Category: Hsiao C-D]]
-	[[Category: Huang, C Y]]	+	[[Category: Huang C-Y]]
-	[[Category: Sun, Y J]]	+	[[Category: Sun Y-J]]
-	~~[[Category: Dna replication]]~~	+
-	~~[[Category: Dnad]]~~	+
-	~~[[Category: Primosome]]~~	+
-	~~[[Category: Replication~~]]	+

OCA at 11:40, 30 March 2022

2022-03-30T11:40:59Z

←Older revision		Revision as of 11:40, 30 March 2022
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	<StructureSection load='2vn2' size='340' side='right'caption='[[2vn2]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2vn2' size='340' side='right'caption='[[2vn2]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vn2]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Geoka Geoka]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VN2 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2VN2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vn2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Geoka Geoka]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VN2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VN2 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2vn2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vn2 OCA], [~~http~~://pdbe.org/2vn2 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2vn2 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2vn2 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2vn2 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vn2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vn2 OCA], [https://pdbe.org/2vn2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vn2 RCSB], [https://www.ebi.ac.uk/pdbsum/2vn2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vn2 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 08:11, 25 June 2020

2020-06-25T08:11:54Z

←Older revision		Revision as of 08:11, 25 June 2020
Line 1:		Line 1:

	==Crystal structure of the N-terminal domain of DnaD protein from Geobacillus kaustophilus HTA426==		==Crystal structure of the N-terminal domain of DnaD protein from Geobacillus kaustophilus HTA426==
-	<StructureSection load='2vn2' size='340' side='right' caption='[[2vn2]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='2vn2' size='340' side='right'caption='[[2vn2]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vn2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geoka Geoka]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VN2 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2VN2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vn2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geoka Geoka]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VN2 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2VN2 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2vn2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vn2 OCA], [http://pdbe.org/2vn2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vn2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vn2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vn2 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2vn2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vn2 OCA], [http://pdbe.org/2vn2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vn2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vn2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vn2 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Geoka]]		[[Category: Geoka]]
		+	[[Category: Large Structures]]
	[[Category: Chang, Y W]]		[[Category: Chang, Y W]]
	[[Category: Chen, W T]]		[[Category: Chen, W T]]

OCA at 21:22, 19 September 2018

2018-09-19T21:22:24Z

←Older revision		Revision as of 21:22, 19 September 2018
Line 1:		Line 1:
		+
	==Crystal structure of the N-terminal domain of DnaD protein from Geobacillus kaustophilus HTA426==		==Crystal structure of the N-terminal domain of DnaD protein from Geobacillus kaustophilus HTA426==
	<StructureSection load='2vn2' size='340' side='right' caption='[[2vn2]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2vn2' size='340' side='right' caption='[[2vn2]], [[Resolution\|resolution]] 2.30Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2vn2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geoka Geoka]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VN2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VN2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vn2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geoka Geoka]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VN2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VN2 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vn2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vn2 OCA], [http://pdbe.org/2vn2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vn2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vn2 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vn2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vn2 OCA], [http://pdbe.org/2vn2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vn2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vn2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vn2 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vn/2vn2_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vn/2vn2_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 05:26, 10 February 2016

2016-02-10T05:26:51Z

←Older revision		Revision as of 05:26, 10 February 2016
Line 2:		Line 2:
	<StructureSection load='2vn2' size='340' side='right' caption='[[2vn2]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2vn2' size='340' side='right' caption='[[2vn2]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vn2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Geobacillus_kaustophilus_hta426 Geobacillus kaustophilus hta426~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VN2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VN2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vn2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geoka Geoka]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VN2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VN2 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vn2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vn2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vn2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vn2 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vn2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vn2 OCA], [http://pdbe.org/2vn2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vn2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vn2 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vn2 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2vn2" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Geobacillus kaustophilus hta426~~]]	+	[[Category: Geoka]]
	[[Category: Chang, Y W]]		[[Category: Chang, Y W]]
	[[Category: Chen, W T]]		[[Category: Chen, W T]]

OCA at 15:58, 19 January 2015

2015-01-19T15:58:30Z

←Older revision		Revision as of 15:58, 19 January 2015
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Geobacillus kaustophilus hta426]]		[[Category: Geobacillus kaustophilus hta426]]
-	[[Category: Chang, Y W.]]	+	[[Category: Chang, Y W]]
-	[[Category: Chen, W T.]]	+	[[Category: Chen, W T]]
-	[[Category: Hsiao, C D.]]	+	[[Category: Hsiao, C D]]
-	[[Category: Huang, C Y.]]	+	[[Category: Huang, C Y]]
-	[[Category: Sun, Y J.]]	+	[[Category: Sun, Y J]]
	[[Category: Dna replication]]		[[Category: Dna replication]]
	[[Category: Dnad]]		[[Category: Dnad]]
	[[Category: Primosome]]		[[Category: Primosome]]
	[[Category: Replication]]		[[Category: Replication]]

OCA at 06:53, 10 October 2014

2014-10-10T06:53:01Z

←Older revision		Revision as of 06:53, 10 October 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vn2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacillus_kaustophilus_hta426 Geobacillus kaustophilus hta426]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VN2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VN2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vn2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacillus_kaustophilus_hta426 Geobacillus kaustophilus hta426]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VN2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VN2 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vn2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vn2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vn2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vn2 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vn2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vn2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vn2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vn2 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 07:10, 9 June 2014

2014-06-09T07:10:16Z

←Older revision		Revision as of 07:10, 9 June 2014
Line 1:		Line 1:
-	[[~~Image~~:2vn2.~~png\|left~~\|200px]]	+	==Crystal structure of the N-terminal domain of DnaD protein from Geobacillus kaustophilus HTA426==
		+	<StructureSection load='2vn2' size='340' side='right' caption='[[2vn2]], [[Resolution\|resolution]] 2.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2vn2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacillus_kaustophilus_hta426 Geobacillus kaustophilus hta426]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VN2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VN2 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vn2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vn2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vn2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vn2 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vn/2vn2_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The DnaD is one of the primosomal proteins that are required for initiation and re-initiation of chromosomal DNA replication in Gram-positive bacteria. The DnaD protein is composed of two major structural domains: an N-terminal oligomerization domain and a C-terminal ssDNA binding domain. Here, we report the crystal structure of the N-terminal domain (aa 1-128) of DnaD (DnaDn) of Geobacillus kaustophilus HTA426 at 2.3A resolution. The structure of DnaDn reveals an extended winged-helix fold, a typical double-stranded DNA binding motif as winged-helix proteins. DnaDn formed tetramers in the crystalline state, but the results of gel filtration chromatography further indicated that this domain of DnaD was a stable dimer in solution. The structural analysis of DnaDn may suggest the binding sites for DNA and DnaB, and an assembly mechanism for Gram-positive bacterial DNA replication primosome.

-	~~{{STRUCTURE_2vn2\| PDB=2vn2 \| SCENE= }}~~	+	Crystal structure of the N-terminal domain of Geobacillus kaustophilus HTA426 DnaD protein.,Huang CY, Chang YW, Chen WT Biochem Biophys Res Commun. 2008 Oct 17;375(2):220-4. Epub 2008 Aug 12. PMID:18703019<ref>PMID:18703019</ref>

-	~~===Crystal structure~~ of the ~~N-terminal domain of DnaD protein from Geobacillus kaustophilus HTA426===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18703019}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2vn2]] is a 4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Geobacillus_kaustophilus_hta426 Geobacillus kaustophilus hta426]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2VN2 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:018703019<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Geobacillus kaustophilus hta426]]		[[Category: Geobacillus kaustophilus hta426]]
	[[Category: Chang, Y W.]]		[[Category: Chang, Y W.]]

OCA: Protected "2vn2" [edit=sysop:move=sysop]

2012-08-29T05:09:27Z

Protected "2vn2" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:09, 29 August 2012

OCA at 05:09, 29 August 2012

2012-08-29T05:09:24Z

←Older revision		Revision as of 05:09, 29 August 2012
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-	{{Seed}}
	[[Image:2vn2.png\|left\|200px]]		[[Image:2vn2.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_2vn2\| PDB=2vn2 \| SCENE= }}		{{STRUCTURE_2vn2\| PDB=2vn2 \| SCENE= }}

-	===~~CRYSTAL STRUCTURE OF THE~~ N-~~TERMINAL DOMAIN OF DNAD PROTEIN FROM GEOBACILLUS KAUSTOPHILUS~~ HTA426===	+	===Crystal structure of the N-terminal domain of DnaD protein from Geobacillus kaustophilus HTA426===

		+	{{ABSTRACT_PUBMED_18703019}}

	==About this Structure==		==About this Structure==
-	~~2VN2~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Geobacillus_kaustophilus_hta426 Geobacillus kaustophilus hta426]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VN2 OCA].	+	[[2vn2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacillus_kaustophilus_hta426 Geobacillus kaustophilus hta426]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VN2 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:018703019</ref><references group="xtra"/>
	[[Category: Geobacillus kaustophilus hta426]]		[[Category: Geobacillus kaustophilus hta426]]
	[[Category: Chang, Y W.]]		[[Category: Chang, Y W.]]
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	[[Category: Primosome]]		[[Category: Primosome]]
	[[Category: Replication]]		[[Category: Replication]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 15:46:38 2009''