2wjh - Revision history

OCA at 15:59, 13 December 2023

2023-12-13T15:59:14Z

←Older revision		Revision as of 15:59, 13 December 2023
Line 3:		Line 3:
	<StructureSection load='2wjh' size='340' side='right'caption='[[2wjh]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2wjh' size='340' side='right'caption='[[2wjh]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2wjh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_43067 Atcc 43067~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WJH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WJH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2wjh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WJH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WJH FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2wji\|2wji]], [[2wjg\|2wjg]], [[2wjj\|2wjj]]</div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wjh OCA], [https://pdbe.org/2wjh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wjh RCSB], [https://www.ebi.ac.uk/pdbsum/2wjh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wjh ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wjh OCA], [https://pdbe.org/2wjh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wjh RCSB], [https://www.ebi.ac.uk/pdbsum/2wjh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wjh ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/FEOB_METJA FEOB_METJA]] Probable GTP-driven transporter of Fe(2+) ion (By similarity).	+	[https://www.uniprot.org/uniprot/FEOB_METJA FEOB_METJA] Probable GTP-driven transporter of Fe(2+) ion (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 43067]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Herrmann, C]]	+	[[Category: Methanocaldococcus jannaschii]]
-	[[Category: Koester, S]]	+	[[Category: Herrmann C]]
-	[[Category: Kuehlbrandt, W]]	+	[[Category: Koester S]]
-	[[Category: Wehner, M]]	+	[[Category: Kuehlbrandt W]]
-	[[Category: Yildiz, O]]	+	[[Category: Wehner M]]
-	~~[[Category: Cell membrane]]~~	+	[[Category: Yildiz O]]
-	~~[[Category: Ferrous iron transport]]~~	+
-	~~[[Category: Gnbp]]~~	+
-	~~[[Category: Gtp-binding]]~~	+
-	~~[[Category: Ion transport]]~~	+
-	~~[[Category: Iron]]~~	+
-	~~[[Category: Iron transport]]~~	+
-	~~[[Category: Membrane]]~~	+
-	~~[[Category: Membrane g-protein]]~~	+
-	~~[[Category: Metal transport]]~~	+
-	~~[[Category: Nucleotide binding motif]]~~	+
-	~~[[Category: Nucleotide-binding]]~~	+
-	~~[[Category: Transmembrane]]~~	+
-	~~[[Category: Transport~~]]	+

OCA at 11:08, 6 April 2022

2022-04-06T11:08:56Z

←Older revision		Revision as of 11:08, 6 April 2022
Line 3:		Line 3:
	<StructureSection load='2wjh' size='340' side='right'caption='[[2wjh]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2wjh' size='340' side='right'caption='[[2wjh]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2wjh]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_43067 Atcc 43067]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WJH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2WJH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2wjh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_43067 Atcc 43067]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WJH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WJH FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wji\|2wji]], [[2wjg\|2wjg]], [[2wjj\|2wjj]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2wji\|2wji]], [[2wjg\|2wjg]], [[2wjj\|2wjj]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2wjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wjh OCA], [~~http~~://pdbe.org/2wjh PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2wjh RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2wjh PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2wjh ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wjh OCA], [https://pdbe.org/2wjh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wjh RCSB], [https://www.ebi.ac.uk/pdbsum/2wjh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wjh ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/FEOB_METJA FEOB_METJA]] Probable GTP-driven transporter of Fe(2+) ion (By similarity).	+	[[https://www.uniprot.org/uniprot/FEOB_METJA FEOB_METJA]] Probable GTP-driven transporter of Fe(2+) ion (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 08:48, 1 July 2020

2020-07-01T08:48:50Z

←Older revision		Revision as of 08:48, 1 July 2020
Line 1:		Line 1:

	==Structure and function of the FeoB G-domain from Methanococcus jannaschii==		==Structure and function of the FeoB G-domain from Methanococcus jannaschii==
-	<StructureSection load='2wjh' size='340' side='right' caption='[[2wjh]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='2wjh' size='340' side='right'caption='[[2wjh]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2wjh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43067 Atcc 43067]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WJH OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2WJH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2wjh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43067 Atcc 43067]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WJH OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2WJH FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wji\|2wji]], [[2wjg\|2wjg]], [[2wjj\|2wjj]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wji\|2wji]], [[2wjg\|2wjg]], [[2wjj\|2wjj]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2wjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wjh OCA], [http://pdbe.org/2wjh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wjh RCSB], [http://www.ebi.ac.uk/pdbsum/2wjh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2wjh ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2wjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wjh OCA], [http://pdbe.org/2wjh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wjh RCSB], [http://www.ebi.ac.uk/pdbsum/2wjh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2wjh ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 43067]]		[[Category: Atcc 43067]]
		+	[[Category: Large Structures]]
	[[Category: Herrmann, C]]		[[Category: Herrmann, C]]
	[[Category: Koester, S]]		[[Category: Koester, S]]

OCA at 09:33, 26 September 2018

2018-09-26T09:33:27Z

←Older revision		Revision as of 09:33, 26 September 2018
Line 1:		Line 1:
-	==~~STRUCTURE AND FUNCTION OF THE FEOB~~ G-~~DOMAIN FROM METHANOCOCCUS JANNASCHII~~==	+
		+	==Structure and function of the FeoB G-domain from Methanococcus jannaschii==
	<StructureSection load='2wjh' size='340' side='right' caption='[[2wjh]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2wjh' size='340' side='right' caption='[[2wjh]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wji\|2wji]], [[2wjg\|2wjg]], [[2wjj\|2wjj]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wji\|2wji]], [[2wjg\|2wjg]], [[2wjj\|2wjj]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wjh OCA], [http://pdbe.org/2wjh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wjh RCSB], [http://www.ebi.ac.uk/pdbsum/2wjh PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wjh OCA], [http://pdbe.org/2wjh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wjh RCSB], [http://www.ebi.ac.uk/pdbsum/2wjh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2wjh ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wj/2wjh_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wj/2wjh_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 12:01, 9 February 2016

2016-02-09T12:01:11Z

←Older revision		Revision as of 12:01, 9 February 2016
Line 2:		Line 2:
	<StructureSection load='2wjh' size='340' side='right' caption='[[2wjh]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2wjh' size='340' side='right' caption='[[2wjh]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2wjh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Methanocaldococcus_jannaschii Methanocaldococcus jannaschii~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WJH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WJH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2wjh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43067 Atcc 43067]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WJH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WJH FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wji\|2wji]], [[2wjg\|2wjg]], [[2wjj\|2wjj]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wji\|2wji]], [[2wjg\|2wjg]], [[2wjj\|2wjj]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wjh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wjh RCSB], [http://www.ebi.ac.uk/pdbsum/2wjh PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wjh OCA], [http://pdbe.org/2wjh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wjh RCSB], [http://www.ebi.ac.uk/pdbsum/2wjh PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wjh ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2wjh" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Methanocaldococcus jannaschii~~]]	+	[[Category: Atcc 43067]]
	[[Category: Herrmann, C]]		[[Category: Herrmann, C]]
	[[Category: Koester, S]]		[[Category: Koester, S]]

OCA at 06:40, 25 December 2014

2014-12-25T06:40:59Z

←Older revision		Revision as of 06:40, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2wjh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WJH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WJH FirstGlance]. <br>		<table><tr><td colspan='2'>[[2wjh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WJH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WJH FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wji\|2wji]], [[2wjg\|2wjg]], [[2wjj\|2wjj]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wji\|2wji]], [[2wjg\|2wjg]], [[2wjj\|2wjj]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wjh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wjh RCSB], [http://www.ebi.ac.uk/pdbsum/2wjh PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wjh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wjh RCSB], [http://www.ebi.ac.uk/pdbsum/2wjh PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/FEOB_METJA FEOB_METJA]] Probable GTP-driven transporter of Fe(2+) ion (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Methanocaldococcus jannaschii]]		[[Category: Methanocaldococcus jannaschii]]
-	[[Category: Herrmann, C.]]	+	[[Category: Herrmann, C]]
-	[[Category: Koester, S.]]	+	[[Category: Koester, S]]
-	[[Category: Kuehlbrandt, W.]]	+	[[Category: Kuehlbrandt, W]]
-	[[Category: Wehner, M.]]	+	[[Category: Wehner, M]]
-	[[Category: Yildiz, O.]]	+	[[Category: Yildiz, O]]
	[[Category: Cell membrane]]		[[Category: Cell membrane]]
	[[Category: Ferrous iron transport]]		[[Category: Ferrous iron transport]]

OCA at 04:22, 3 October 2014

2014-10-03T04:22:13Z

←Older revision		Revision as of 04:22, 3 October 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_2wjh\| PDB=2wjh \| SCENE= }}~~	+	==STRUCTURE AND FUNCTION OF THE FEOB G-DOMAIN FROM METHANOCOCCUS JANNASCHII==
-	===STRUCTURE AND FUNCTION OF THE FEOB G-DOMAIN FROM METHANOCOCCUS JANNASCHII===	+	<StructureSection load='2wjh' size='340' side='right' caption='[[2wjh]], [[Resolution\|resolution]] 2.10Å' scene=''>
-	~~{{ABSTRACT_PUBMED_19615379}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2wjh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WJH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WJH FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wji\|2wji]], [[2wjg\|2wjg]], [[2wjj\|2wjj]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wjh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wjh RCSB], [http://www.ebi.ac.uk/pdbsum/2wjh PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wj/2wjh_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	FeoB in bacteria and archaea is involved in the uptake of ferrous iron (Fe(2+)), an important cofactor in biological electron transfer and catalysis. Unlike any other known prokaryotic membrane protein, FeoB contains a GTP-binding domain at its N-terminus. We determined high-resolution X-ray structures of the FeoB G-domain from Methanococcus jannaschii with and without bound GDP or Mg(2+)-GppNHp. The G-domain forms the same dimer in all three structures, with the nucleotide-binding pockets at the dimer interface, as in the ATP-binding domain of ABC transporters. The G-domain follows the typical fold of nucleotide-binding proteins, with a beta-strand inserted in switch I that becomes partially disordered upon GTP binding. Switch II does not contact the nucleotide directly and does not change its conformation in response to the bound nucleotide. Release of the nucleotide causes a rearrangement of loop L6, which we identified as the G5 region of FeoB. Together with the C-terminal helix, this loop may transmit the information about the nucleotide-bound state from the G-domain to the transmembrane region of FeoB.

-	~~==Function==~~	+	Structure and function of the FeoB G-domain from Methanococcus jannaschii.,Koster S, Wehner M, Herrmann C, Kuhlbrandt W, Yildiz O J Mol Biol. 2009 Sep 18;392(2):405-19. Epub 2009 Jul 15. PMID:19615379<ref>PMID:19615379</ref>
-	~~[[http://www~~.~~uniprot~~.~~org/uniprot/FEOB_METJA FEOB_METJA]] Probable GTP-driven transporter of Fe~~(2~~+) ion (By similarity~~).	+

-	~~==About this Structure==~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[2wjh]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2WJH OCA].~~	+	</div>
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	~~<ref group="xtra">PMID:019615379</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Methanocaldococcus jannaschii]]		[[Category: Methanocaldococcus jannaschii]]
	[[Category: Herrmann, C.]]		[[Category: Herrmann, C.]]

OCA at 02:25, 4 April 2013

2013-04-04T02:25:03Z

←Older revision		Revision as of 02:25, 4 April 2013
Line 1:		Line 1:
-	[[Image:2wjh.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_2wjh", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2wjh\| PDB=2wjh \| SCENE= }}		{{STRUCTURE_2wjh\| PDB=2wjh \| SCENE= }}
-
	===STRUCTURE AND FUNCTION OF THE FEOB G-DOMAIN FROM METHANOCOCCUS JANNASCHII===		===STRUCTURE AND FUNCTION OF THE FEOB G-DOMAIN FROM METHANOCOCCUS JANNASCHII===
		+	{{ABSTRACT_PUBMED_19615379}}

-		+	==Function==
-	~~<!--~~	+	[[http://www.uniprot.org/uniprot/FEOB_METJA FEOB_METJA]] Probable GTP-driven transporter of Fe(2+) ion (By similarity).
-	~~The line below this paragraph, {{ABSTRACT_PUBMED_19615379}}, adds the Publication Abstract to the page~~	+
-	~~(as it appears on PubMed at~~ http://www.~~pubmed~~.~~gov~~)~~, where 19615379 is the PubMed ID number~~.	+
-	~~-->~~	+
-	~~{{ABSTRACT_PUBMED_19615379}}~~	+

	==About this Structure==		==About this Structure==
Line 22:		Line 10:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:019615379</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019615379</ref><references group="xtra"/><references/>
	[[Category: Methanocaldococcus jannaschii]]		[[Category: Methanocaldococcus jannaschii]]
	[[Category: Herrmann, C.]]		[[Category: Herrmann, C.]]
Line 29:		Line 17:
	[[Category: Wehner, M.]]		[[Category: Wehner, M.]]
	[[Category: Yildiz, O.]]		[[Category: Yildiz, O.]]
		+	[[Category: Cell membrane]]
		+	[[Category: Ferrous iron transport]]
		+	[[Category: Gnbp]]
		+	[[Category: Gtp-binding]]
		+	[[Category: Ion transport]]
		+	[[Category: Iron]]
		+	[[Category: Iron transport]]
		+	[[Category: Membrane]]
		+	[[Category: Membrane g-protein]]
		+	[[Category: Metal transport]]
		+	[[Category: Nucleotide binding motif]]
		+	[[Category: Nucleotide-binding]]
		+	[[Category: Transmembrane]]
		+	[[Category: Transport]]

OCA: Protected "2wjh" [edit=sysop:move=sysop]

2011-05-25T05:55:23Z

Protected "2wjh" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:55, 25 May 2011

OCA at 05:55, 25 May 2011

2011-05-25T05:55:15Z

←Older revision		Revision as of 05:55, 25 May 2011
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:2wjh.png\|left\|200px]]

-	The ~~entry 2wjh~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_2wjh", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_2wjh\| PDB=2wjh \| SCENE= }}

-	~~Authors: Koester, S., Wehner, M., Herrmann, C., Kuehlbrandt, W., Yildiz, O.~~	+	===STRUCTURE AND FUNCTION OF THE FEOB G-DOMAIN FROM METHANOCOCCUS JANNASCHII===

-	Description: Structure and function of the FeoB G-domain from Methanococcus jannaschii

-	~~''Page seeded by~~ [http://oca.weizmann.ac.il/oca OCA ] ~~on Wed Jul 8 09~~:10:~~33 2009''~~	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_19615379}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 19615379 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_19615379}}
		+
		+	==About this Structure==
		+	[[2wjh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WJH OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:019615379</ref><references group="xtra"/>
		+	[[Category: Methanocaldococcus jannaschii]]
		+	[[Category: Herrmann, C.]]
		+	[[Category: Koester, S.]]
		+	[[Category: Kuehlbrandt, W.]]
		+	[[Category: Wehner, M.]]
		+	[[Category: Yildiz, O.]]