3b40 - Revision history

OCA at 09:27, 21 February 2024

2024-02-21T09:27:12Z

←Older revision		Revision as of 09:27, 21 February 2024
Line 1:		Line 1:

	==Crystal structure of the probable dipeptidase PvdM from Pseudomonas aeruginosa==		==Crystal structure of the probable dipeptidase PvdM from Pseudomonas aeruginosa==
-	<StructureSection load='3b40' size='340' side='right'caption='[[3b40]]' scene=''>	+	<StructureSection load='3b40' size='340' side='right'caption='[[3b40]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B40 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B40 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3b40]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B40 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B40 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b40 OCA], [https://pdbe.org/3b40 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b40 RCSB], [https://www.ebi.ac.uk/pdbsum/3b40 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b40 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3b40 TOPSAN]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b40 OCA], [https://pdbe.org/3b40 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b40 RCSB], [https://www.ebi.ac.uk/pdbsum/3b40 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b40 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3b40 TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q5DIQ1_PSEAI Q5DIQ1_PSEAI]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 19:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Pseudomonas aeruginosa]]
	[[Category: Almo SC]]		[[Category: Almo SC]]
	[[Category: Bain KT]]		[[Category: Bain KT]]

OCA at 18:53, 20 October 2021

2021-10-20T18:53:21Z

←Older revision		Revision as of 18:53, 20 October 2021
Line 1:		Line 1:

	==Crystal structure of the probable dipeptidase PvdM from Pseudomonas aeruginosa==		==Crystal structure of the probable dipeptidase PvdM from Pseudomonas aeruginosa==
-	<StructureSection load='3b40' size='340' side='right' caption='[[3b40]]~~, [[Resolution\|resolution]] 2.00Å~~' scene=''>	+	<StructureSection load='3b40' size='340' side='right'caption='[[3b40]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>~~[[3b40]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B40 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3B40 FirstGlance]. <br>	+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B40 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B40 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b40 OCA], [https://pdbe.org/3b40 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b40 RCSB], [https://www.ebi.ac.uk/pdbsum/3b40 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b40 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3b40 TOPSAN]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pvdM, PA2393 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3b40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b40 OCA], [~~http~~://pdbe.org/3b40 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3b40 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3b40 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3b40 ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/3b40 TOPSAN]</span></td></tr>	+
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 20:		Line 18:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Almo~~, S C~~]]	+	[[Category: Large Structures]]
-	[[Category: Bain~~, K T~~]]	+	[[Category: Almo SC]]
-	[[Category: Bonanno~~, J B~~]]	+	[[Category: Bain KT]]
-	[[Category: Burley~~, S K~~]]	+	[[Category: Bonanno JB]]
-	[[Category: Dickey, M]]	+	[[Category: Burley SK]]
-	[[Category: Fong, R]]	+	[[Category: Dickey M]]
-	[[Category: Mendoza, M]]	+	[[Category: Fong R]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Mendoza M]]
-	[[Category: Patskovsky, Y]]	+	[[Category: Patskovsky Y]]
-	[[Category: Sauder~~, J M~~]]	+	[[Category: Sauder JM]]
-	[[Category: Smith, D]]	+	[[Category: Smith D]]
-	[[Category: Wasserman, S]]	+	[[Category: Wasserman S]]
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: PSI, Protein structure initiative~~]]	+

OCA at 08:35, 14 November 2018

2018-11-14T08:35:31Z

←Older revision		Revision as of 08:35, 14 November 2018
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b4/3b40_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b4/3b40_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 07:55, 25 October 2017

2017-10-25T07:55:12Z

←Older revision		Revision as of 07:55, 25 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of the probable dipeptidase PvdM from Pseudomonas aeruginosa==		==Crystal structure of the probable dipeptidase PvdM from Pseudomonas aeruginosa==
	<StructureSection load='3b40' size='340' side='right' caption='[[3b40]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3b40' size='340' side='right' caption='[[3b40]], [[Resolution\|resolution]] 2.00Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pvdM, PA2393 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pvdM, PA2393 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b40 OCA], [http://pdbe.org/3b40 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3b40 RCSB], [http://www.ebi.ac.uk/pdbsum/3b40 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3b40 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b40 OCA], [http://pdbe.org/3b40 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3b40 RCSB], [http://www.ebi.ac.uk/pdbsum/3b40 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3b40 ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/3b40 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 00:30, 8 February 2016

2016-02-08T00:30:05Z

←Older revision		Revision as of 00:30, 8 February 2016
Line 2:		Line 2:
	<StructureSection load='3b40' size='340' side='right' caption='[[3b40]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3b40' size='340' side='right' caption='[[3b40]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3b40]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pseudomonas_aeruginosa Pseudomonas aeruginosa~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B40 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3B40 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3b40]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B40 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3B40 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pvdM, PA2393 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 ~~Pseudomonas aeruginosa~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pvdM, PA2393 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b40 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3b40 RCSB], [http://www.ebi.ac.uk/pdbsum/3b40 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3b40 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b40 OCA], [http://pdbe.org/3b40 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3b40 RCSB], [http://www.ebi.ac.uk/pdbsum/3b40 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3b40 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3b40 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Pseudomonas aeruginosa]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]
	[[Category: Bain, K T]]		[[Category: Bain, K T]]

OCA at 13:21, 6 November 2014

2014-11-06T13:21:42Z

←Older revision		Revision as of 13:21, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3b40]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B40 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3B40 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3b40]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B40 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3B40 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pvdM, PA2393 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 Pseudomonas aeruginosa])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pvdM, PA2393 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 Pseudomonas aeruginosa])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b40 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3b40 RCSB], [http://www.ebi.ac.uk/pdbsum/3b40 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3b40 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b40 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3b40 RCSB], [http://www.ebi.ac.uk/pdbsum/3b40 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3b40 TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
-	[[Category: Almo, S C.]]	+	[[Category: Almo, S C]]
-	[[Category: Bain, K T.]]	+	[[Category: Bain, K T]]
-	[[Category: Bonanno, J B.]]	+	[[Category: Bonanno, J B]]
-	[[Category: Burley, S K.]]	+	[[Category: Burley, S K]]
-	[[Category: Dickey, M.]]	+	[[Category: Dickey, M]]
-	[[Category: Fong, R.]]	+	[[Category: Fong, R]]
-	[[Category: Mendoza, M~~.]]~~	+	[[Category: Mendoza, M]]
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]~~	+
-	~~[[Category: Patskovsky, Y.]]~~	+
-	~~[[Category: Sauder, J M.]]~~	+
-	~~[[Category: Smith, D.]]~~	+
-	~~[[Category: Wasserman, S.]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: New york sgx research center for structural genomic]]~~	+
-	~~[[Category: Nysgxrc]]~~	+
-	~~[[Category: Protein structure initiative]]~~	+
-	~~[[Category: Psi-2~~]]	+
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
		+	[[Category: Patskovsky, Y]]
		+	[[Category: Sauder, J M]]
		+	[[Category: Smith, D]]
		+	[[Category: Wasserman, S]]
		+	[[Category: Hydrolase]]
		+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
		+	[[Category: PSI, Protein structure initiative]]

OCA at 05:23, 2 October 2014

2014-10-02T05:23:29Z

←Older revision		Revision as of 05:23, 2 October 2014
Line 1:		Line 1:
-	~~[[Image:3b40.png\|left\|200px]]~~	+	==Crystal structure of the probable dipeptidase PvdM from Pseudomonas aeruginosa==
-		+	<StructureSection load='3b40' size='340' side='right' caption='[[3b40]], [[Resolution\|resolution]] 2.00Å' scene=''>
-	~~{{STRUCTURE_3b40\| PDB=3b40 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3b40]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B40 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3B40 FirstGlance]. <br>
-	===Crystal structure of the probable dipeptidase PvdM from Pseudomonas aeruginosa===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pvdM, PA2393 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 Pseudomonas aeruginosa])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b40 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3b40 RCSB], [http://www.ebi.ac.uk/pdbsum/3b40 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3b40 TOPSAN]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[3b40]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B40 OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b4/3b40_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
	[[Category: Almo, S C.]]		[[Category: Almo, S C.]]

OCA: Protected "3b40" [edit=sysop:move=sysop]

2013-01-07T20:04:20Z

Protected "3b40" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:04, 7 January 2013

OCA at 20:04, 7 January 2013

2013-01-07T20:04:15Z

←Older revision		Revision as of 20:04, 7 January 2013
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-	{{Seed}}
	[[Image:3b40.png\|left\|200px]]		[[Image:3b40.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_3b40\| PDB=3b40 \| SCENE= }}		{{STRUCTURE_3b40\| PDB=3b40 \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~3B40~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B40 OCA].	+	[[3b40]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B40 OCA].
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
	[[Category: Almo, S C.]]		[[Category: Almo, S C.]]
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	[[Category: Fong, R.]]		[[Category: Fong, R.]]
	[[Category: Mendoza, M.]]		[[Category: Mendoza, M.]]
-	[[Category: NYSGXRC, New York ~~Structural GenomiX~~ Research ~~Consortium~~.]]	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
	[[Category: Patskovsky, Y.]]		[[Category: Patskovsky, Y.]]
	[[Category: Sauder, J M.]]		[[Category: Sauder, J M.]]
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	[[Category: Wasserman, S.]]		[[Category: Wasserman, S.]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
-	[[Category: New york ~~structural genomix~~ research ~~consortium~~]]	+	[[Category: New york sgx research center for structural genomic]]
	[[Category: Nysgxrc]]		[[Category: Nysgxrc]]
	[[Category: Protein structure initiative]]		[[Category: Protein structure initiative]]
	[[Category: Psi-2]]		[[Category: Psi-2]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 13:50:51 2008''

OCA at 11:50, 16 November 2008

2008-11-16T11:50:53Z

←Older revision		Revision as of 11:50, 16 November 2008
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	==About this Structure==		==About this Structure==
-	3B40 is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B40 OCA].	+	3B40 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B40 OCA].
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
-	[[Category: Single protein]]
	[[Category: Almo, S C.]]		[[Category: Almo, S C.]]
	[[Category: Bain, K T.]]		[[Category: Bain, K T.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun ~~Sep 28 20~~:40:19 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 13:50:51 2008''