2xbo - Revision history

OCA at 10:24, 9 May 2024

2024-05-09T10:24:15Z

←Older revision		Revision as of 10:24, 9 May 2024
Line 3:		Line 3:
	<StructureSection load='2xbo' size='340' side='right'caption='[[2xbo]], [[Resolution\|resolution]] 4.00Å' scene=''>		<StructureSection load='2xbo' size='340' side='right'caption='[[2xbo]], [[Resolution\|resolution]] 4.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2xbo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Equine_rhinitis_a_virus~~ Equine rhinitis a virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XBO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XBO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2xbo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Equine_rhinitis_A_virus Equine rhinitis A virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XBO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XBO FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=GLC:ALPHA~~-~~D-GLUCOSE'>GLC</scene>~~, ~~<scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 4Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~SIA~~:O-~~SIALIC+ACID~~'>~~SIA~~</scene><~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900025:3-sialyl-alpha-lactose'>PRD_900025</scene>, <scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>
-	<~~tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b~~></td><~~td class~~=~~"sblockDat"><div style~~=~~'overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[2wff\|2wff]], [[2ws9\|2ws9]]~~</~~div~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xbo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xbo OCA], [https://pdbe.org/2xbo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xbo RCSB], [https://www.ebi.ac.uk/pdbsum/2xbo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xbo ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xbo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xbo OCA], [https://pdbe.org/2xbo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xbo RCSB], [https://www.ebi.ac.uk/pdbsum/2xbo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xbo ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/B9VV85_9PICO B9VV85_9PICO]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Equine rhinitis a virus]]	+	[[Category: Equine rhinitis A virus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Fry~~, E E~~]]	+	[[Category: Fry EE]]
-	[[Category: Harlos, K]]	+	[[Category: Harlos K]]
-	[[Category: Rowlands~~, D J~~]]	+	[[Category: Rowlands DJ]]
-	[[Category: Stuart~~, D I~~]]	+	[[Category: Stuart DI]]
-	[[Category: Tuthill~~, T J~~]]	+	[[Category: Tuthill TJ]]
-	[[Category: Walter~~, T S]]~~	+	[[Category: Walter TS]]
-	~~[[Category: Capsid]]~~	+
-	~~[[Category: Virus~~]]	+

OCA at 10:49, 13 April 2022

2022-04-13T10:49:20Z

←Older revision		Revision as of 10:49, 13 April 2022
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	<StructureSection load='2xbo' size='340' side='right'caption='[[2xbo]], [[Resolution\|resolution]] 4.00Å' scene=''>		<StructureSection load='2xbo' size='340' side='right'caption='[[2xbo]], [[Resolution\|resolution]] 4.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2xbo]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Equine_rhinitis_a_virus Equine rhinitis a virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XBO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2XBO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2xbo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Equine_rhinitis_a_virus Equine rhinitis a virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XBO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XBO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=~~GAL~~:~~BETA~~-D-~~GALACTOSE~~'>~~GAL~~</scene>, <scene name='pdbligand=~~GLC~~:~~ALPHA~~-D-~~GLUCOSE~~'>~~GLC~~</scene>, <scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wff\|2wff]], [[2ws9\|2ws9]]</td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2xbo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xbo OCA], [~~http~~://pdbe.org/2xbo PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2xbo RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2xbo PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2xbo ProSAT]</span></td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2wff\|2wff]], [[2ws9\|2ws9]]</div></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xbo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xbo OCA], [https://pdbe.org/2xbo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xbo RCSB], [https://www.ebi.ac.uk/pdbsum/2xbo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xbo ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 15:09, 8 July 2020

2020-07-08T15:09:44Z

←Older revision		Revision as of 15:09, 8 July 2020
Line 1:		Line 1:

	==Equine Rhinitis A Virus in Complex with its Sialic Acid Receptor==		==Equine Rhinitis A Virus in Complex with its Sialic Acid Receptor==
-	<StructureSection load='2xbo' size='340' side='right' caption='[[2xbo]], [[Resolution\|resolution]] 4.00Å' scene=''>	+	<StructureSection load='2xbo' size='340' side='right'caption='[[2xbo]], [[Resolution\|resolution]] 4.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2xbo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Equine_rhinitis_a_virus Equine rhinitis a virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XBO OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2XBO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2xbo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Equine_rhinitis_a_virus Equine rhinitis a virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XBO OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2XBO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wff\|2wff]], [[2ws9\|2ws9]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wff\|2wff]], [[2ws9\|2ws9]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2xbo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xbo OCA], [http://pdbe.org/2xbo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2xbo RCSB], [http://www.ebi.ac.uk/pdbsum/2xbo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2xbo ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2xbo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xbo OCA], [http://pdbe.org/2xbo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2xbo RCSB], [http://www.ebi.ac.uk/pdbsum/2xbo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2xbo ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Equine rhinitis a virus]]		[[Category: Equine rhinitis a virus]]
		+	[[Category: Large Structures]]
	[[Category: Fry, E E]]		[[Category: Fry, E E]]
	[[Category: Harlos, K]]		[[Category: Harlos, K]]

OCA at 09:29, 3 October 2018

2018-10-03T09:29:02Z

←Older revision		Revision as of 09:29, 3 October 2018
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2xbo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Equine_rhinitis_a_virus Equine rhinitis a virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XBO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2XBO FirstGlance]. <br>		<table><tr><td colspan='2'>[[2xbo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Equine_rhinitis_a_virus Equine rhinitis a virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XBO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2XBO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~GLC~~:~~ALPHA~~-D-~~GLUCOSE~~'>~~GLC~~</scene>, <scene name='pdbligand=~~GAL~~:~~BETA~~-D-~~GALACTOSE~~'>~~GAL~~</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>	+
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wff\|2wff]], [[2ws9\|2ws9]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wff\|2wff]], [[2ws9\|2ws9]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xbo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xbo OCA], [http://pdbe.org/2xbo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2xbo RCSB], [http://www.ebi.ac.uk/pdbsum/2xbo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2xbo ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xbo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xbo OCA], [http://pdbe.org/2xbo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2xbo RCSB], [http://www.ebi.ac.uk/pdbsum/2xbo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2xbo ProSAT]</span></td></tr>
Line 13:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xb/2xbo_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xb/2xbo_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 18:50, 5 August 2016

2016-08-05T18:50:13Z

←Older revision		Revision as of 18:50, 5 August 2016
Line 1:		Line 1:
		+
	==Equine Rhinitis A Virus in Complex with its Sialic Acid Receptor==		==Equine Rhinitis A Virus in Complex with its Sialic Acid Receptor==
	<StructureSection load='2xbo' size='340' side='right' caption='[[2xbo]], [[Resolution\|resolution]] 4.00Å' scene=''>		<StructureSection load='2xbo' size='340' side='right' caption='[[2xbo]], [[Resolution\|resolution]] 4.00Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wff\|2wff]], [[2ws9\|2ws9]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wff\|2wff]], [[2ws9\|2ws9]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xbo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xbo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2xbo RCSB], [http://www.ebi.ac.uk/pdbsum/2xbo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xbo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xbo OCA], [http://pdbe.org/2xbo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2xbo RCSB], [http://www.ebi.ac.uk/pdbsum/2xbo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2xbo ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2xbo ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 26:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2xbo" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 21:41, 3 January 2015

2015-01-03T21:41:07Z

←Older revision		Revision as of 21:41, 3 January 2015
Line 2:		Line 2:
	<StructureSection load='2xbo' size='340' side='right' caption='[[2xbo]], [[Resolution\|resolution]] 4.00Å' scene=''>		<StructureSection load='2xbo' size='340' side='right' caption='[[2xbo]], [[Resolution\|resolution]] 4.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2xbo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Equine_rhinitis_a_virus Equine rhinitis a virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XBO OCA]. <br>	+	<table><tr><td colspan='2'>[[2xbo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Equine_rhinitis_a_virus Equine rhinitis a virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XBO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2XBO FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wff\|2wff]], [[2ws9\|2ws9]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wff\|2wff]], [[2ws9\|2ws9]]</td></tr>
-	<tr~~><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class~~='~~plainlinks~~'~~>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xbo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xbo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2xbo RCSB], [http://www.ebi.ac.uk/pdbsum/2xbo PDBsum]</span></td></tr>
-	~~<tr~~><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xbo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xbo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2xbo RCSB], [http://www.ebi.ac.uk/pdbsum/2xbo PDBsum]</span></td></tr>	+	</table>
-	<table>	+
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 24:
	Crystal structure of equine rhinitis A virus in complex with its sialic acid receptor.,Fry EE, Tuthill TJ, Harlos K, Walter TS, Rowlands DJ, Stuart DI J Gen Virol. 2010 Aug;91(Pt 8):1971-7. Epub 2010 Apr 28. PMID:20427563<ref>PMID:20427563</ref>		Crystal structure of equine rhinitis A virus in complex with its sialic acid receptor.,Fry EE, Tuthill TJ, Harlos K, Walter TS, Rowlands DJ, Stuart DI J Gen Virol. 2010 Aug;91(Pt 8):1971-7. Epub 2010 Apr 28. PMID:20427563<ref>PMID:20427563</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==
Line 32:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Equine rhinitis a virus]]		[[Category: Equine rhinitis a virus]]
-	[[Category: Fry, E E.]]	+	[[Category: Fry, E E]]
-	[[Category: Harlos, K.]]	+	[[Category: Harlos, K]]
-	[[Category: Rowlands, D J.]]	+	[[Category: Rowlands, D J]]
-	[[Category: Stuart, D I.]]	+	[[Category: Stuart, D I]]
-	[[Category: Tuthill, T J.]]	+	[[Category: Tuthill, T J]]
-	[[Category: Walter, T S.]]	+	[[Category: Walter, T S]]
	[[Category: Capsid]]		[[Category: Capsid]]
	[[Category: Virus]]		[[Category: Virus]]

OCA at 07:38, 14 May 2014

2014-05-14T07:38:21Z

←Older revision		Revision as of 07:38, 14 May 2014
Line 1:		Line 1:
-	[[~~Image:~~2xbo.~~png~~\|~~left~~\|200px]]	+	==Equine Rhinitis A Virus in Complex with its Sialic Acid Receptor==
		+	<StructureSection load='2xbo' size='340' side='right' caption='[[2xbo]], [[Resolution\|resolution]] 4.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2xbo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Equine_rhinitis_a_virus Equine rhinitis a virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XBO OCA]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wff\|2wff]], [[2ws9\|2ws9]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xbo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xbo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2xbo RCSB], [http://www.ebi.ac.uk/pdbsum/2xbo PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xb/2xbo_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Equine rhinitis A virus (ERAV) shares many features with foot-and-mouth disease virus (FMDV) and both are classified within the genus Aphthovirus of the family Picornaviridae. ERAV is used as a surrogate for FMDV research as it does not require high-level biosecurity. In contrast to FMDV, which uses integrins as cellular receptors, the receptor for ERAV has been reported to involve the sugar moiety sialic acid. This study confirmed the importance of sialic acid for cell entry by ERAV and reports the crystal structure of ERAV particles complexed with the receptor analogue 3'-sialyllactose. The receptor is attached to the rim of a capsid pit adjacent to the major immunogenic site and distinct from the sialic acid binding site used by a related picornavirus, the cardiovirus Theiler's murine encephalitis virus. The structure of the major antigenic determinant of the virus, previously identified from antibody escape mutations, is also described as the EF loop of VP1, which forms a hairpin stretching across the capsid surface close to the icosahedral fivefold axis, neighbouring the receptor-binding site, and spanning two protomeric units.

-	~~<!--~~	+	Crystal structure of equine rhinitis A virus in complex with its sialic acid receptor.,Fry EE, Tuthill TJ, Harlos K, Walter TS, Rowlands DJ, Stuart DI J Gen Virol. 2010 Aug;91(Pt 8):1971-7. Epub 2010 Apr 28. PMID:20427563<ref>PMID:20427563</ref>
-	~~The line below this paragraph~~, ~~containing "STRUCTURE_2xbo"~~, ~~creates the "Structure Box" on the page~~.	+
-	~~You may change the PDB parameter~~ (~~which sets the PDB file loaded into the applet~~)	+
-	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~	+
-	~~or leave the SCENE parameter empty for the default display.~~	+
-	-->	+
-	~~{{STRUCTURE_2xbo\| PDB=2xbo \| SCENE= }}~~	+

-	~~===Equine Rhinitis A Virus in Complex with its Sialic Acid Receptor===~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-		+	== References ==
-	~~<!--~~	+	<references/>
-	~~The line below this paragraph~~, ~~{{ABSTRACT_PUBMED_20427563}}, adds~~ the ~~Publication Abstract to the page~~	+	__TOC__
-	~~(as it appears on PubMed at http://www~~.~~pubmed~~.~~gov), where 20427563 is the PubMed ID number~~.	+	</StructureSection>
-	-->	+
-	~~{{ABSTRACT_PUBMED_20427563}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2xbo]] is a 4 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Equine_rhinitis_a_virus Equine rhinitis a virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XBO OCA].~~	+
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:020427563<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Equine rhinitis a virus]]		[[Category: Equine rhinitis a virus]]
	[[Category: Fry, E E.]]		[[Category: Fry, E E.]]

OCA: Protected "2xbo" [edit=sysop:move=sysop]

2012-01-11T05:31:20Z

Protected "2xbo" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:31, 11 January 2012

OCA at 05:31, 11 January 2012

2012-01-11T05:31:18Z

←Older revision		Revision as of 05:31, 11 January 2012
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:2xbo.png\|left\|200px]]
-	[[Image:2xbo.~~jpg~~\|left\|200px]]	+

	<!--		<!--
Line 10:		Line 9:
	{{STRUCTURE_2xbo\| PDB=2xbo \| SCENE= }}		{{STRUCTURE_2xbo\| PDB=2xbo \| SCENE= }}

-	===~~EQUINE RHINITIS~~ A ~~VIRUS IN COMPLEX WITH ITS SIALIC ACID RECEPTOR~~===	+	===Equine Rhinitis A Virus in Complex with its Sialic Acid Receptor===


Line 20:		Line 19:

	==About this Structure==		==About this Structure==
-	~~2XBO~~ is a 4 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Equine_rhinitis_a_virus Equine rhinitis a virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XBO OCA].	+	[[2xbo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Equine_rhinitis_a_virus Equine rhinitis a virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XBO OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20427563~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020427563</ref><references group="xtra"/>
	[[Category: Equine rhinitis a virus]]		[[Category: Equine rhinitis a virus]]
	[[Category: Fry, E E.]]		[[Category: Fry, E E.]]
Line 33:		Line 32:
	[[Category: Capsid]]		[[Category: Capsid]]
	[[Category: Virus]]		[[Category: Virus]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 22 14:42:21 2010''

OCA at 11:33, 22 September 2010

2010-09-22T11:33:23Z

←Older revision		Revision as of 11:33, 22 September 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:2xbo.jpg\|left\|200px]]

-	The ~~entry 2xbo~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_2xbo", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_2xbo\| PDB=2xbo \| SCENE= }}

-	~~Authors: Fry, E.E., Tuthill, T.J., Harlos, K., Walter, T.S., Rowlands, D.J., Stuart, D.I.~~	+	===EQUINE RHINITIS A VIRUS IN COMPLEX WITH ITS SIALIC ACID RECEPTOR===

-	Description: Equine Rhinitis A Virus in Complex with its Sialic Acid Receptor

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Apr 21 09~~:23:57 2010''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_20427563}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 20427563 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_20427563}}
		+
		+	==About this Structure==
		+	2XBO is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Equine_rhinitis_a_virus Equine rhinitis a virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XBO OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:20427563</ref><references group="xtra"/>
		+	[[Category: Equine rhinitis a virus]]
		+	[[Category: Fry, E E.]]
		+	[[Category: Harlos, K.]]
		+	[[Category: Rowlands, D J.]]
		+	[[Category: Stuart, D I.]]
		+	[[Category: Tuthill, T J.]]
		+	[[Category: Walter, T S.]]
		+	[[Category: Capsid]]
		+	[[Category: Virus]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 22 14:42:21 2010''