2zbj - Revision history

OCA at 13:30, 1 November 2023

2023-11-01T13:30:06Z

←Older revision		Revision as of 13:30, 1 November 2023
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	<StructureSection load='2zbj' size='340' side='right'caption='[[2zbj]], [[Resolution\|resolution]] 2.05Å' scene=''>		<StructureSection load='2zbj' size='340' side='right'caption='[[2zbj]], [[Resolution\|resolution]] 2.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zbj]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Dioclea_rostrata Dioclea rostrata~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2ZBJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zbj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Macropsychanthus_bicolor Macropsychanthus bicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZBJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.05Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2zbj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zbj OCA], [~~http~~://pdbe.org/2zbj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2zbj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2zbj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2zbj ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zbj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zbj OCA], [https://pdbe.org/2zbj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zbj RCSB], [https://www.ebi.ac.uk/pdbsum/2zbj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zbj ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/LECA_DIORO LECA_DIORO]] D-mannose/D-glucose-binding lectin. Induces histamine release in mast cells from hamster and rat. Induces lymphocyte proliferation and IFNG production.<ref>PMID:18682294</ref> <ref>PMID:1398779</ref> <ref>PMID:7524287</ref> <ref>PMID:8891754</ref> <ref>PMID:9575151</ref> <ref>PMID:10747944</ref>	+	[https://www.uniprot.org/uniprot/LECA_DIORO LECA_DIORO] D-mannose/D-glucose-binding lectin. Induces histamine release in mast cells from hamster and rat. Induces lymphocyte proliferation and IFNG production.<ref>PMID:18682294</ref> <ref>PMID:1398779</ref> <ref>PMID:7524287</ref> <ref>PMID:8891754</ref> <ref>PMID:9575151</ref> <ref>PMID:10747944</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Dioclea rostrata]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Azevedo, W F.de~~]]	+	[[Category: Macropsychanthus bicolor]]
-	[[Category: Benevides~~, R G~~]]	+	[[Category: Benevides RG]]
-	[[Category: Bezerra~~, E H.S~~]]	+	[[Category: Bezerra EHS]]
-	[[Category: Bezerra~~, G A~~]]	+	[[Category: Bezerra GA]]
-	[[Category: Cavada~~, B S~~]]	+	[[Category: Cavada BS]]
-	[[Category: Delatorre, P]]	+	[[Category: Delatorre P]]
-	[[Category: Freire~~, V N~~]]	+	[[Category: Freire VN]]
-	[[Category: Moreno~~, F B.M B~~]]	+	[[Category: Moreno FBMB]]
-	[[Category: Moura~~, T R~~]]	+	[[Category: Moura TR]]
-	[[Category: Nascimento~~, K S]]~~	+	[[Category: Nascimento KS]]
-	~~[[Category: Oliveira, T M.de~~]]	+	[[Category: Da Rocha BAM]]
-	[[Category: Rocha~~, B A.M da~~]]	+	[[Category: De Azevedo Jr WF]]
-	[[Category: ~~Sousa, E P.de~~]]	+	[[Category: De Oliveira TM]]
-	[[Category: ~~Calcium~~]]	+	[[Category: De Sousa EP]]
-	[[Category: ~~Diocleinae]]~~	+
-	~~[[Category: Lectin]]~~	+
-	~~[[Category: Leguminosae]]~~	+
-	~~[[Category: Manganese]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Sugar binding protein]]~~	+
-	~~[[Category: Vacuole~~]]	+

OCA at 12:01, 29 July 2020

2020-07-29T12:01:41Z

←Older revision		Revision as of 12:01, 29 July 2020
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	==Crystal structure of Dioclea rostrata lectin==		==Crystal structure of Dioclea rostrata lectin==
-	<StructureSection load='2zbj' size='340' side='right' caption='[[2zbj]], [[Resolution\|resolution]] 2.05Å' scene=''>	+	<StructureSection load='2zbj' size='340' side='right'caption='[[2zbj]], [[Resolution\|resolution]] 2.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zbj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dioclea_rostrata Dioclea rostrata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBJ OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ZBJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zbj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dioclea_rostrata Dioclea rostrata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBJ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2ZBJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2zbj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zbj OCA], [http://pdbe.org/2zbj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zbj RCSB], [http://www.ebi.ac.uk/pdbsum/2zbj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zbj ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2zbj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zbj OCA], [http://pdbe.org/2zbj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zbj RCSB], [http://www.ebi.ac.uk/pdbsum/2zbj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zbj ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Dioclea rostrata]]		[[Category: Dioclea rostrata]]
		+	[[Category: Large Structures]]
	[[Category: Azevedo, W F.de]]		[[Category: Azevedo, W F.de]]
	[[Category: Benevides, R G]]		[[Category: Benevides, R G]]

OCA at 09:24, 17 October 2018

2018-10-17T09:24:55Z

←Older revision		Revision as of 09:24, 17 October 2018
Line 1:		Line 1:
		+
	==Crystal structure of Dioclea rostrata lectin==		==Crystal structure of Dioclea rostrata lectin==
	<StructureSection load='2zbj' size='340' side='right' caption='[[2zbj]], [[Resolution\|resolution]] 2.05Å' scene=''>		<StructureSection load='2zbj' size='340' side='right' caption='[[2zbj]], [[Resolution\|resolution]] 2.05Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2zbj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dioclea_rostrata Dioclea rostrata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZBJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2zbj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dioclea_rostrata Dioclea rostrata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZBJ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zbj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zbj OCA], [http://pdbe.org/2zbj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zbj RCSB], [http://www.ebi.ac.uk/pdbsum/2zbj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zbj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zbj OCA], [http://pdbe.org/2zbj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zbj RCSB], [http://www.ebi.ac.uk/pdbsum/2zbj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zbj ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zb/2zbj_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zb/2zbj_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 45:		Line 46:
	[[Category: Rocha, B A.M da]]		[[Category: Rocha, B A.M da]]
	[[Category: Sousa, E P.de]]		[[Category: Sousa, E P.de]]
		+	[[Category: Calcium]]
	[[Category: Diocleinae]]		[[Category: Diocleinae]]
	[[Category: Lectin]]		[[Category: Lectin]]

OCA at 01:17, 8 February 2016

2016-02-08T01:17:45Z

←Older revision		Revision as of 01:17, 8 February 2016
Line 4:		Line 4:
	<table><tr><td colspan='2'>[[2zbj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dioclea_rostrata Dioclea rostrata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZBJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2zbj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dioclea_rostrata Dioclea rostrata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZBJ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zbj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zbj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zbj RCSB], [http://www.ebi.ac.uk/pdbsum/2zbj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zbj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zbj OCA], [http://pdbe.org/2zbj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zbj RCSB], [http://www.ebi.ac.uk/pdbsum/2zbj PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zbj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2zbj" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 19:30, 24 December 2014

2014-12-24T19:30:53Z

←Older revision		Revision as of 19:30, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2zbj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dioclea_rostrata Dioclea rostrata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZBJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2zbj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dioclea_rostrata Dioclea rostrata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZBJ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zbj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zbj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zbj RCSB], [http://www.ebi.ac.uk/pdbsum/2zbj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zbj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zbj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zbj RCSB], [http://www.ebi.ac.uk/pdbsum/2zbj PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LECA_DIORO LECA_DIORO]] D-mannose/D-glucose-binding lectin. Induces histamine release in mast cells from hamster and rat. Induces lymphocyte proliferation and IFNG production.<ref>PMID:18682294</ref> <ref>PMID:1398779</ref> <ref>PMID:7524287</ref> <ref>PMID:8891754</ref> <ref>PMID:9575151</ref> <ref>PMID:10747944</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Dioclea rostrata]]		[[Category: Dioclea rostrata]]
-	[[Category: Azevedo, W F.de.]]	+	[[Category: Azevedo, W F.de]]
-	[[Category: Benevides, R G.]]	+	[[Category: Benevides, R G]]
-	[[Category: Bezerra, E H.S.]]	+	[[Category: Bezerra, E H.S]]
-	[[Category: Bezerra, G A.]]	+	[[Category: Bezerra, G A]]
-	[[Category: Cavada, B S.]]	+	[[Category: Cavada, B S]]
-	[[Category: Delatorre, P.]]	+	[[Category: Delatorre, P]]
-	[[Category: Freire, V N.]]	+	[[Category: Freire, V N]]
-	[[Category: Moreno, F B.M B.]]	+	[[Category: Moreno, F B.M B]]
-	[[Category: Moura, T R.]]	+	[[Category: Moura, T R]]
-	[[Category: Nascimento, K S.]]	+	[[Category: Nascimento, K S]]
-	[[Category: Oliveira, T M.de.]]	+	[[Category: Oliveira, T M.de]]
-	[[Category: Rocha, B A.M da.]]	+	[[Category: Rocha, B A.M da]]
-	[[Category: Sousa, E P.de~~.]]~~	+	[[Category: Sousa, E P.de]]
-	~~[[Category: Dioclea rostrata~~]]	+
	[[Category: Diocleinae]]		[[Category: Diocleinae]]
	[[Category: Lectin]]		[[Category: Lectin]]

OCA at 05:35, 2 October 2014

2014-10-02T05:35:39Z

←Older revision		Revision as of 05:35, 2 October 2014
Line 1:		Line 1:
-	[[~~Image~~:2zbj.~~png\|left~~\|200px]]	+	==Crystal structure of Dioclea rostrata lectin==
		+	<StructureSection load='2zbj' size='340' side='right' caption='[[2zbj]], [[Resolution\|resolution]] 2.05Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2zbj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dioclea_rostrata Dioclea rostrata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZBJ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zbj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zbj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zbj RCSB], [http://www.ebi.ac.uk/pdbsum/2zbj PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zb/2zbj_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The legume lectins from the subtribe Diocleinae, often referred to as concanavalin A-like lectins, are a typical example of highly similar proteins that show distinct biological activities. The pH-dependent oligomerization that some of these lectins undergo and the relative position of amino acids within the carbohydrate-binding site are factors that have been reported to contribute to these differences in the activities of Diocleinae lectins. In the present work, we determined the amino acid sequence and the crystal structure of the lectin of Dioclea rostrata seeds (DRL), with the aim of investigating the structural bases of the different behavior displayed by this lectin in comparison to other Diocleinae lectins and determining the reason for the distinct pH-dependent dimer-tetramer equilibrium. In addition, we discovered a novel multimeric arrangement for this lectin.

-	~~{{STRUCTURE_2zbj\| PDB=2zbj \| SCENE= }}~~	+	Crystal structure of Dioclea rostrata lectin: insights into understanding the pH-dependent dimer-tetramer equilibrium and the structural basis for carbohydrate recognition in Diocleinae lectins.,de Oliveira TM, Delatorre P, da Rocha BA, de Souza EP, Nascimento KS, Bezerra GA, Moura TR, Benevides RG, Bezerra EH, Moreno FB, Freire VN, de Azevedo WF Jr, Cavada BS J Struct Biol. 2008 Nov;164(2):177-82. Epub 2008 Jul 22. PMID:18682294<ref>PMID:18682294</ref>

-	~~===Crystal structure~~ of ~~Dioclea rostrata lectin===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18682294}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2zbj]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Dioclea_rostrata Dioclea rostrata]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBJ OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:018682294<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Dioclea rostrata]]		[[Category: Dioclea rostrata]]
	[[Category: Azevedo, W F.de.]]		[[Category: Azevedo, W F.de.]]

OCA: Protected "2zbj" [edit=sysop:move=sysop]

2013-01-07T20:22:17Z

Protected "2zbj" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:22, 7 January 2013

OCA at 20:22, 7 January 2013

2013-01-07T20:22:15Z

←Older revision		Revision as of 20:22, 7 January 2013
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-	{{Seed}}
	[[Image:2zbj.png\|left\|200px]]		[[Image:2zbj.png\|left\|200px]]

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	{{STRUCTURE_2zbj\| PDB=2zbj \| SCENE= }}		{{STRUCTURE_2zbj\| PDB=2zbj \| SCENE= }}

	===Crystal structure of Dioclea rostrata lectin===		===Crystal structure of Dioclea rostrata lectin===

-
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	{{ABSTRACT_PUBMED_18682294}}		{{ABSTRACT_PUBMED_18682294}}

	==About this Structure==		==About this Structure==
-	~~2ZBJ~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Dioclea_rostrata Dioclea rostrata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBJ OCA].	+	[[2zbj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dioclea_rostrata Dioclea rostrata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBJ OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~18682294~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:018682294</ref><references group="xtra"/>
	[[Category: Dioclea rostrata]]		[[Category: Dioclea rostrata]]
		+	[[Category: Azevedo, W F.de.]]
	[[Category: Benevides, R G.]]		[[Category: Benevides, R G.]]
	[[Category: Bezerra, E H.S.]]		[[Category: Bezerra, E H.S.]]
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	[[Category: Delatorre, P.]]		[[Category: Delatorre, P.]]
	[[Category: Freire, V N.]]		[[Category: Freire, V N.]]
-	[[Category: Jr., W F.de Azevedo.]]
	[[Category: Moreno, F B.M B.]]		[[Category: Moreno, F B.M B.]]
	[[Category: Moura, T R.]]		[[Category: Moura, T R.]]
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	[[Category: Rocha, B A.M da.]]		[[Category: Rocha, B A.M da.]]
	[[Category: Sousa, E P.de.]]		[[Category: Sousa, E P.de.]]
-	[[Category: Calcium]]
	[[Category: Dioclea rostrata]]		[[Category: Dioclea rostrata]]
	[[Category: Diocleinae]]		[[Category: Diocleinae]]
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	[[Category: Sugar binding protein]]		[[Category: Sugar binding protein]]
	[[Category: Vacuole]]		[[Category: Vacuole]]
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OCA at 15:45, 16 February 2009

2009-02-16T15:45:52Z

←Older revision		Revision as of 15:45, 16 February 2009
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	==About this Structure==		==About this Structure==
-	2ZBJ is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Dioclea_rostrata Dioclea rostrata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBJ OCA].	+	2ZBJ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Dioclea_rostrata Dioclea rostrata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBJ OCA].

	==Reference==		==Reference==
-	Crystal structure of Dioclea rostrata lectin: Insights into understanding the pH-dependent dimer-tetramer equilibrium and the structural basis for carbohydrate recognition in Diocleinae lectins., de Oliveira TM, Delatorre P, da Rocha BA, de Souza EP, Nascimento KS, Bezerra GA, Moura TR, Benevides RG, Bezerra EH, Moreno FB, Freire VN, de Azevedo WF Jr, Cavada BS, J Struct Biol. 2008 Jul 22. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/18682294 18682294]~~	+	<ref group="xtra">PMID:18682294</ref><references group="xtra"/>
	[[Category: Dioclea rostrata]]		[[Category: Dioclea rostrata]]
-	[[Category: Single protein]]
	[[Category: Benevides, R G.]]		[[Category: Benevides, R G.]]
	[[Category: Bezerra, E H.S.]]		[[Category: Bezerra, E H.S.]]
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	[[Category: Vacuole]]		[[Category: Vacuole]]

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OCA at 07:57, 29 October 2008

2008-10-29T07:57:16Z

←Older revision		Revision as of 07:57, 29 October 2008
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	{{Seed}}		{{Seed}}
-	[[Image:2zbj.~~jpg~~\|left\|200px]]	+	[[Image:2zbj.png\|left\|200px]]

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	[[Category: Vacuole]]		[[Category: Vacuole]]

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