2y0w - Revision history

OCA: Redirecting to 4v5p

2014-12-10T15:17:29Z

Redirecting to 4v5p

←Older revision		Revision as of 15:17, 10 December 2014
Line 1:		Line 1:
-	~~==THE CRYSTAL STRUCTURE OF EF-TU AND A9C-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME==~~	+	#REDIRECT [[4v5p]] This PDB entry is obsolete and replaced by 4v5p
-	~~<StructureSection load='2y0w' size='340' side='right' caption='~~[[~~2y0w]], [[Resolution\|resolution]] 3.10Å' scene=''>~~	+
-	~~== Structural highlights ==~~	+
-	~~<table><tr><td colspan='2'>[[2y0w~~]] is ~~a 26 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]~~ and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y0W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2Y0W FirstGlance]. <br>	+
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=KIR:KIRROMYCIN'>KIR</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+
-	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=4SU:4-THIOURIDINE-5-MONOPHOSPHATE'>4SU</scene>, <scene name='pdbligand=5MU:5-METHYLURIDINE+5-MONOPHOSPHATE'>5MU</scene>, <scene name='pdbligand=7MG:7N-METHYL-8-HYDROGUANOSINE-5-MONOPHOSPHATE'>7MG</scene>, <scene name='pdbligand=H2U:5,6-DIHYDROURIDINE-5-MONOPHOSPHATE'>H2U</scene>, <scene name='pdbligand=MIA:2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5-MONOPHOSPHATE'>MIA</scene>, <scene name='pdbligand=OMC:O2-METHYLYCYTIDINE-5-MONOPHOSPHATE'>OMC</scene>, <scene name='pdbligand=PSU:PSEUDOURIDINE-5-MONOPHOSPHATE'>PSU</scene></td></tr>	+
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2y0u\|2y0u]], [[2y0v\|2y0v]], [[2y0x\|2y0x]], [[1ibk\|1ibk]], [[1ibl\|1ibl]], [[2uuc\|2uuc]], [[2wdk\|2wdk]], [[2j02\|2j02]], [[1j5e\|1j5e]], [[2wrq\|2wrq]], [[2j00\|2j00]], [[1hnx\|1hnx]], [[2b9o\|2b9o]], [[2x9t\|2x9t]], [[2wh3\|2wh3]], [[2uub\|2uub]], [[1vov\|1vov]], [[1emi\|1emi]], [[2xqd\|2xqd]], [[1pnx\|1pnx]], [[2v46\|2v46]], [[2vqf\|2vqf]], [[2wh1\|2wh1]], [[1n32\|1n32]], [[2wrn\|2wrn]], [[2jl5\|2jl5]], [[2f4v\|2f4v]], [[1twt\|1twt]], [[1qzc\|1qzc]], [[2uxd\|2uxd]], [[1fka\|1fka]], [[1n36\|1n36]], [[1fjg\|1fjg]], [[2uxc\|2uxc]], [[1hnw\|1hnw]], [[1l1u\|1l1u]], [[1hr0\|1hr0]], [[2v48\|2v48]], [[2xuy\|2xuy]], [[2b64\|2b64]], [[1xmq\|1xmq]], [[2b9m\|2b9m]], [[1pn8\|1pn8]], [[2wdg\|2wdg]], [[1xnr\|1xnr]], [[1dv4\|1dv4]], [[1hnz\|1hnz]], [[1rss\|1rss]], [[2wdh\|2wdh]], [[1jgq\|1jgq]], [[1i94\|1i94]], [[2xsy\|2xsy]], [[1i96\|1i96]], [[2uu9\|2uu9]], [[1pn7\|1pn7]], [[1eg0\|1eg0]], [[1ibm\|1ibm]], [[2uxb\|2uxb]], [[2vqe\|2vqe]], [[1g1x\|1g1x]], [[1ha3\|1ha3]], [[2uua\|2uua]], [[1i95\|1i95]], [[1xnq\|1xnq]], [[2xfz\|2xfz]], [[1qd7\|1qd7]], [[1gix\|1gix]], [[1jgo\|1jgo]], [[1jgp\|1jgp]], [[2xg1\|2xg1]], [[2c78\|2c78]], [[2x9r\|2x9r]], [[1n34\|1n34]], [[1n33\|1n33]], [[1pns\|1pns]], [[2jl7\|2jl7]], [[1yl4\|1yl4]], [[2wdm\|2wdm]], [[1xmo\|1xmo]], [[1i97\|1i97]], [[2y17\|2y17]], [[2y12\|2y12]], [[2y19\|2y19]], [[2y13\|2y13]], [[2y16\|2y16]], [[2y0z\|2y0z]], [[2y0y\|2y0y]], [[2y15\|2y15]], [[2y10\|2y10]], [[2y11\|2y11]], [[2y14\|2y14]], [[2y18\|2y18]]</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2y0w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2y0w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2y0w RCSB], [http://www.ebi.ac.uk/pdbsum/2y0w PDBsum]</span></td></tr>	+
-	~~</table>~~	+
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	~~The ribosome converts genetic information into protein~~ by selecting aminoacyl tRNAs whose anticodons base-pair to an mRNA codon. Mutations in the tRNA body can perturb this process and affect fidelity. The Hirsh suppressor is a well-studied tRNA(Trp) harboring a G24A mutation that allows readthrough of UGA stop codons. Here we present crystal structures of the 70S ribosome complexed with EF-Tu and aminoacyl tRNA (native tRNA(Trp), G24A tRNA(Trp) or the miscoding A9C tRNA(Trp)) bound to cognate UGG or near-cognate UGA codons, determined at 3.2-A resolution. The A9C and G24A mutations lead to miscoding by facilitating the distortion of tRNA required for decoding. A9C accomplishes this by increasing tRNA flexibility, whereas G24A allows the formation of an additional hydrogen bond that stabilizes the distortion. Our results also suggest that each native tRNA will adopt a unique conformation when delivered to the ribosome that allows accurate decoding.	+
-		+
-	How mutations in tRNA distant from the anticodon affect the fidelity of decoding.,Schmeing TM, Voorhees RM, Kelley AC, Ramakrishnan V Nat Struct Mol Biol. 2011 Apr;18(4):432-6. Epub 2011 Mar 6. PMID:21378964<ref>PMID:21378964</ref>	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-		+
-	~~==See Also==~~	+
-	*[[Elongation factor\|Elongation factor]]	+
-	*[[Ribosomal protein THX\|Ribosomal protein THX]]	+
-	*[[Ribosome 3D structures\|Ribosome 3D structures]]	+
-	~~== References ==~~	+
-	~~<references/>~~	+
-	~~__TOC__~~	+
-	~~</StructureSection>~~	+
-	~~[[Category: Escherichia coli]]~~	+
-	~~[[Category: Thermus thermophilus]]~~	+
-	~~[[Category: Ramakrishnan, V.]]~~	+
-	~~[[Category: Schmeing, T M.]]~~	+
-	~~[[Category: Voorhees, R M.]]~~	+
-	~~[[Category: Ribosome]]~~	+

OCA at 13:06, 22 October 2014

2014-10-22T13:06:57Z

←Older revision		Revision as of 13:06, 22 October 2014
Line 1:		Line 1:
-	[[~~Image:~~2y0w.~~png~~\|~~left~~\|~~200px~~]]	+	==THE CRYSTAL STRUCTURE OF EF-TU AND A9C-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME==
		+	<StructureSection load='2y0w' size='340' side='right' caption='[[2y0w]], [[Resolution\|resolution]] 3.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2y0w]] is a 26 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y0W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2Y0W FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=KIR:KIRROMYCIN'>KIR</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=4SU:4-THIOURIDINE-5-MONOPHOSPHATE'>4SU</scene>, <scene name='pdbligand=5MU:5-METHYLURIDINE+5-MONOPHOSPHATE'>5MU</scene>, <scene name='pdbligand=7MG:7N-METHYL-8-HYDROGUANOSINE-5-MONOPHOSPHATE'>7MG</scene>, <scene name='pdbligand=H2U:5,6-DIHYDROURIDINE-5-MONOPHOSPHATE'>H2U</scene>, <scene name='pdbligand=MIA:2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5-MONOPHOSPHATE'>MIA</scene>, <scene name='pdbligand=OMC:O2-METHYLYCYTIDINE-5-MONOPHOSPHATE'>OMC</scene>, <scene name='pdbligand=PSU:PSEUDOURIDINE-5-MONOPHOSPHATE'>PSU</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2y0u\|2y0u]], [[2y0v\|2y0v]], [[2y0x\|2y0x]], [[1ibk\|1ibk]], [[1ibl\|1ibl]], [[2uuc\|2uuc]], [[2wdk\|2wdk]], [[2j02\|2j02]], [[1j5e\|1j5e]], [[2wrq\|2wrq]], [[2j00\|2j00]], [[1hnx\|1hnx]], [[2b9o\|2b9o]], [[2x9t\|2x9t]], [[2wh3\|2wh3]], [[2uub\|2uub]], [[1vov\|1vov]], [[1emi\|1emi]], [[2xqd\|2xqd]], [[1pnx\|1pnx]], [[2v46\|2v46]], [[2vqf\|2vqf]], [[2wh1\|2wh1]], [[1n32\|1n32]], [[2wrn\|2wrn]], [[2jl5\|2jl5]], [[2f4v\|2f4v]], [[1twt\|1twt]], [[1qzc\|1qzc]], [[2uxd\|2uxd]], [[1fka\|1fka]], [[1n36\|1n36]], [[1fjg\|1fjg]], [[2uxc\|2uxc]], [[1hnw\|1hnw]], [[1l1u\|1l1u]], [[1hr0\|1hr0]], [[2v48\|2v48]], [[2xuy\|2xuy]], [[2b64\|2b64]], [[1xmq\|1xmq]], [[2b9m\|2b9m]], [[1pn8\|1pn8]], [[2wdg\|2wdg]], [[1xnr\|1xnr]], [[1dv4\|1dv4]], [[1hnz\|1hnz]], [[1rss\|1rss]], [[2wdh\|2wdh]], [[1jgq\|1jgq]], [[1i94\|1i94]], [[2xsy\|2xsy]], [[1i96\|1i96]], [[2uu9\|2uu9]], [[1pn7\|1pn7]], [[1eg0\|1eg0]], [[1ibm\|1ibm]], [[2uxb\|2uxb]], [[2vqe\|2vqe]], [[1g1x\|1g1x]], [[1ha3\|1ha3]], [[2uua\|2uua]], [[1i95\|1i95]], [[1xnq\|1xnq]], [[2xfz\|2xfz]], [[1qd7\|1qd7]], [[1gix\|1gix]], [[1jgo\|1jgo]], [[1jgp\|1jgp]], [[2xg1\|2xg1]], [[2c78\|2c78]], [[2x9r\|2x9r]], [[1n34\|1n34]], [[1n33\|1n33]], [[1pns\|1pns]], [[2jl7\|2jl7]], [[1yl4\|1yl4]], [[2wdm\|2wdm]], [[1xmo\|1xmo]], [[1i97\|1i97]], [[2y17\|2y17]], [[2y12\|2y12]], [[2y19\|2y19]], [[2y13\|2y13]], [[2y16\|2y16]], [[2y0z\|2y0z]], [[2y0y\|2y0y]], [[2y15\|2y15]], [[2y10\|2y10]], [[2y11\|2y11]], [[2y14\|2y14]], [[2y18\|2y18]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2y0w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2y0w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2y0w RCSB], [http://www.ebi.ac.uk/pdbsum/2y0w PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The ribosome converts genetic information into protein by selecting aminoacyl tRNAs whose anticodons base-pair to an mRNA codon. Mutations in the tRNA body can perturb this process and affect fidelity. The Hirsh suppressor is a well-studied tRNA(Trp) harboring a G24A mutation that allows readthrough of UGA stop codons. Here we present crystal structures of the 70S ribosome complexed with EF-Tu and aminoacyl tRNA (native tRNA(Trp), G24A tRNA(Trp) or the miscoding A9C tRNA(Trp)) bound to cognate UGG or near-cognate UGA codons, determined at 3.2-A resolution. The A9C and G24A mutations lead to miscoding by facilitating the distortion of tRNA required for decoding. A9C accomplishes this by increasing tRNA flexibility, whereas G24A allows the formation of an additional hydrogen bond that stabilizes the distortion. Our results also suggest that each native tRNA will adopt a unique conformation when delivered to the ribosome that allows accurate decoding.

-	~~{{STRUCTURE_2y0w\| PDB=2y0w \| SCENE= }}~~	+	How mutations in tRNA distant from the anticodon affect the fidelity of decoding.,Schmeing TM, Voorhees RM, Kelley AC, Ramakrishnan V Nat Struct Mol Biol. 2011 Apr;18(4):432-6. Epub 2011 Mar 6. PMID:21378964<ref>PMID:21378964</ref>

-	~~===THE CRYSTAL STRUCTURE OF EF-TU AND A9C-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_21378964}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2y0w]] is~~ a ~~26 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Escherichia_coli Escherichia coli] and [http://en~~.~~wikipedia.org~~/~~wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y0W OCA].~~	+

	==See Also==		==See Also==
	*[[Elongation factor\|Elongation factor]]		*[[Elongation factor\|Elongation factor]]
-	*[[Ribosomal protein S10\|Ribosomal protein S10]]
-	*[[Ribosomal protein S11\|Ribosomal protein S11]]
-	*[[Ribosomal protein S12\|Ribosomal protein S12]]
-	*[[Ribosomal protein S13\|Ribosomal protein S13]]
-	*[[Ribosomal protein S14\|Ribosomal protein S14]]
-	*[[Ribosomal protein S15\|Ribosomal protein S15]]
-	*[[Ribosomal protein S16\|Ribosomal protein S16]]
-	*[[Ribosomal protein S17\|Ribosomal protein S17]]
-	*[[Ribosomal protein S18\|Ribosomal protein S18]]
-	*[[Ribosomal protein S19\|Ribosomal protein S19]]
-	*[[Ribosomal protein S2\|Ribosomal protein S2]]
-	*[[Ribosomal protein S20\|Ribosomal protein S20]]
-	*[[Ribosomal protein S3\|Ribosomal protein S3]]
-	*[[Ribosomal protein S4\|Ribosomal protein S4]]
-	*[[Ribosomal protein S5\|Ribosomal protein S5]]
-	*[[Ribosomal protein S6\|Ribosomal protein S6]]
-	*[[Ribosomal protein S7\|Ribosomal protein S7]]
-	*[[Ribosomal protein S8\|Ribosomal protein S8]]
-	*[[Ribosomal protein S9\|Ribosomal protein S9]]
	*[[Ribosomal protein THX\|Ribosomal protein THX]]		*[[Ribosomal protein THX\|Ribosomal protein THX]]
-		+	*[[Ribosome 3D structures\|Ribosome 3D structures]]
-	==~~Reference~~==	+	== References ==
-	<~~ref group="xtra">PMID:021378964<~~/~~ref~~><~~references group="xtra"~~/>	+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]

OCA at 08:01, 20 October 2012

2012-10-20T08:01:30Z

←Older revision		Revision as of 08:01, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[2y0w]] is a 26 chain structure of [[Ribosomal protein S10]], [[Ribosomal protein S11]], [[Ribosomal protein S12]], [[Ribosomal protein S13]], [[Ribosomal protein S14]], [[Ribosomal protein S15]], [[Ribosomal protein S16]], [[Ribosomal protein S17]], [[Ribosomal protein S18]], [[Ribosomal protein S19]], [[Ribosomal protein S2]], [[Ribosomal protein S20]], [[Ribosomal protein S3]], [[Ribosomal protein S4]], [[Ribosomal protein S5]], [[Ribosomal protein S6]], [[Ribosomal protein S7]], [[Ribosomal protein S8]], [[Ribosomal protein S9]] and [[Ribosomal protein THX]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y0W OCA].	+	[[2y0w]] is a 26 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y0W OCA].

	==See Also==		==See Also==
		+	*[[Elongation factor\|Elongation factor]]
	*[[Ribosomal protein S10\|Ribosomal protein S10]]		*[[Ribosomal protein S10\|Ribosomal protein S10]]
	*[[Ribosomal protein S11\|Ribosomal protein S11]]		*[[Ribosomal protein S11\|Ribosomal protein S11]]

OCA at 18:13, 25 July 2012

2012-07-25T18:13:37Z

←Older revision		Revision as of 18:13, 25 July 2012
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	[[Image:2y0w.png\|left\|200px]]		[[Image:2y0w.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_2y0w\| PDB=2y0w \| SCENE= }}		{{STRUCTURE_2y0w\| PDB=2y0w \| SCENE= }}

	===THE CRYSTAL STRUCTURE OF EF-TU AND A9C-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME===		===THE CRYSTAL STRUCTURE OF EF-TU AND A9C-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME===

-
-	<!--
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	{{ABSTRACT_PUBMED_21378964}}		{{ABSTRACT_PUBMED_21378964}}

	==About this Structure==		==About this Structure==
-	[[2y0w]] is a 26 chain structure of [[Ribosomal protein S10]], [[Ribosomal protein S11]], [[Ribosomal protein S12]], [[Ribosomal protein S13]], [[Ribosomal protein S14]], [[Ribosomal protein S15]], [[Ribosomal protein S16]], [[Ribosomal protein S17]], [[Ribosomal protein S18]], [[Ribosomal protein S19]], [[Ribosomal protein S2]], [[Ribosomal protein S20]], [[Ribosomal protein S3]], [[Ribosomal protein S4]], [[Ribosomal protein S5]], [[Ribosomal protein S6]], [[Ribosomal protein S7]], [[Ribosomal protein S8]] ~~and~~ [[Ribosomal protein S9]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y0W OCA].	+	[[2y0w]] is a 26 chain structure of [[Ribosomal protein S10]], [[Ribosomal protein S11]], [[Ribosomal protein S12]], [[Ribosomal protein S13]], [[Ribosomal protein S14]], [[Ribosomal protein S15]], [[Ribosomal protein S16]], [[Ribosomal protein S17]], [[Ribosomal protein S18]], [[Ribosomal protein S19]], [[Ribosomal protein S2]], [[Ribosomal protein S20]], [[Ribosomal protein S3]], [[Ribosomal protein S4]], [[Ribosomal protein S5]], [[Ribosomal protein S6]], [[Ribosomal protein S7]], [[Ribosomal protein S8]], [[Ribosomal protein S9]] and [[Ribosomal protein THX]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y0W OCA].

	==See Also==		==See Also==
-	*[[Ribosomal protein S10]]	+	*[[Ribosomal protein S10\|Ribosomal protein S10]]
-	*[[Ribosomal protein S11]]	+	*[[Ribosomal protein S11\|Ribosomal protein S11]]
-	*[[Ribosomal protein S12]]	+	*[[Ribosomal protein S12\|Ribosomal protein S12]]
-	*[[Ribosomal protein S13]]	+	*[[Ribosomal protein S13\|Ribosomal protein S13]]
-	*[[Ribosomal protein S14]]	+	*[[Ribosomal protein S14\|Ribosomal protein S14]]
-	*[[Ribosomal protein S15]]	+	*[[Ribosomal protein S15\|Ribosomal protein S15]]
-	*[[Ribosomal protein S16]]	+	*[[Ribosomal protein S16\|Ribosomal protein S16]]
-	*[[Ribosomal protein S17]]	+	*[[Ribosomal protein S17\|Ribosomal protein S17]]
-	*[[Ribosomal protein S18]]	+	*[[Ribosomal protein S18\|Ribosomal protein S18]]
-	*[[Ribosomal protein S19]]	+	*[[Ribosomal protein S19\|Ribosomal protein S19]]
-	*[[Ribosomal protein S2]]	+	*[[Ribosomal protein S2\|Ribosomal protein S2]]
-	*[[Ribosomal protein S20]]	+	*[[Ribosomal protein S20\|Ribosomal protein S20]]
-	*[[Ribosomal protein S3]]	+	*[[Ribosomal protein S3\|Ribosomal protein S3]]
-	*[[Ribosomal protein S4]]	+	*[[Ribosomal protein S4\|Ribosomal protein S4]]
-	*[[Ribosomal protein S5]]	+	*[[Ribosomal protein S5\|Ribosomal protein S5]]
-	*[[Ribosomal protein S6]]	+	*[[Ribosomal protein S6\|Ribosomal protein S6]]
-	*[[Ribosomal protein S7]]	+	*[[Ribosomal protein S7\|Ribosomal protein S7]]
-	*[[Ribosomal protein S8]]	+	*[[Ribosomal protein S8\|Ribosomal protein S8]]
-	*[[Ribosomal protein S9]]	+	*[[Ribosomal protein S9\|Ribosomal protein S9]]
		+	*[[Ribosomal protein THX\|Ribosomal protein THX]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~21378964~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:021378964</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
Line 49:		Line 39:
	[[Category: Schmeing, T M.]]		[[Category: Schmeing, T M.]]
	[[Category: Voorhees, R M.]]		[[Category: Voorhees, R M.]]
		+	[[Category: Ribosome]]

OCA at 06:34, 27 April 2011

2011-04-27T06:34:57Z

←Older revision		Revision as of 06:34, 27 April 2011
Line 1:		Line 1:
-	[[Image:2y0w.~~jpg~~\|left\|200px]]	+	[[Image:2y0w.png\|left\|200px]]

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	===THE CRYSTAL STRUCTURE OF EF-TU AND A9C-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME===		===THE CRYSTAL STRUCTURE OF EF-TU AND A9C-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_21378964}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 21378964 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_21378964}}

	==About this Structure==		==About this Structure==
-	[[2y0w]] is a 26 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y0W OCA].	+	[[2y0w]] is a 26 chain structure of [[Ribosomal protein S10]], [[Ribosomal protein S11]], [[Ribosomal protein S12]], [[Ribosomal protein S13]], [[Ribosomal protein S14]], [[Ribosomal protein S15]], [[Ribosomal protein S16]], [[Ribosomal protein S17]], [[Ribosomal protein S18]], [[Ribosomal protein S19]], [[Ribosomal protein S2]], [[Ribosomal protein S20]], [[Ribosomal protein S3]], [[Ribosomal protein S4]], [[Ribosomal protein S5]], [[Ribosomal protein S6]], [[Ribosomal protein S7]], [[Ribosomal protein S8]] and [[Ribosomal protein S9]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y0W OCA].
		+
		+	==See Also==
		+	*[[Ribosomal protein S10]]
		+	*[[Ribosomal protein S11]]
		+	*[[Ribosomal protein S12]]
		+	*[[Ribosomal protein S13]]
		+	*[[Ribosomal protein S14]]
		+	*[[Ribosomal protein S15]]
		+	*[[Ribosomal protein S16]]
		+	*[[Ribosomal protein S17]]
		+	*[[Ribosomal protein S18]]
		+	*[[Ribosomal protein S19]]
		+	*[[Ribosomal protein S2]]
		+	*[[Ribosomal protein S20]]
		+	*[[Ribosomal protein S3]]
		+	*[[Ribosomal protein S4]]
		+	*[[Ribosomal protein S5]]
		+	*[[Ribosomal protein S6]]
		+	*[[Ribosomal protein S7]]
		+	*[[Ribosomal protein S8]]
		+	*[[Ribosomal protein S9]]
		+
		+	==Reference==
		+	<ref group="xtra">PMID:21378964</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]

OCA at 06:29, 9 March 2011

2011-03-09T06:29:54Z

←Older revision		Revision as of 06:29, 9 March 2011
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-	~~'''Unreleased structure'''~~	+	[[Image:2y0w.jpg\|left\|200px]]

-	The ~~entry 2y0w~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_2y0w", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_2y0w\| PDB=2y0w \| SCENE= }}

-	~~Authors: Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.~~	+	===THE CRYSTAL STRUCTURE OF EF-TU AND A9C-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME===

-	~~Description: The crystal~~ structure ~~of EF-Tu~~ and ~~A9C~~-~~tRNA-Trp bound to a near-cognate codon on the 70S ribosome~~	+
		+	==About this Structure==
		+	[[2y0w]] is a 26 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y0W OCA].
		+	[[Category: Escherichia coli]]
		+	[[Category: Thermus thermophilus]]
		+	[[Category: Ramakrishnan, V.]]
		+	[[Category: Schmeing, T M.]]
		+	[[Category: Voorhees, R M.]]

OCA at 09:28, 23 February 2011

2011-02-23T09:28:42Z

←Older revision		Revision as of 09:28, 23 February 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 2y0w is ON HOLD	+	The entry 2y0w is ON HOLD until Paper Publication

	Authors: Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.		Authors: Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.

	Description: The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near-cognate codon on the 70S ribosome		Description: The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near-cognate codon on the 70S ribosome

OCA: Protected "2y0w" [edit=sysop:move=sysop]

2010-12-29T18:05:38Z

Protected "2y0w" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:05, 29 December 2010

OCA: New page: '''Unreleased structure''' The entry 2y0w is ON HOLD Authors: Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V. Description: The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a n...

2010-12-29T18:05:38Z

New page: '''Unreleased structure''' The entry 2y0w is ON HOLD Authors: Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V. Description: The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a n...

New page

'''Unreleased structure'''

The entry 2y0w is ON HOLD

Authors: Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.

Description: The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near-cognate codon on the 70S ribosome