3a0f - Revision history

OCA at 14:06, 1 November 2023

2023-11-01T14:06:05Z

←Older revision		Revision as of 14:06, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='3a0f' size='340' side='right'caption='[[3a0f]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='3a0f' size='340' side='right'caption='[[3a0f]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3a0f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Geos1 Geos1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A0F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A0F FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3a0f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geotrichum_sp._M128 Geotrichum sp. M128]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A0F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A0F FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>XEG ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id~~=203496 GEOS1])</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
-	~~<tr id='activity'><td class~~="~~sblockLbl~~">~~<b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Xyloglucan~~-~~specific_endo-beta-1~~,~~4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase~~]~~, with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.~~2.~~1.151 3.2.1.151] </span>~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a0f OCA], [https://pdbe.org/3a0f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a0f RCSB], [https://www.ebi.ac.uk/pdbsum/3a0f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a0f ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a0f OCA], [https://pdbe.org/3a0f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a0f RCSB], [https://www.ebi.ac.uk/pdbsum/3a0f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a0f ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q764N8_GEOS1 Q764N8_GEOS1]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Geos1~~]]	+	[[Category: Geotrichum sp. M128]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]~~	+	[[Category: Hiyoshi A]]
-	[[Category: Hiyoshi, A]]	+	[[Category: Kondo H]]
-	[[Category: Kondo, H]]	+	[[Category: Miyazaki K]]
-	[[Category: Miyazaki, K]]	+	[[Category: Noro N]]
-	[[Category: Noro, N]]	+	[[Category: Sugimoto H]]
-	[[Category: Sugimoto, H]]	+	[[Category: Tsuda S]]
-	[[Category: Tsuda, S]]	+	[[Category: Yaoi K]]
-	[[Category: Yaoi, K]]	+
-	~~[[Category: Beta-propeller]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 16:13, 22 December 2021

2021-12-22T16:13:27Z

←Older revision		Revision as of 16:13, 22 December 2021
Line 1:		Line 1:

	==The crystal structure of Geotrichum sp. M128 xyloglucanase==		==The crystal structure of Geotrichum sp. M128 xyloglucanase==
-	<StructureSection load='3a0f' size='340' side='right' caption='[[3a0f]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='3a0f' size='340' side='right'caption='[[3a0f]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3a0f]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Geos1 Geos1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A0F OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3A0F FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3a0f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geos1 Geos1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A0F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A0F FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">XEG ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=203496 GEOS1])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">XEG ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=203496 GEOS1])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3a0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a0f OCA], [~~http~~://pdbe.org/3a0f PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3a0f RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3a0f PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3a0f ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a0f OCA], [https://pdbe.org/3a0f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a0f RCSB], [https://www.ebi.ac.uk/pdbsum/3a0f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a0f ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 29:		Line 29:

	==See Also==		==See Also==
-	*[[Glucanase\|Glucanase]]	+	*[[Glucanase 3D structures\|Glucanase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 35:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Geos1]]		[[Category: Geos1]]
		+	[[Category: Large Structures]]
	[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]		[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]
	[[Category: Hiyoshi, A]]		[[Category: Hiyoshi, A]]

OCA at 07:30, 18 October 2018

2018-10-18T07:30:31Z

←Older revision		Revision as of 07:30, 18 October 2018
Line 1:		Line 1:
		+
	==The crystal structure of Geotrichum sp. M128 xyloglucanase==		==The crystal structure of Geotrichum sp. M128 xyloglucanase==
	<StructureSection load='3a0f' size='340' side='right' caption='[[3a0f]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='3a0f' size='340' side='right' caption='[[3a0f]], [[Resolution\|resolution]] 2.50Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">XEG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=203496 GEOS1])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">XEG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=203496 GEOS1])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a0f OCA], [http://pdbe.org/3a0f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a0f RCSB], [http://www.ebi.ac.uk/pdbsum/3a0f PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a0f OCA], [http://pdbe.org/3a0f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a0f RCSB], [http://www.ebi.ac.uk/pdbsum/3a0f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a0f ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/3a0f_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/3a0f_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 09:39, 7 February 2016

2016-02-07T09:39:18Z

←Older revision		Revision as of 09:39, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='3a0f' size='340' side='right' caption='[[3a0f]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='3a0f' size='340' side='right' caption='[[3a0f]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3a0f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Geotrichum_sp._m128 Geotrichum sp. m128~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A0F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A0F FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3a0f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geos1 Geos1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A0F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A0F FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">XEG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=203496 ~~Geotrichum sp. M128~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">XEG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=203496 GEOS1])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a0f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a0f RCSB], [http://www.ebi.ac.uk/pdbsum/3a0f PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a0f OCA], [http://pdbe.org/3a0f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a0f RCSB], [http://www.ebi.ac.uk/pdbsum/3a0f PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a0f ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3a0f" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Geotrichum sp. m128~~]]	+	[[Category: Geos1]]
	[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]		[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]
	[[Category: Hiyoshi, A]]		[[Category: Hiyoshi, A]]

OCA at 11:46, 20 January 2015

2015-01-20T11:46:02Z

←Older revision		Revision as of 11:46, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3a0f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geotrichum_sp._m128 Geotrichum sp. m128]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A0F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A0F FirstGlance]. <br>		<table><tr><td colspan='2'>[[3a0f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geotrichum_sp._m128 Geotrichum sp. m128]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A0F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A0F FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">XEG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=203496 Geotrichum sp. M128])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">XEG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=203496 Geotrichum sp. M128])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a0f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a0f RCSB], [http://www.ebi.ac.uk/pdbsum/3a0f PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a0f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a0f RCSB], [http://www.ebi.ac.uk/pdbsum/3a0f PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 34:
	[[Category: Geotrichum sp. m128]]		[[Category: Geotrichum sp. m128]]
	[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]		[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]
-	[[Category: Hiyoshi, A.]]	+	[[Category: Hiyoshi, A]]
-	[[Category: Kondo, H.]]	+	[[Category: Kondo, H]]
-	[[Category: Miyazaki, K.]]	+	[[Category: Miyazaki, K]]
-	[[Category: Noro, N.]]	+	[[Category: Noro, N]]
-	[[Category: Sugimoto, H.]]	+	[[Category: Sugimoto, H]]
-	[[Category: Tsuda, S.]]	+	[[Category: Tsuda, S]]
-	[[Category: Yaoi, K.]]	+	[[Category: Yaoi, K]]
	[[Category: Beta-propeller]]		[[Category: Beta-propeller]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 10:23, 29 September 2014

2014-09-29T10:23:55Z

←Older revision		Revision as of 10:23, 29 September 2014
Line 1:		Line 1:
-	[[~~Image~~:3a0f.~~png\|left~~\|200px]]	+	==The crystal structure of Geotrichum sp. M128 xyloglucanase==
		+	<StructureSection load='3a0f' size='340' side='right' caption='[[3a0f]], [[Resolution\|resolution]] 2.50Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3a0f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geotrichum_sp._m128 Geotrichum sp. m128]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A0F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A0F FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">XEG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=203496 Geotrichum sp. M128])</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a0f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a0f RCSB], [http://www.ebi.ac.uk/pdbsum/3a0f PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/3a0f_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Geotrichum sp. M128 possesses two xyloglucan-specific glycoside hydrolases belonging to family 74, xyloglucan-specific endo-beta-1,4-glucanase (XEG) and oligoxyloglucan reducing-end-specific cellobiohydrolase (OXG-RCBH). Despite their similar amino acid sequences (48% identity), their modes of action and substrate specificities are distinct. XEG catalyzes the hydrolysis of xyloglucan polysaccharides in endo mode, while OXG-RCBH acts on xyloglucan oligosaccharides at the reducing end in exo mode. Here, we determined the crystal structure of XEG at 2.5 A resolution, and compared it to a previously determined structure of OXG-RCBH. For the most part, the amino acid residues that interact with substrate are conserved between the two enzymes. However, there are notable differences at subsite positions -1 and +2. OXG-RCBH has a loop around the +2 site that blocks one end of the active site cleft, which accounts for its exo mode of action. In contrast, XEG lacks a corresponding loop at this site, thereby allowing binding to the middle of the main chain of the substrate. At the -1 site in OXG-RCBH, Asn488 interacts with the xylose side chain of the substrate, whereas the -1 site is occupied by Tyr457 in XEG. To confirm the contribution of this residue to substrate specificity, Tyr457 was substituted by Gly in XEG. The wild-type XEG cleaved the oligoxyloglucan at a specific site; the Y457G variant cleaved the same substrate, but at various sites. Together, the absence of a loop in the cleft and the presence of bulky Tyr457 determine the substrate specificity of XEG.

-	~~{{STRUCTURE_3a0f\| PDB=3a0f \| SCENE= }}~~	+	The crystal structure of a xyloglucan-specific endo-beta-1,4-glucanase from Geotrichum sp. M128 xyloglucanase reveals a key amino acid residue for substrate specificity.,Yaoi K, Kondo H, Hiyoshi A, Noro N, Sugimoto H, Tsuda S, Miyazaki K FEBS J. 2009 Sep;276(18):5094-100. Epub 2009 Aug 4. PMID:19682300<ref>PMID:19682300</ref>

-	~~===The crystal structure~~ of ~~Geotrichum sp~~. ~~M128 xyloglucanase===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19682300}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3a0f]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org~~/~~wiki/Geotrichum_sp._m128 Geotrichum sp. m128]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A0F OCA].~~	+

	==See Also==		==See Also==
	*[[Glucanase\|Glucanase]]		*[[Glucanase\|Glucanase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:019682300<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Geotrichum sp. m128]]		[[Category: Geotrichum sp. m128]]
	[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]		[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]

OCA at 06:16, 20 October 2012

2012-10-20T06:16:14Z

←Older revision		Revision as of 06:16, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3a0f]] is a 1 chain structure ~~of [[Glucanase]]~~ with sequence from [http://en.wikipedia.org/wiki/Geotrichum_sp._m128 Geotrichum sp. m128]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A0F OCA].	+	[[3a0f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geotrichum_sp._m128 Geotrichum sp. m128]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A0F OCA].

	==See Also==		==See Also==

OCA: Protected "3a0f" [edit=sysop:move=sysop]

2012-07-25T12:38:58Z

Protected "3a0f" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:38, 25 July 2012

OCA at 12:38, 25 July 2012

2012-07-25T12:38:55Z

←Older revision		Revision as of 12:38, 25 July 2012
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3a0f.png\|left\|200px]]
-	[[Image:3a0f.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3a0f", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3a0f\| PDB=3a0f \| SCENE= }}		{{STRUCTURE_3a0f\| PDB=3a0f \| SCENE= }}

	===The crystal structure of Geotrichum sp. M128 xyloglucanase===		===The crystal structure of Geotrichum sp. M128 xyloglucanase===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19682300}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19682300 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_19682300}}		{{ABSTRACT_PUBMED_19682300}}

	==About this Structure==		==About this Structure==
-	~~3A0F~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Geotrichum_sp._m128 Geotrichum sp. m128]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A0F OCA].	+	[[3a0f]] is a 1 chain structure of [[Glucanase]] with sequence from [http://en.wikipedia.org/wiki/Geotrichum_sp._m128 Geotrichum sp. m128]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A0F OCA].
		+
		+	==See Also==
		+	*[[Glucanase\|Glucanase]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19682300~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019682300</ref><references group="xtra"/>
	[[Category: Geotrichum sp. m128]]		[[Category: Geotrichum sp. m128]]
	[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]		[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]
Line 35:		Line 26:
	[[Category: Beta-propeller]]		[[Category: Beta-propeller]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 9 09:22:07 2009''

OCA at 06:22, 9 September 2009

2009-09-09T06:22:10Z

←Older revision		Revision as of 06:22, 9 September 2009
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3a0f.jpg\|left\|200px]]

-	The ~~entry 3a0f~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3a0f", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3a0f\| PDB=3a0f \| SCENE= }}

-	~~Authors: Yaoi, K., Kondo, H., Hiyoshi, A., Noro, N., Sugimoto, H., Tsuda, S., Miyazaki, K~~.	+	===The crystal structure of Geotrichum sp. M128 xyloglucanase===

-	Description: The crystal structure of Geotrichum sp. M128 xyloglucanase

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Apr 15~~ 09:45:03 2009''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_19682300}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 19682300 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_19682300}}
		+
		+	==About this Structure==
		+	3A0F is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Geotrichum_sp._m128 Geotrichum sp. m128]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A0F OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:19682300</ref><references group="xtra"/>
		+	[[Category: Geotrichum sp. m128]]
		+	[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]
		+	[[Category: Hiyoshi, A.]]
		+	[[Category: Kondo, H.]]
		+	[[Category: Miyazaki, K.]]
		+	[[Category: Noro, N.]]
		+	[[Category: Sugimoto, H.]]
		+	[[Category: Tsuda, S.]]
		+	[[Category: Yaoi, K.]]
		+	[[Category: Beta-propeller]]
		+	[[Category: Hydrolase]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 9 09:22:07 2009''