3ak1 - Revision history

OCA at 15:47, 4 October 2023

2023-10-04T15:47:30Z

←Older revision		Revision as of 15:47, 4 October 2023
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	<StructureSection load='3ak1' size='340' side='right'caption='[[3ak1]], [[Resolution\|resolution]] 1.57Å' scene=''>		<StructureSection load='3ak1' size='340' side='right'caption='[[3ak1]], [[Resolution\|resolution]] 1.57Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ak1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Aerpe Aerpe~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AK1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AK1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ak1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Aeropyrum_pernix_K1 Aeropyrum pernix K1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AK1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AK1 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=EDO:1~~,~~2-ETHANEDIOL'>EDO</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.57Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>~~[[~~Related_structure~~\|~~Related:~~]]~~</b></td><td class="sblockDat"><div style='overflow: auto~~; ~~max-height: 3em;'>[[3ak2\|3ak2]], [[3ak3\|3ak3]]</div>~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>APE0741 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id~~=272557 AERPE])</td></tr>~~	+
-	~~<tr id='activity'><td class~~="~~sblockLbl~~"><~~b>Activity:</b></td><td class~~=~~"sblockDat"><span class~~=~~'plainlinks'>[https~~:~~//en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase]~~, ~~with EC number [https://www.brenda~~-~~enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ak1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ak1 OCA], [https://pdbe.org/3ak1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ak1 RCSB], [https://www.ebi.ac.uk/pdbsum/3ak1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ak1 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ak1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ak1 OCA], [https://pdbe.org/3ak1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ak1 RCSB], [https://www.ebi.ac.uk/pdbsum/3ak1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ak1 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/SODF_AERPE SODF_AERPE]] Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.	+	[https://www.uniprot.org/uniprot/SODF_AERPE SODF_AERPE] Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 28:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Aerpe~~]]	+	[[Category: Aeropyrum pernix K1]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Superoxide dismutase]]~~	+	[[Category: Nakamura T]]
-	[[Category: Nakamura, T]]	+	[[Category: Uegaki K]]
-	[[Category: Uegaki, K]]	+
-	~~[[Category: Cambialistic]]~~	+
-	~~[[Category: Oxidoreductase~~]]	+

OCA at 14:55, 29 December 2021

2021-12-29T14:55:14Z

←Older revision		Revision as of 14:55, 29 December 2021
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	==Superoxide dismutase from Aeropyrum pernix K1, apo-form==		==Superoxide dismutase from Aeropyrum pernix K1, apo-form==
-	<StructureSection load='3ak1' size='340' side='right' caption='[[3ak1]], [[Resolution\|resolution]] 1.57Å' scene=''>	+	<StructureSection load='3ak1' size='340' side='right'caption='[[3ak1]], [[Resolution\|resolution]] 1.57Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ak1]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Aerpe Aerpe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AK1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3AK1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ak1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Aerpe Aerpe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AK1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AK1 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3ak2\|3ak2]], [[3ak3\|3ak3]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3ak2\|3ak2]], [[3ak3\|3ak3]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APE0741 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272557 AERPE])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APE0741 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272557 AERPE])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ak1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ak1 OCA], [~~http~~://pdbe.org/3ak1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3ak1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3ak1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3ak1 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ak1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ak1 OCA], [https://pdbe.org/3ak1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ak1 RCSB], [https://www.ebi.ac.uk/pdbsum/3ak1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ak1 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/SODF_AERPE SODF_AERPE]] Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.	+	[[https://www.uniprot.org/uniprot/SODF_AERPE SODF_AERPE]] Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 23:

	==See Also==		==See Also==
-	*[[Superoxide ~~Dismutase~~\|Superoxide ~~Dismutase~~]]	+	*[[Superoxide dismutase 3D structures\|Superoxide dismutase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Aerpe]]		[[Category: Aerpe]]
		+	[[Category: Large Structures]]
	[[Category: Superoxide dismutase]]		[[Category: Superoxide dismutase]]
	[[Category: Nakamura, T]]		[[Category: Nakamura, T]]

OCA at 06:06, 5 August 2016

2016-08-05T06:06:54Z

←Older revision		Revision as of 06:06, 5 August 2016
Line 1:		Line 1:
		+
	==Superoxide dismutase from Aeropyrum pernix K1, apo-form==		==Superoxide dismutase from Aeropyrum pernix K1, apo-form==
	<StructureSection load='3ak1' size='340' side='right' caption='[[3ak1]], [[Resolution\|resolution]] 1.57Å' scene=''>		<StructureSection load='3ak1' size='340' side='right' caption='[[3ak1]], [[Resolution\|resolution]] 1.57Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ak1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Aeropyrum_pernix Aeropyrum pernix~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AK1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AK1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ak1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Aerpe Aerpe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AK1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AK1 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3ak2\|3ak2]], [[3ak3\|3ak3]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3ak2\|3ak2]], [[3ak3\|3ak3]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APE0741 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~56636 Aeropyrum pernix~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APE0741 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272557 AERPE])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ak1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ak1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ak1 RCSB], [http://www.ebi.ac.uk/pdbsum/3ak1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ak1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ak1 OCA], [http://pdbe.org/3ak1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ak1 RCSB], [http://www.ebi.ac.uk/pdbsum/3ak1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ak1 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3ak1" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 26:		Line 28:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Aeropyrum pernix~~]]	+	[[Category: Aerpe]]
	[[Category: Superoxide dismutase]]		[[Category: Superoxide dismutase]]
	[[Category: Nakamura, T]]		[[Category: Nakamura, T]]

OCA at 16:23, 25 December 2014

2014-12-25T16:23:55Z

←Older revision		Revision as of 16:23, 25 December 2014
Line 9:		Line 9:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ak1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ak1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ak1 RCSB], [http://www.ebi.ac.uk/pdbsum/3ak1 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ak1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ak1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ak1 RCSB], [http://www.ebi.ac.uk/pdbsum/3ak1 PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/SODF_AERPE SODF_AERPE]] Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 26:		Line 28:
	[[Category: Aeropyrum pernix]]		[[Category: Aeropyrum pernix]]
	[[Category: Superoxide dismutase]]		[[Category: Superoxide dismutase]]
-	[[Category: Nakamura, T.]]	+	[[Category: Nakamura, T]]
-	[[Category: Uegaki, K.]]	+	[[Category: Uegaki, K]]
	[[Category: Cambialistic]]		[[Category: Cambialistic]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
-	[[Category: Superoxide dismutase]]

OCA at 09:24, 5 November 2014

2014-11-05T09:24:40Z

←Older revision		Revision as of 09:24, 5 November 2014
Line 1:		Line 1:
-	[[~~Image:~~3ak1.~~png~~\|~~left~~\|~~200px~~]]	+	==Superoxide dismutase from Aeropyrum pernix K1, apo-form==
		+	<StructureSection load='3ak1' size='340' side='right' caption='[[3ak1]], [[Resolution\|resolution]] 1.57Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3ak1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AK1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AK1 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3ak2\|3ak2]], [[3ak3\|3ak3]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APE0741 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=56636 Aeropyrum pernix])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ak1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ak1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ak1 RCSB], [http://www.ebi.ac.uk/pdbsum/3ak1 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Aeropyrum pernix K1, an aerobic hyperthermophilic archaeon, produces a cambialistic superoxide dismutase that is active in the presence of either of Mn or Fe. The crystal structures of the superoxide dismutase from A. pernix in the apo, Mn-bound and Fe-bound forms were determined at resolutions of 1.56, 1.35 and 1.48 A, respectively. The overall structure consisted of a compact homotetramer. Analytical ultracentrifugation was used to confirm the tetrameric association in solution. In the Mn-bound form, the metal was in trigonal bipyramidal coordination with five ligands: four side chain atoms and a water oxygen. One aspartate and two histidine side chains ligated to the central metal on the equatorial plane. In the Fe-bound form, an additional water molecule was observed between the two histidines on the equatorial plane and the metal was in octahedral coordination with six ligands. The additional water occupied the postulated superoxide binding site. The thermal stability of the enzyme was compared with superoxide dismutase from Thermus thermophilus, a thermophilic bacterium, which contained fewer ion pairs. In aqueous solution, the stabilities of the two enzymes were almost identical but, when the solution contained ethylene glycol or ethanol, the A. pernix enzyme had significantly higher thermal stability than the enzyme from T. thermophilus. This suggests that dominant ion pairs make A. pernix superoxide dismutase tolerant to organic media. Structured digital abstract * MINT-8075688: Superoxide dismutase (uniprotkb:Q9Y8H8) and Superoxide dismutase (uniprotkb:Q9Y8H8) bind (MI:0407) by cosedimentation in solution (MI:0028) * MINT-8075667: Superoxide dismutase (uniprotkb:Q9Y8H8) and Superoxide dismutase (uniprotkb:Q9Y8H8) bind (MI:0407) by x-ray crystallography (MI:0114) * MINT-8075678: Superoxide dismutase (uniprotkb:Q9Y8H8) and Superoxide dismutase (uniprotkb:Q9Y8H8) bind (MI:0407) by molecular sieving (MI:0071).

-	~~{{STRUCTURE_3ak1\| PDB=3ak1 \| SCENE= }}~~	+	Crystal structure of the cambialistic superoxide dismutase from Aeropyrum pernix K1 - insights into the enzyme mechanism and stability.,Nakamura T, Torikai K, Uegaki K, Morita J, Machida K, Suzuki A, Kawata Y FEBS J. 2010 Dec 7. doi: 10.1111/j.1742-4658.2010.07977.x. PMID:21182595<ref>PMID:21182595</ref>

-	~~===Superoxide dismutase from Aeropyrum pernix K1~~, ~~apo-form===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_21182595}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3ak1]] is~~ a ~~4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Aeropyrum_pernix Aeropyrum pernix]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3AK1 OCA].~~	+

	==See Also==		==See Also==
	*[[Superoxide Dismutase\|Superoxide Dismutase]]		*[[Superoxide Dismutase\|Superoxide Dismutase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:021182595<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Aeropyrum pernix]]		[[Category: Aeropyrum pernix]]
	[[Category: Superoxide dismutase]]		[[Category: Superoxide dismutase]]

OCA at 18:52, 20 October 2012

2012-10-20T18:52:01Z

←Older revision		Revision as of 18:52, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3ak1]] is a 4 chain structure ~~of [[Superoxide Dismutase]]~~ with sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AK1 OCA].	+	[[3ak1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AK1 OCA].

	==See Also==		==See Also==

OCA at 05:31, 27 July 2012

2012-07-27T05:31:03Z

←Older revision		Revision as of 05:31, 27 July 2012
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	[[Image:3ak1.png\|left\|200px]]		[[Image:3ak1.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3ak1", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3ak1\| PDB=3ak1 \| SCENE= }}		{{STRUCTURE_3ak1\| PDB=3ak1 \| SCENE= }}

	===Superoxide dismutase from Aeropyrum pernix K1, apo-form===		===Superoxide dismutase from Aeropyrum pernix K1, apo-form===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_21182595}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 21182595 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_21182595}}		{{ABSTRACT_PUBMED_21182595}}

	==About this Structure==		==About this Structure==
-	[[3ak1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AK1 OCA].	+	[[3ak1]] is a 4 chain structure of [[Superoxide Dismutase]] with sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AK1 OCA].
		+
		+	==See Also==
		+	*[[Superoxide Dismutase\|Superoxide Dismutase]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~21182595~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:021182595</ref><references group="xtra"/>
	[[Category: Aeropyrum pernix]]		[[Category: Aeropyrum pernix]]
	[[Category: Superoxide dismutase]]		[[Category: Superoxide dismutase]]
	[[Category: Nakamura, T.]]		[[Category: Nakamura, T.]]
	[[Category: Uegaki, K.]]		[[Category: Uegaki, K.]]
		+	[[Category: Cambialistic]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Superoxide dismutase]]

OCA at 09:22, 23 February 2011

2011-02-23T09:22:55Z

←Older revision		Revision as of 09:22, 23 February 2011
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-	[[Image:3ak1.~~jpg~~\|left\|200px]]	+	[[Image:3ak1.png\|left\|200px]]

	<!--		<!--

OCA: Protected "3ak1" [edit=sysop:move=sysop]

2011-02-02T06:27:42Z

Protected "3ak1" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:27, 2 February 2011

OCA at 06:27, 2 February 2011

2011-02-02T06:27:40Z

←Older revision		Revision as of 06:27, 2 February 2011
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-	~~'''Unreleased structure'''~~	+	[[Image:3ak1.jpg\|left\|200px]]

-	The ~~entry 3ak1~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3ak1", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3ak1\| PDB=3ak1 \| SCENE= }}

-	~~Authors: Nakamura~~, ~~T., Uegaki, K.~~	+	===Superoxide dismutase from Aeropyrum pernix K1, apo-form===

-	Description: Superoxide dismutase from Aeropyrum pernix K1, apo-form

-	~~''Page seeded by~~ [http://oca.weizmann.ac.il/oca OCA ] ~~on Wed Aug 4 08~~:42:~~26 2010''~~	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_21182595}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 21182595 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_21182595}}
		+
		+	==About this Structure==
		+	[[3ak1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AK1 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:21182595</ref><references group="xtra"/>
		+	[[Category: Aeropyrum pernix]]
		+	[[Category: Superoxide dismutase]]
		+	[[Category: Nakamura, T.]]
		+	[[Category: Uegaki, K.]]