2zdh - Revision history

OCA at 13:32, 1 November 2023

2023-11-01T13:32:16Z

←Older revision		Revision as of 13:32, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='2zdh' size='340' side='right'caption='[[2zdh]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='2zdh' size='340' side='right'caption='[[2zdh]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zdh]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Thermus_thermophilus~~ Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZDH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2ZDH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zdh]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZDH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZDH FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ADP:ADENOSINE~~-~~5-DIPHOSPHATE'>ADP</scene>~~, ~~<scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~[[2yzg\|2yzg]], [[2yzm\|2yzm]], [[2zdg\|2zdg]]~~<~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<~~tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zdh OCA], [https://pdbe.org/2zdh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zdh RCSB], [https://www.ebi.ac.uk/pdbsum/2zdh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zdh ProSAT], [https://www.topsan.org/Proteins/RSGI/2zdh TOPSAN]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2zdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zdh OCA], [~~http~~://pdbe.org/2zdh PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2zdh RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2zdh PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2zdh ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/2zdh TOPSAN]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/DDL_THET8 DDL_THET8]] Cell wall formation.[HAMAP-Rule:MF_00047]	+	[https://www.uniprot.org/uniprot/DDL_THET8 DDL_THET8] Cell wall formation.[HAMAP-Rule:MF_00047]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 26:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: D-alanine--D-alanine ligase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Thermus thermophilus]]	+	[[Category: Thermus thermophilus HB8]]
-	[[Category: Kitamuta, Y]]	+	[[Category: Kitamuta Y]]
-	[[Category: Kuramitsu, S]]	+	[[Category: Kuramitsu S]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Yokoyama S]]
-	[[Category: Yokoyama, S]]	+
-	~~[[Category: Cell shape]]~~	+
-	~~[[Category: Cell wall biogenesis/degradation]]~~	+
-	~~[[Category: D-alanine-d-alanine ligase]]~~	+
-	~~[[Category: Ligase]]~~	+
-	~~[[Category: National project on protein structural and functional analyse]]~~	+
-	~~[[Category: Nppsfa]]~~	+
-	~~[[Category: Peptidoglycan biosynthesis]]~~	+
-	~~[[Category: Peptidoglycan synthesis]]~~	+
-	~~[[Category: Rsgi~~]]	+

OCA at 12:02, 29 July 2020

2020-07-29T12:02:52Z

←Older revision		Revision as of 12:02, 29 July 2020
Line 1:		Line 1:

	==Crystal structure of D-Alanine:D-Alanine Ligase with ADP and D-Alanine from Thermus thermophius HB8==		==Crystal structure of D-Alanine:D-Alanine Ligase with ADP and D-Alanine from Thermus thermophius HB8==
-	<StructureSection load='2zdh' size='340' side='right' caption='[[2zdh]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='2zdh' size='340' side='right'caption='[[2zdh]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zdh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZDH OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ZDH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zdh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZDH OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2ZDH FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yzg\|2yzg]], [[2yzm\|2yzm]], [[2zdg\|2zdg]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yzg\|2yzg]], [[2yzm\|2yzm]], [[2zdg\|2zdg]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2zdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zdh OCA], [http://pdbe.org/2zdh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zdh RCSB], [http://www.ebi.ac.uk/pdbsum/2zdh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zdh ProSAT], [http://www.topsan.org/Proteins/RSGI/2zdh TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2zdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zdh OCA], [http://pdbe.org/2zdh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zdh RCSB], [http://www.ebi.ac.uk/pdbsum/2zdh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zdh ProSAT], [http://www.topsan.org/Proteins/RSGI/2zdh TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 23:		Line 23:

	==See Also==		==See Also==
-	*[[D-alanine-D-alanine ligase\|D-alanine-D-alanine ligase]]	+	*[[D-alanine-D-alanine ligase 3D structures\|D-alanine-D-alanine ligase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: D-alanine--D-alanine ligase]]		[[Category: D-alanine--D-alanine ligase]]
		+	[[Category: Large Structures]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Kitamuta, Y]]		[[Category: Kitamuta, Y]]

OCA at 06:54, 18 October 2018

2018-10-18T06:54:27Z

←Older revision		Revision as of 06:54, 18 October 2018
Line 15:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zd/2zdh_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zd/2zdh_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 20:35, 11 August 2016

2016-08-11T20:35:11Z

←Older revision		Revision as of 20:35, 11 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of D-Alanine:D-Alanine Ligase with ADP and D-Alanine from Thermus thermophius HB8==		==Crystal structure of D-Alanine:D-Alanine Ligase with ADP and D-Alanine from Thermus thermophius HB8==
	<StructureSection load='2zdh' size='340' side='right' caption='[[2zdh]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='2zdh' size='340' side='right' caption='[[2zdh]], [[Resolution\|resolution]] 1.90Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yzg\|2yzg]], [[2yzm\|2yzm]], [[2zdg\|2zdg]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yzg\|2yzg]], [[2yzm\|2yzm]], [[2zdg\|2zdg]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zdh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zdh RCSB], [http://www.ebi.ac.uk/pdbsum/2zdh PDBsum], [http://www.topsan.org/Proteins/RSGI/2zdh TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zdh OCA], [http://pdbe.org/2zdh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zdh RCSB], [http://www.ebi.ac.uk/pdbsum/2zdh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zdh ProSAT], [http://www.topsan.org/Proteins/RSGI/2zdh TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/DDL_THET8 DDL_THET8]] Cell wall formation.[HAMAP-Rule:MF_00047]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 16:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zdh ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 11:08, 20 January 2015

2015-01-20T11:08:13Z

←Older revision		Revision as of 11:08, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2zdh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZDH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZDH FirstGlance]. <br>		<table><tr><td colspan='2'>[[2zdh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZDH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZDH FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yzg\|2yzg]], [[2yzm\|2yzm]], [[2zdg\|2zdg]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yzg\|2yzg]], [[2yzm\|2yzm]], [[2zdg\|2zdg]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zdh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zdh RCSB], [http://www.ebi.ac.uk/pdbsum/2zdh PDBsum], [http://www.topsan.org/Proteins/RSGI/2zdh TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zdh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zdh RCSB], [http://www.ebi.ac.uk/pdbsum/2zdh PDBsum], [http://www.topsan.org/Proteins/RSGI/2zdh TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 25:
	[[Category: D-alanine--D-alanine ligase]]		[[Category: D-alanine--D-alanine ligase]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
-	[[Category: Kitamuta, Y.]]	+	[[Category: Kitamuta, Y]]
-	[[Category: Kuramitsu, S.]]	+	[[Category: Kuramitsu, S]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Yokoyama, S.]]	+	[[Category: Yokoyama, S]]
	[[Category: Cell shape]]		[[Category: Cell shape]]
	[[Category: Cell wall biogenesis/degradation]]		[[Category: Cell wall biogenesis/degradation]]
Line 37:		Line 37:
	[[Category: Peptidoglycan biosynthesis]]		[[Category: Peptidoglycan biosynthesis]]
	[[Category: Peptidoglycan synthesis]]		[[Category: Peptidoglycan synthesis]]
-	[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
-	[[Category: Structural genomic]]

OCA at 05:19, 2 October 2014

2014-10-02T05:19:07Z

←Older revision		Revision as of 05:19, 2 October 2014
Line 1:		Line 1:
-	[[~~Image:~~2zdh.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of D-Alanine:D-Alanine Ligase with ADP and D-Alanine from Thermus thermophius HB8==
		+	<StructureSection load='2zdh' size='340' side='right' caption='[[2zdh]], [[Resolution\|resolution]] 1.90Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2zdh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZDH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZDH FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yzg\|2yzg]], [[2yzm\|2yzm]], [[2zdg\|2zdg]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zdh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zdh RCSB], [http://www.ebi.ac.uk/pdbsum/2zdh PDBsum], [http://www.topsan.org/Proteins/RSGI/2zdh TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zd/2zdh_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

-	~~{{STRUCTURE_2zdh\| PDB~~=~~2zdh \| SCENE~~= }}	+	==See Also==
-		+	*[[D-alanine-D-alanine ligase\|D-alanine-D-alanine ligase]]
-	==~~=Crystal structure of~~ D-~~Alanine:~~D-~~Alanine Ligase with ADP and~~ D-~~Alanine from Thermus thermophius HB8===~~	+	__TOC__
-		+	</StructureSection>
-	~~{{ABSTRACT_PUBMED_019770507}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2zdh]] is a 4 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZDH OCA].~~	+
	[[Category: D-alanine--D-alanine ligase]]		[[Category: D-alanine--D-alanine ligase]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]

OCA: Protected "2zdh" [edit=sysop:move=sysop]

2013-01-07T22:44:42Z

Protected "2zdh" [edit=sysop:move=sysop]

←Older revision

Revision as of 22:44, 7 January 2013

OCA at 22:44, 7 January 2013

2013-01-07T22:44:38Z

←Older revision		Revision as of 22:44, 7 January 2013
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-	{{Seed}}
	[[Image:2zdh.png\|left\|200px]]		[[Image:2zdh.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2zdh", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_2zdh\| PDB=2zdh \| SCENE= }}		{{STRUCTURE_2zdh\| PDB=2zdh \| SCENE= }}

	===Crystal structure of D-Alanine:D-Alanine Ligase with ADP and D-Alanine from Thermus thermophius HB8===		===Crystal structure of D-Alanine:D-Alanine Ligase with ADP and D-Alanine from Thermus thermophius HB8===

		+	{{ABSTRACT_PUBMED_019770507}}

	==About this Structure==		==About this Structure==
-	~~2ZDH~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZDH OCA].	+	[[2zdh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZDH OCA].
	[[Category: D-alanine--D-alanine ligase]]		[[Category: D-alanine--D-alanine ligase]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
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	[[Category: Cell wall biogenesis/degradation]]		[[Category: Cell wall biogenesis/degradation]]
	[[Category: D-alanine-d-alanine ligase]]		[[Category: D-alanine-d-alanine ligase]]
		+	[[Category: Ligase]]
	[[Category: National project on protein structural and functional analyse]]		[[Category: National project on protein structural and functional analyse]]
	[[Category: Nppsfa]]		[[Category: Nppsfa]]
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	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 18:00:01 2008''

OCA at 16:00, 16 November 2008

2008-11-16T16:00:04Z

←Older revision		Revision as of 16:00, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	2ZDH is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZDH OCA].	+	2ZDH is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZDH OCA].
	[[Category: D-alanine--D-alanine ligase]]		[[Category: D-alanine--D-alanine ligase]]
-	[[Category: Single protein]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Kitamuta, Y.]]		[[Category: Kitamuta, Y.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Sep 29 06~~:14:33 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 18:00:01 2008''

OCA at 03:14, 29 September 2008

2008-09-29T03:14:39Z

←Older revision		Revision as of 03:14, 29 September 2008
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-	[[Image:2zdh.~~jpg~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:2zdh.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_2zdh\| PDB=2zdh \| SCENE= }}		{{STRUCTURE_2zdh\| PDB=2zdh \| SCENE= }}

-	~~'''~~Crystal structure of D-Alanine:D-Alanine Ligase with ADP and D-Alanine from Thermus thermophius HB8~~'''~~	+	===Crystal structure of D-Alanine:D-Alanine Ligase with ADP and D-Alanine from Thermus thermophius HB8===


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	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed May 28 09~~:18:35 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 06:14:33 2008''