3a96 - Revision history

OCA at 14:16, 1 November 2023

2023-11-01T14:16:11Z

←Older revision		Revision as of 14:16, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='3a96' size='340' side='right'caption='[[3a96]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='3a96' size='340' side='right'caption='[[3a96]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3a96]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A96 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=3A96 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3a96]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A96 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A96 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>~~, ~~<scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=RH3:RHODIUM(III)+ION'>RH3</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.75Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~[[3a8z\|3a8z]], [[3a90\|3a90]], [[3a91\|3a91]], [[3a92\|3a92]], [[3a93\|3a93]], [[3a94\|3a94]], [[3a95\|3a95]]~~<~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=RH3:RHODIUM(III)+ION'>RH3</scene></td></tr>
-	<~~tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class="sblockDat"><span class~~='~~plainlinks~~'>~~[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a96 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a96 OCA], [https://pdbe.org/3a96 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a96 RCSB], [https://www.ebi.ac.uk/pdbsum/3a96 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a96 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=3a96 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a96 OCA], [~~http~~://pdbe.org/3a96 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3a96 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3a96 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3a96 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>	+	[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 39:		Line 38:
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Lysozyme]]~~	+	[[Category: Abe S]]
-	[[Category: Abe, S]]	+	[[Category: Hikage T]]
-	[[Category: Hikage, T]]	+	[[Category: Koshiyama T]]
-	[[Category: Koshiyama, T]]	+	[[Category: Ohki T]]
-	[[Category: Ohki, T]]	+	[[Category: Ueno T]]
-	[[Category: Ueno, T]]	+	[[Category: Watanabe Y]]
-	[[Category: Watanabe, Y]]	+
-	~~[[Category: Allergen]]~~	+
-	~~[[Category: Antimicrobial]]~~	+
-	~~[[Category: Bacteriolytic enzyme]]~~	+
-	~~[[Category: Disulfide bond]]~~	+
-	~~[[Category: Glycosidase]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 12:20, 29 July 2020

2020-07-29T12:20:02Z

←Older revision		Revision as of 12:20, 29 July 2020
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	==Crystal structure of hen egg white lysozyme soaked with 100mM RhCl3 at pH2.2==		==Crystal structure of hen egg white lysozyme soaked with 100mM RhCl3 at pH2.2==
-	<StructureSection load='3a96' size='340' side='right' caption='[[3a96]], [[Resolution\|resolution]] 1.75Å' scene=''>	+	<StructureSection load='3a96' size='340' side='right'caption='[[3a96]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3a96]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A96 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3A96 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3a96]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A96 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3A96 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=RH3:RHODIUM(III)+ION'>RH3</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=RH3:RHODIUM(III)+ION'>RH3</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a8z\|3a8z]], [[3a90\|3a90]], [[3a91\|3a91]], [[3a92\|3a92]], [[3a93\|3a93]], [[3a94\|3a94]], [[3a95\|3a95]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a8z\|3a8z]], [[3a90\|3a90]], [[3a91\|3a91]], [[3a92\|3a92]], [[3a93\|3a93]], [[3a94\|3a94]], [[3a95\|3a95]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3a96 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a96 OCA], [http://pdbe.org/3a96 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a96 RCSB], [http://www.ebi.ac.uk/pdbsum/3a96 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a96 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3a96 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a96 OCA], [http://pdbe.org/3a96 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a96 RCSB], [http://www.ebi.ac.uk/pdbsum/3a96 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a96 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 38:		Line 38:
	</StructureSection>		</StructureSection>
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
		+	[[Category: Large Structures]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
	[[Category: Abe, S]]		[[Category: Abe, S]]

OCA at 08:20, 24 October 2018

2018-10-24T08:20:13Z

←Older revision		Revision as of 08:20, 24 October 2018
Line 3:		Line 3:
	<StructureSection load='3a96' size='340' side='right' caption='[[3a96]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='3a96' size='340' side='right' caption='[[3a96]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3a96]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Chick Chick~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A96 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A96 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3a96]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A96 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A96 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=RH3:RHODIUM(III)+ION'>RH3</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=RH3:RHODIUM(III)+ION'>RH3</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a8z\|3a8z]], [[3a90\|3a90]], [[3a91\|3a91]], [[3a92\|3a92]], [[3a93\|3a93]], [[3a94\|3a94]], [[3a95\|3a95]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a8z\|3a8z]], [[3a90\|3a90]], [[3a91\|3a91]], [[3a92\|3a92]], [[3a93\|3a93]], [[3a94\|3a94]], [[3a95\|3a95]]</td></tr>
Line 15:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a9/3a96_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a9/3a96_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 37:		Line 37:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Chick~~]]	+	[[Category: Gallus gallus]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
	[[Category: Abe, S]]		[[Category: Abe, S]]

OCA at 03:51, 5 August 2016

2016-08-05T03:51:18Z

←Older revision		Revision as of 03:51, 5 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of hen egg white lysozyme soaked with 100mM RhCl3 at pH2.2==		==Crystal structure of hen egg white lysozyme soaked with 100mM RhCl3 at pH2.2==
	<StructureSection load='3a96' size='340' side='right' caption='[[3a96]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='3a96' size='340' side='right' caption='[[3a96]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3a96]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Gallus_gallus Gallus gallus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A96 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A96 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3a96]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chick Chick]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A96 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A96 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=RH3:RHODIUM(III)+ION'>RH3</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=RH3:RHODIUM(III)+ION'>RH3</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a8z\|3a8z]], [[3a90\|3a90]], [[3a91\|3a91]], [[3a92\|3a92]], [[3a93\|3a93]], [[3a94\|3a94]], [[3a95\|3a95]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a8z\|3a8z]], [[3a90\|3a90]], [[3a91\|3a91]], [[3a92\|3a92]], [[3a93\|3a93]], [[3a94\|3a94]], [[3a95\|3a95]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a96 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a96 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a96 RCSB], [http://www.ebi.ac.uk/pdbsum/3a96 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a96 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a96 OCA], [http://pdbe.org/3a96 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a96 RCSB], [http://www.ebi.ac.uk/pdbsum/3a96 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a96 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a96 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 28:		Line 29:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3a96" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 35:		Line 37:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Gallus gallus~~]]	+	[[Category: Chick]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
	[[Category: Abe, S]]		[[Category: Abe, S]]

OCA at 15:37, 25 December 2014

2014-12-25T15:37:24Z

←Older revision		Revision as of 15:37, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3a96]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A96 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A96 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3a96]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A96 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A96 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=RH3:RHODIUM(III)+ION'>RH3</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=RH3:RHODIUM(III)+ION'>RH3</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a8z\|3a8z]], [[3a90\|3a90]], [[3a91\|3a91]], [[3a92\|3a92]], [[3a93\|3a93]], [[3a94\|3a94]], [[3a95\|3a95]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a8z\|3a8z]], [[3a90\|3a90]], [[3a91\|3a91]], [[3a92\|3a92]], [[3a93\|3a93]], [[3a94\|3a94]], [[3a95\|3a95]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a96 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a96 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a96 RCSB], [http://www.ebi.ac.uk/pdbsum/3a96 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a96 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a96 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a96 RCSB], [http://www.ebi.ac.uk/pdbsum/3a96 PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 37:
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
-	[[Category: Abe, S.]]	+	[[Category: Abe, S]]
-	[[Category: Hikage, T.]]	+	[[Category: Hikage, T]]
-	[[Category: Koshiyama, T.]]	+	[[Category: Koshiyama, T]]
-	[[Category: Ohki, T.]]	+	[[Category: Ohki, T]]
-	[[Category: Ueno, T.]]	+	[[Category: Ueno, T]]
-	[[Category: Watanabe, Y.]]	+	[[Category: Watanabe, Y]]
	[[Category: Allergen]]		[[Category: Allergen]]
	[[Category: Antimicrobial]]		[[Category: Antimicrobial]]

OCA at 07:14, 29 September 2014

2014-09-29T07:14:35Z

←Older revision		Revision as of 07:14, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~3a96.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of hen egg white lysozyme soaked with 100mM RhCl3 at pH2.2==
		+	<StructureSection load='3a96' size='340' side='right' caption='[[3a96]], [[Resolution\|resolution]] 1.75Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3a96]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A96 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A96 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=RH3:RHODIUM(III)+ION'>RH3</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a8z\|3a8z]], [[3a90\|3a90]], [[3a91\|3a91]], [[3a92\|3a92]], [[3a93\|3a93]], [[3a94\|3a94]], [[3a95\|3a95]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a96 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a96 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a96 RCSB], [http://www.ebi.ac.uk/pdbsum/3a96 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a9/3a96_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Metal-ion accumulation on protein surfaces is a crucial step in the initiation of small-metal clusters and the formation of inorganic materials in nature. This event is expected to control the nucleation, growth, and position of the materials. There remain many unknowns, as to how proteins affect the initial process at the atomic level, although multistep assembly processes of the materials formation by both native and model systems have been clarified at the macroscopic level. Herein the cooperative effects of amino acids and hydrogen bonds promoting metal accumulation reactions are clarified by using porous hen egg white lysozyme (HEWL) crystals containing Rh(III) ions, as model protein surfaces for the reactions. The experimental results reveal noteworthy implications for initiation of metal accumulation, which involve highly cooperative dynamics of amino acids and hydrogen bonds: i) Disruption of hydrogen bonds can induce conformational changes of amino-acid residues to capture Rh(III) ions. ii) Water molecules pre-organized by hydrogen bonds can stabilize Rh(III) coordination as aqua ligands. iii) Water molecules participating in hydrogen bonds with amino-acid residues can be replaced by Rh(III) ions to form polynuclear structures with the residues. iv) Rh(III) aqua complexes are retained on amino-acid residues through stabilizing hydrogen bonds even at low pH ( approximately 2). These metal-protein interactions including hydrogen bonds may promote native metal accumulation reactions and also may be useful in the preparation of new inorganic materials that incorporate proteins.

-	~~{{STRUCTURE_3a96\| PDB=3a96 \| SCENE= }}~~	+	Elucidation of Metal-Ion Accumulation Induced by Hydrogen Bonds on Protein Surfaces by Using Porous Lysozyme Crystals Containing Rh(III) Ions as the Model Surfaces.,Ueno T, Abe S, Koshiyama T, Ohki T, Hikage T, Watanabe Y Chemistry. 2010 Mar 1;16(9):2730-40. PMID:20146274<ref>PMID:20146274</ref>

-	~~===Crystal structure~~ of ~~hen egg white lysozyme soaked with 100mM RhCl3 at pH2~~.~~2===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_20146274}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3a96]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org~~/~~wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A96 OCA].~~	+

	==See Also==		==See Also==
-	*[[~~Hen Egg-White (HEW)~~ Lysozyme\|~~Hen Egg-White (HEW)~~ Lysozyme]]	+	*[[Lysozyme 3D structures\|Lysozyme 3D structures]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:020146274<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]

OCA at 18:25, 20 October 2012

2012-10-20T18:25:57Z

←Older revision		Revision as of 18:25, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3a96]] is a 1 chain structure ~~of [[Hen Egg-White (HEW) Lysozyme]]~~ with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A96 OCA].	+	[[3a96]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A96 OCA].

	==See Also==		==See Also==

OCA: Protected "3a96" [edit=sysop:move=sysop]

2012-07-27T04:03:36Z

Protected "3a96" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:03, 27 July 2012

OCA at 04:03, 27 July 2012

2012-07-27T04:03:33Z

←Older revision		Revision as of 04:03, 27 July 2012
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3a96.png\|left\|200px]]
-	[[Image:3a96.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3a96", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3a96\| PDB=3a96 \| SCENE= }}		{{STRUCTURE_3a96\| PDB=3a96 \| SCENE= }}

	===Crystal structure of hen egg white lysozyme soaked with 100mM RhCl3 at pH2.2===		===Crystal structure of hen egg white lysozyme soaked with 100mM RhCl3 at pH2.2===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_20146274}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 20146274 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_20146274}}		{{ABSTRACT_PUBMED_20146274}}

	==About this Structure==		==About this Structure==
-	~~3A96~~ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A96 OCA].	+	[[3a96]] is a 1 chain structure of [[Hen Egg-White (HEW) Lysozyme]] with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A96 OCA].
		+
		+	==See Also==
		+	*[[Hen Egg-White (HEW) Lysozyme\|Hen Egg-White (HEW) Lysozyme]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20146274~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020146274</ref><references group="xtra"/>
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
Line 38:		Line 29:
	[[Category: Glycosidase]]		[[Category: Glycosidase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 10 14:15:22 2010''

OCA at 12:15, 10 March 2010

2010-03-10T12:15:24Z

←Older revision		Revision as of 12:15, 10 March 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3a96.jpg\|left\|200px]]

-	The ~~entry 3a96~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3a96", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3a96\| PDB=3a96 \| SCENE= }}

-	~~Authors: Abe, S., Koshiyama, T., Ohki, T., Hikage, T., Watanabe, Y., Ueno, T~~.	+	===Crystal structure of hen egg white lysozyme soaked with 100mM RhCl3 at pH2.2===

-	Description: Crystal structure of hen egg white lysozyme soaked with 100mM RhCl3 at pH2.2

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Nov 18 18~~:38:~~46 2009~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_20146274}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 20146274 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_20146274}}
		+
		+	==About this Structure==
		+	3A96 is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A96 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:20146274</ref><references group="xtra"/>
		+	[[Category: Gallus gallus]]
		+	[[Category: Lysozyme]]
		+	[[Category: Abe, S.]]
		+	[[Category: Hikage, T.]]
		+	[[Category: Koshiyama, T.]]
		+	[[Category: Ohki, T.]]
		+	[[Category: Ueno, T.]]
		+	[[Category: Watanabe, Y.]]
		+	[[Category: Allergen]]
		+	[[Category: Antimicrobial]]
		+	[[Category: Bacteriolytic enzyme]]
		+	[[Category: Disulfide bond]]
		+	[[Category: Glycosidase]]
		+	[[Category: Hydrolase]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 10 14:15:22 2010''