3a38 - Revision history

OCA at 14:09, 1 November 2023

2023-11-01T14:09:32Z

←Older revision		Revision as of 14:09, 1 November 2023
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	<StructureSection load='3a38' size='340' side='right'caption='[[3a38]], [[Resolution\|resolution]] 0.70Å' scene=''>		<StructureSection load='3a38' size='340' side='right'caption='[[3a38]], [[Resolution\|resolution]] 0.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3a38]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Thermochromatium_tepidum Thermochromatium tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A38 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=3A38 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3a38]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermochromatium_tepidum Thermochromatium tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A38 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A38 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 0.7Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a39\|3a39]], [[1iua\|1iua]], [[1eyt\|1eyt]]~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=3a38 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a38 OCA], [~~http~~://pdbe.org/3a38 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3a38 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3a38 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3a38 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a38 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a38 OCA], [https://pdbe.org/3a38 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a38 RCSB], [https://www.ebi.ac.uk/pdbsum/3a38 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a38 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/HIP_THETI HIP_THETI]] Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria.	+	[https://www.uniprot.org/uniprot/HIP_THETI HIP_THETI] Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 35:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Thermochromatium tepidum]]		[[Category: Thermochromatium tepidum]]
-	[[Category: Hirano, Y]]	+	[[Category: Hirano Y]]
-	[[Category: Kusumoto, K]]	+	[[Category: Kusumoto K]]
-	[[Category: Miki, K]]	+	[[Category: Miki K]]
-	[[Category: Takeda, K]]	+	[[Category: Takeda K]]
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Iron]]~~	+
-	~~[[Category: Iron-sulfur]]~~	+
-	~~[[Category: Iron-sulfur cluster]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Transport~~]]	+

OCA at 12:15, 29 July 2020

2020-07-29T12:15:55Z

←Older revision		Revision as of 12:15, 29 July 2020
Line 1:		Line 1:

	==Crystal structure of high-potential iron-sulfur protein from Thermochromatium tepidum at 0.7 angstrom resolution==		==Crystal structure of high-potential iron-sulfur protein from Thermochromatium tepidum at 0.7 angstrom resolution==
-	<StructureSection load='3a38' size='340' side='right' caption='[[3a38]], [[Resolution\|resolution]] 0.70Å' scene=''>	+	<StructureSection load='3a38' size='340' side='right'caption='[[3a38]], [[Resolution\|resolution]] 0.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3a38]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermochromatium_tepidum Thermochromatium tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A38 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3A38 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3a38]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermochromatium_tepidum Thermochromatium tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A38 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3A38 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a39\|3a39]], [[1iua\|1iua]], [[1eyt\|1eyt]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a39\|3a39]], [[1iua\|1iua]], [[1eyt\|1eyt]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3a38 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a38 OCA], [http://pdbe.org/3a38 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a38 RCSB], [http://www.ebi.ac.uk/pdbsum/3a38 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a38 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3a38 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a38 OCA], [http://pdbe.org/3a38 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a38 RCSB], [http://www.ebi.ac.uk/pdbsum/3a38 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a38 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 33:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Thermochromatium tepidum]]		[[Category: Thermochromatium tepidum]]
	[[Category: Hirano, Y]]		[[Category: Hirano, Y]]

OCA at 07:31, 18 October 2018

2018-10-18T07:31:14Z

←Older revision		Revision as of 07:31, 18 October 2018
Line 14:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a3/3a38_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a3/3a38_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 19:19, 5 August 2016

2016-08-05T19:19:02Z

←Older revision		Revision as of 19:19, 5 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of high-potential iron-sulfur protein from Thermochromatium tepidum at 0.7 angstrom resolution==		==Crystal structure of high-potential iron-sulfur protein from Thermochromatium tepidum at 0.7 angstrom resolution==
	<StructureSection load='3a38' size='340' side='right' caption='[[3a38]], [[Resolution\|resolution]] 0.70Å' scene=''>		<StructureSection load='3a38' size='340' side='right' caption='[[3a38]], [[Resolution\|resolution]] 0.70Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a39\|3a39]], [[1iua\|1iua]], [[1eyt\|1eyt]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a39\|3a39]], [[1iua\|1iua]], [[1eyt\|1eyt]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a38 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a38 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a38 RCSB], [http://www.ebi.ac.uk/pdbsum/3a38 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a38 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a38 OCA], [http://pdbe.org/3a38 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a38 RCSB], [http://www.ebi.ac.uk/pdbsum/3a38 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a38 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a38 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 27:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3a38" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 21:15, 25 December 2014

2014-12-25T21:15:48Z

←Older revision		Revision as of 21:15, 25 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a38 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a38 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a38 RCSB], [http://www.ebi.ac.uk/pdbsum/3a38 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a38 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a38 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a38 RCSB], [http://www.ebi.ac.uk/pdbsum/3a38 PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/HIP_THETI HIP_THETI]] Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Thermochromatium tepidum]]		[[Category: Thermochromatium tepidum]]
-	[[Category: Hirano, Y.]]	+	[[Category: Hirano, Y]]
-	[[Category: Kusumoto, K.]]	+	[[Category: Kusumoto, K]]
-	[[Category: Miki, K.]]	+	[[Category: Miki, K]]
-	[[Category: Takeda, K.]]	+	[[Category: Takeda, K]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Iron]]		[[Category: Iron]]

OCA at 06:14, 10 October 2014

2014-10-10T06:14:42Z

←Older revision		Revision as of 06:14, 10 October 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3a38]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermochromatium_tepidum Thermochromatium tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A38 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A38 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3a38]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermochromatium_tepidum Thermochromatium tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A38 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A38 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a39\|3a39]], [[1iua\|1iua]], [[1eyt\|1eyt]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a39\|3a39]], [[1iua\|1iua]], [[1eyt\|1eyt]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a38 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a38 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a38 RCSB], [http://www.ebi.ac.uk/pdbsum/3a38 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a38 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a38 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a38 RCSB], [http://www.ebi.ac.uk/pdbsum/3a38 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 23:
	Detailed assessment of X-ray induced structural perturbation in a crystalline state protein.,Takeda K, Kusumoto K, Hirano Y, Miki K J Struct Biol. 2010 Feb;169(2):135-44. Epub 2009 Sep 24. PMID:19782139<ref>PMID:19782139</ref>		Detailed assessment of X-ray induced structural perturbation in a crystalline state protein.,Takeda K, Kusumoto K, Hirano Y, Miki K J Struct Biol. 2010 Feb;169(2):135-44. Epub 2009 Sep 24. PMID:19782139<ref>PMID:19782139</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==

OCA at 12:58, 18 May 2014

2014-05-18T12:58:24Z

←Older revision		Revision as of 12:58, 18 May 2014
Line 1:		Line 1:
-	[[~~Image:~~3a38.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of high-potential iron-sulfur protein from Thermochromatium tepidum at 0.7 angstrom resolution==
		+	<StructureSection load='3a38' size='340' side='right' caption='[[3a38]], [[Resolution\|resolution]] 0.70Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3a38]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermochromatium_tepidum Thermochromatium tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A38 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A38 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a39\|3a39]], [[1iua\|1iua]], [[1eyt\|1eyt]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a38 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a38 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a38 RCSB], [http://www.ebi.ac.uk/pdbsum/3a38 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a3/3a38_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The positions of hydrogen atoms significantly define protein functions. However, such information from protein crystals is easily disturbed by X-rays. The damage can not be prevented completely even in the data collection at cryogenic temperatures. Therefore, the influence of X-rays should be precisely estimated in order to derive meaningful information from the crystallographic results. Diffraction data from a single crystal of the high-potential iron-sulfur protein (HiPIP) from Thermochromatium tepidum were collected at an undulator beamline of a third generation synchrotron facility, and were merged into three data sets according to X-ray dose. A series of structures analyzed at 0.70A shows detailed views of the X-ray induced perturbation, such as the positional changes of hydrogen atoms of a water molecule. Based on the results, we successfully collected a low perturbation data set using attenuated X-rays. There was no influence on the crystallographic statistics, such as the relative B factors, during the course of data collection. The electron densities for hydrogen atoms were more clear despite the slightly lower resolution.

-	~~{{STRUCTURE_3a38\| PDB=3a38 \| SCENE= }}~~	+	Detailed assessment of X-ray induced structural perturbation in a crystalline state protein.,Takeda K, Kusumoto K, Hirano Y, Miki K J Struct Biol. 2010 Feb;169(2):135-44. Epub 2009 Sep 24. PMID:19782139<ref>PMID:19782139</ref>

-	~~===Crystal structure~~ of ~~high-potential iron-sulfur protein from Thermochromatium tepidum at 0~~.~~7 angstrom resolution===~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19782139}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[3a38]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org~~/~~wiki/Thermochromatium_tepidum Thermochromatium tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A38 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:019782139<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Thermochromatium tepidum]]		[[Category: Thermochromatium tepidum]]
	[[Category: Hirano, Y.]]		[[Category: Hirano, Y.]]

OCA: Protected "3a38" [edit=sysop:move=sysop]

2013-01-07T21:06:20Z

Protected "3a38" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:06, 7 January 2013

OCA at 21:06, 7 January 2013

2013-01-07T21:06:16Z

←Older revision		Revision as of 21:06, 7 January 2013
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-	~~{{Seed}}~~	+	[[Image:3a38.png\|left\|200px]]
-	[[Image:3a38.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3a38", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3a38\| PDB=3a38 \| SCENE= }}		{{STRUCTURE_3a38\| PDB=3a38 \| SCENE= }}

	===Crystal structure of high-potential iron-sulfur protein from Thermochromatium tepidum at 0.7 angstrom resolution===		===Crystal structure of high-potential iron-sulfur protein from Thermochromatium tepidum at 0.7 angstrom resolution===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19782139}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19782139 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19782139}}		{{ABSTRACT_PUBMED_19782139}}

	==About this Structure==		==About this Structure==
-	~~3A38~~ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermochromatium_tepidum Thermochromatium tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A38 OCA].	+	[[3a38]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermochromatium_tepidum Thermochromatium tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A38 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19782139~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019782139</ref><references group="xtra"/>
	[[Category: Thermochromatium tepidum]]		[[Category: Thermochromatium tepidum]]
	[[Category: Hirano, Y.]]		[[Category: Hirano, Y.]]
Line 29:		Line 17:
	[[Category: Miki, K.]]		[[Category: Miki, K.]]
	[[Category: Takeda, K.]]		[[Category: Takeda, K.]]
-	[[Category: 4fe-4]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Iron]]		[[Category: Iron]]
Line 36:		Line 23:
	[[Category: Metal-binding]]		[[Category: Metal-binding]]
	[[Category: Transport]]		[[Category: Transport]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 27 19:36:16 2010''

OCA at 17:36, 27 January 2010

2010-01-27T17:36:16Z

←Older revision		Revision as of 17:36, 27 January 2010
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-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3a38.jpg\|left\|200px]]

-	The ~~entry 3a38~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3a38", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3a38\| PDB=3a38 \| SCENE= }}

-	~~Authors: Takeda, K., Kusumoto, K., Hirano, Y., Miki, K~~.	+	===Crystal structure of high-potential iron-sulfur protein from Thermochromatium tepidum at 0.7 angstrom resolution===

-	Description: Crystal structure of high-potential iron-sulfur protein from Thermochromatium tepidum at 0.7 angstrom resolution

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Aug 12 12~~:20:~~32 2009~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_19782139}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 19782139 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_19782139}}
		+
		+	==About this Structure==
		+	3A38 is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermochromatium_tepidum Thermochromatium tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A38 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:19782139</ref><references group="xtra"/>
		+	[[Category: Thermochromatium tepidum]]
		+	[[Category: Hirano, Y.]]
		+	[[Category: Kusumoto, K.]]
		+	[[Category: Miki, K.]]
		+	[[Category: Takeda, K.]]
		+	[[Category: 4fe-4]]
		+	[[Category: Electron transport]]
		+	[[Category: Iron]]
		+	[[Category: Iron-sulfur]]
		+	[[Category: Iron-sulfur cluster]]
		+	[[Category: Metal-binding]]
		+	[[Category: Transport]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 27 19:36:16 2010''