3a9v - Revision history

OCA at 14:16, 1 November 2023

2023-11-01T14:16:39Z

←Older revision		Revision as of 14:16, 1 November 2023
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	<StructureSection load='3a9v' size='340' side='right'caption='[[3a9v]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='3a9v' size='340' side='right'caption='[[3a9v]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3a9v]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Chinese_white_poplar Chinese white poplar~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A9V OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=3A9V FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3a9v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Populus_tomentosa Populus tomentosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A9V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A9V FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~>[[3a9u\|3a9u]], [[3ni2\|3ni2]]</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene></td></tr>
-	~~<tr~~ id~~='activity'><td class~~="~~sblockLbl~~"><~~b>Activity:</b></td><td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/4-coumarate--CoA_ligase 4-coumarate--CoA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.2.1.12 6.2.1.12]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a9v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a9v OCA], [https://pdbe.org/3a9v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a9v RCSB], [https://www.ebi.ac.uk/pdbsum/3a9v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a9v ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=3a9v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a9v OCA], [~~http~~://pdbe.org/3a9v PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3a9v RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3a9v PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3a9v ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q941M3_POPTO Q941M3_POPTO]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: 4-coumarate--CoA ligase]]
-	[[Category: Chinese white poplar]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Hu, Y~~]]	+	[[Category: Populus tomentosa]]
-	[[Category: ~~4-coumate--coa ligase]]~~	+	[[Category: Hu Y]]
-	~~[[Category: Ligase]]~~	+
-	~~[[Category: Phenylpropanoid pathway~~]]	+

OCA at 10:22, 12 August 2020

2020-08-12T10:22:30Z

OCA at 13:54, 7 November 2018

2018-11-07T13:54:17Z

←Older revision		Revision as of 13:54, 7 November 2018
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a9/3a9v_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a9/3a9v_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 18:45, 1 February 2017

2017-02-01T18:45:01Z

←Older revision		Revision as of 18:45, 1 February 2017
Line 1:		Line 1:
		+
	==Crystal structures and enzymatic mechanisms of a Populus tomentosa 4-coumarate--CoA ligase==		==Crystal structures and enzymatic mechanisms of a Populus tomentosa 4-coumarate--CoA ligase==
	<StructureSection load='3a9v' size='340' side='right' caption='[[3a9v]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='3a9v' size='340' side='right' caption='[[3a9v]], [[Resolution\|resolution]] 2.50Å' scene=''>
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	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a9u\|3a9u]], [[3ni2\|3ni2]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a9u\|3a9u]], [[3ni2\|3ni2]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-coumarate--CoA_ligase 4-coumarate--CoA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.2.1.12 6.2.1.12] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-coumarate--CoA_ligase 4-coumarate--CoA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.2.1.12 6.2.1.12] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a9v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a9v OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a9v RCSB], [http://www.ebi.ac.uk/pdbsum/3a9v PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a9v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a9v OCA], [http://pdbe.org/3a9v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a9v RCSB], [http://www.ebi.ac.uk/pdbsum/3a9v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a9v ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a9v ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3a9v" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 05:36, 30 April 2015

2015-04-30T05:36:56Z

←Older revision		Revision as of 05:36, 30 April 2015
Line 2:		Line 2:
	<StructureSection load='3a9v' size='340' side='right' caption='[[3a9v]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='3a9v' size='340' side='right' caption='[[3a9v]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3a9v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Populus_tomentosa Populus tomentosa~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A9V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A9V FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3a9v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chinese_white_poplar Chinese white poplar]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A9V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A9V FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a9u\|3a9u]], [[3ni2\|3ni2]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a9u\|3a9u]], [[3ni2\|3ni2]]</td></tr>
Line 18:		Line 18:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	4-Coumaric acid:CoA ligase (4CL) is the central enzyme of the plant-specific phenylpropanoid pathway. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters, the precursors of lignin and other important phenylpropanoids, in two-step reactions involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. In this study, we determined the crystal structures of Populus tomentosa 4CL1 in the unmodified (apo) form and in forms complexed with AMP and adenosine 5'-(3-(4-hydroxyphenyl)propyl)phosphate (APP), an intermediate analog, at 2.4, 2.5, and 1.9 A resolution, respectively. 4CL1 consists of two globular domains connected by a flexible linker region. The larger N-domain contains a substrate binding pocket, while the C-domain contains catalytic residues. Upon binding of APP, the C-domain rotates 81 degrees relative to the N-domain. The crystal structure of 4CL1-APP reveals its substrate binding pocket. We identified residues essential for catalytic activities (Lys-438, Gln-443, and Lys-523) and substrate binding (Tyr-236, Gly-306, Gly-331, Pro-337, and Val-338) based on their crystal structures and by means of mutagenesis and enzymatic activity studies. We also demonstrated that the size of the binding pocket is the most important factor in determining the substrate specificities of 4CL1. These findings shed light on the enzymatic mechanisms of 4CLs and provide a solid foundation for the bioengineering of these enzymes.
		+
		+	Crystal structures of a Populus tomentosa 4-coumarate:CoA ligase shed light on its enzymatic mechanisms.,Hu Y, Gai Y, Yin L, Wang X, Feng C, Feng L, Li D, Jiang XN, Wang DC Plant Cell. 2010 Sep;22(9):3093-104. Epub 2010 Sep 14. PMID:20841425<ref>PMID:20841425</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: 4-coumarate--CoA ligase]]		[[Category: 4-coumarate--CoA ligase]]
-	[[Category: ~~Populus tomentosa~~]]	+	[[Category: Chinese white poplar]]
	[[Category: Hu, Y]]		[[Category: Hu, Y]]
	[[Category: 4-coumate--coa ligase]]		[[Category: 4-coumate--coa ligase]]
	[[Category: Ligase]]		[[Category: Ligase]]
	[[Category: Phenylpropanoid pathway]]		[[Category: Phenylpropanoid pathway]]

OCA at 10:40, 25 January 2015

2015-01-25T10:40:16Z

←Older revision		Revision as of 10:40, 25 January 2015
Line 22:		Line 22:
	[[Category: 4-coumarate--CoA ligase]]		[[Category: 4-coumarate--CoA ligase]]
	[[Category: Populus tomentosa]]		[[Category: Populus tomentosa]]
-	[[Category: Hu, Y.]]	+	[[Category: Hu, Y]]
	[[Category: 4-coumate--coa ligase]]		[[Category: 4-coumate--coa ligase]]
-	[[Category: 4cl]]
	[[Category: Ligase]]		[[Category: Ligase]]
	[[Category: Phenylpropanoid pathway]]		[[Category: Phenylpropanoid pathway]]

OCA at 11:58, 29 October 2014

2014-10-29T11:58:21Z

←Older revision		Revision as of 11:58, 29 October 2014
Line 1:		Line 1:
-	~~[[Image:3a9v.png\|left\|200px]]~~	+	==Crystal structures and enzymatic mechanisms of a Populus tomentosa 4-coumarate--CoA ligase==
-		+	<StructureSection load='3a9v' size='340' side='right' caption='[[3a9v]], [[Resolution\|resolution]] 2.50Å' scene=''>
-	~~{{STRUCTURE_3a9v\| PDB=3a9v \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3a9v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Populus_tomentosa Populus tomentosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A9V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A9V FirstGlance]. <br>
-	===Crystal structures and enzymatic mechanisms of a Populus tomentosa 4-coumarate--CoA ligase===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a9u\|3a9u]], [[3ni2\|3ni2]]</td></tr>
-	~~{{ABSTRACT_PUBMED_020841425}}~~	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-coumarate--CoA_ligase 4-coumarate--CoA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.2.1.12 6.2.1.12] </span></td></tr>
-		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a9v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a9v OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a9v RCSB], [http://www.ebi.ac.uk/pdbsum/3a9v PDBsum]</span></td></tr>
-	==~~About this Structure~~==	+	</table>
-	[[3a9v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Populus_tomentosa Populus tomentosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A9V OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a9/3a9v_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: 4-coumarate--CoA ligase]]		[[Category: 4-coumarate--CoA ligase]]
	[[Category: Populus tomentosa]]		[[Category: Populus tomentosa]]

OCA: Protected "3a9v" [edit=sysop:move=sysop]

2013-01-07T19:42:14Z

Protected "3a9v" [edit=sysop:move=sysop]

←Older revision

Revision as of 19:42, 7 January 2013

OCA at 19:42, 7 January 2013

2013-01-07T19:42:11Z

←Older revision		Revision as of 19:42, 7 January 2013
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3a9v.png\|left\|200px]]
-	[[Image:3a9v.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3a9v", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3a9v\| PDB=3a9v \| SCENE= }}		{{STRUCTURE_3a9v\| PDB=3a9v \| SCENE= }}

	===Crystal structures and enzymatic mechanisms of a Populus tomentosa 4-coumarate--CoA ligase===		===Crystal structures and enzymatic mechanisms of a Populus tomentosa 4-coumarate--CoA ligase===

		+	{{ABSTRACT_PUBMED_020841425}}

	==About this Structure==		==About this Structure==
-	~~3A9V~~ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Populus_tomentosa Populus tomentosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A9V OCA].	+	[[3a9v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Populus_tomentosa Populus tomentosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A9V OCA].
	[[Category: 4-coumarate--CoA ligase]]		[[Category: 4-coumarate--CoA ligase]]
	[[Category: Populus tomentosa]]		[[Category: Populus tomentosa]]
Line 22:		Line 16:
	[[Category: Ligase]]		[[Category: Ligase]]
	[[Category: Phenylpropanoid pathway]]		[[Category: Phenylpropanoid pathway]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Sep 10 13:55:22 2010''

OCA at 09:46, 10 September 2010

2010-09-10T09:46:52Z

←Older revision		Revision as of 09:46, 10 September 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3a9v.jpg\|left\|200px]]

-	The ~~entry 3a9v~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3a9v", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3a9v\| PDB=3a9v \| SCENE= }}

-	~~Authors: Hu, Y.~~	+	===Crystal structures and enzymatic mechanisms of a Populus tomentosa 4-coumarate--CoA ligase===

-	Description: Crystal structures and enzymatic mechanisms of a Populus tomentosa 4-coumarate--CoA ligase

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Dec 16 12~~:23:~~02 2009~~''	+	==About this Structure==
		+	3A9V is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Populus_tomentosa Populus tomentosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A9V OCA].
		+	[[Category: 4-coumarate--CoA ligase]]
		+	[[Category: Populus tomentosa]]
		+	[[Category: Hu, Y.]]
		+	[[Category: 4-coumate--coa ligase]]
		+	[[Category: 4cl]]
		+	[[Category: Ligase]]
		+	[[Category: Phenylpropanoid pathway]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Sep 10 13:55:22 2010''

←Older revision		Revision as of 10:22, 12 August 2020
Line 1:		Line 1:

	==Crystal structures and enzymatic mechanisms of a Populus tomentosa 4-coumarate--CoA ligase==		==Crystal structures and enzymatic mechanisms of a Populus tomentosa 4-coumarate--CoA ligase==
-	<StructureSection load='3a9v' size='340' side='right' caption='[[3a9v]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='3a9v' size='340' side='right'caption='[[3a9v]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3a9v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chinese_white_poplar Chinese white poplar]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A9V OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3A9V FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3a9v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chinese_white_poplar Chinese white poplar]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A9V OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3A9V FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a9u\|3a9u]], [[3ni2\|3ni2]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a9u\|3a9u]], [[3ni2\|3ni2]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-coumarate--CoA_ligase 4-coumarate--CoA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.2.1.12 6.2.1.12] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-coumarate--CoA_ligase 4-coumarate--CoA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.2.1.12 6.2.1.12] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3a9v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a9v OCA], [http://pdbe.org/3a9v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a9v RCSB], [http://www.ebi.ac.uk/pdbsum/3a9v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a9v ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3a9v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a9v OCA], [http://pdbe.org/3a9v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a9v RCSB], [http://www.ebi.ac.uk/pdbsum/3a9v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a9v ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 34:		Line 34:
	[[Category: 4-coumarate--CoA ligase]]		[[Category: 4-coumarate--CoA ligase]]
	[[Category: Chinese white poplar]]		[[Category: Chinese white poplar]]
		+	[[Category: Large Structures]]
	[[Category: Hu, Y]]		[[Category: Hu, Y]]
	[[Category: 4-coumate--coa ligase]]		[[Category: 4-coumate--coa ligase]]
	[[Category: Ligase]]		[[Category: Ligase]]
	[[Category: Phenylpropanoid pathway]]		[[Category: Phenylpropanoid pathway]]