3bem - Revision history

OCA at 06:51, 25 January 2023

2023-01-25T06:51:42Z

←Older revision		Revision as of 06:51, 25 January 2023
Line 3:		Line 3:
	<StructureSection load='3bem' size='340' side='right'caption='[[3bem]], [[Resolution\|resolution]] 1.65Å' scene=''>		<StructureSection load='3bem' size='340' side='right'caption='[[3bem]], [[Resolution\|resolution]] 1.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3bem]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"vibrio_subtilis"_ehrenberg_1835 "vibrio~~ subtilis~~" ehrenberg 1835~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BEM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3bem]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BEM FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>~~	+
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">2632848, ydfN, BSU05480 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bem OCA], [https://pdbe.org/3bem PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bem RCSB], [https://www.ebi.ac.uk/pdbsum/3bem PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bem ProSAT], [https://www.topsan.org/Proteins/JCSG/3bem TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bem OCA], [https://pdbe.org/3bem PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bem RCSB], [https://www.ebi.ac.uk/pdbsum/3bem PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bem ProSAT], [https://www.topsan.org/Proteins/JCSG/3bem TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/MHQN_BACSU MHQN_BACSU]] Putative nitroreductase that may contribute to the degradation of aromatic compounds.	+	[https://www.uniprot.org/uniprot/MHQN_BACSU MHQN_BACSU] Putative nitroreductase that may contribute to the degradation of aromatic compounds.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Vibrio~~ subtilis ~~ehrenberg 1835~~]]	+	[[Category: Bacillus subtilis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Structural genomic]]
-	[[Category: Flavoprotein]]
-	[[Category: Fmn]]
-	[[Category: Jcsg]]
-	[[Category: Nad]]
-	[[Category: Nadp]]
-	[[Category: Oxidoreductase]]
-	[[Category: PSI, Protein structure initiative]]
-	[[Category: Putative nitroreductase ydfn]]

OCA at 18:57, 20 October 2021

2021-10-20T18:57:02Z

←Older revision		Revision as of 18:57, 20 October 2021
Line 3:		Line 3:
	<StructureSection load='3bem' size='340' side='right'caption='[[3bem]], [[Resolution\|resolution]] 1.65Å' scene=''>		<StructureSection load='3bem' size='340' side='right'caption='[[3bem]], [[Resolution\|resolution]] 1.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3bem]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3BEM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3bem]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BEM FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">2632848, ydfN, BSU05480 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">2632848, ydfN, BSU05480 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3bem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bem OCA], [~~http~~://pdbe.org/3bem PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3bem RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3bem PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3bem ProSAT], [~~http~~://www.topsan.org/Proteins/JCSG/3bem TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bem OCA], [https://pdbe.org/3bem PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bem RCSB], [https://www.ebi.ac.uk/pdbsum/3bem PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bem ProSAT], [https://www.topsan.org/Proteins/JCSG/3bem TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/MHQN_BACSU MHQN_BACSU]] Putative nitroreductase that may contribute to the degradation of aromatic compounds.	+	[[https://www.uniprot.org/uniprot/MHQN_BACSU MHQN_BACSU]] Putative nitroreductase that may contribute to the degradation of aromatic compounds.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 07:48, 24 July 2019

2019-07-24T07:48:46Z

←Older revision		Revision as of 07:48, 24 July 2019
Line 1:		Line 1:

	==Crystal structure of putative nitroreductase ydfN (2632848) from Bacillus subtilis at 1.65 A resolution==		==Crystal structure of putative nitroreductase ydfN (2632848) from Bacillus subtilis at 1.65 A resolution==
-	<StructureSection load='3bem' size='340' side='right' caption='[[3bem]], [[Resolution\|resolution]] 1.65Å' scene=''>	+	<StructureSection load='3bem' size='340' side='right'caption='[[3bem]], [[Resolution\|resolution]] 1.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3bem]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"~~bacillus_globigii~~"~~_migula_1900~~ "~~bacillus globigii~~" ~~migula 1900~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BEM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3bem]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BEM FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">2632848, ydfN, BSU05480 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "~~Bacillus globigii~~" ~~Migula 1900~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">2632848, ydfN, BSU05480 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bem OCA], [http://pdbe.org/3bem PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bem RCSB], [http://www.ebi.ac.uk/pdbsum/3bem PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3bem ProSAT], [http://www.topsan.org/Proteins/JCSG/3bem TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bem OCA], [http://pdbe.org/3bem PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bem RCSB], [http://www.ebi.ac.uk/pdbsum/3bem PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3bem ProSAT], [http://www.topsan.org/Proteins/JCSG/3bem TOPSAN]</span></td></tr>
	</table>		</table>
Line 15:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/be/3bem_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/be/3bem_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 23:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus globigii migula 1900~~]]	+	[[Category: Vibrio subtilis ehrenberg 1835]]
		+	[[Category: Large Structures]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Flavoprotein]]		[[Category: Flavoprotein]]

OCA at 08:01, 25 October 2017

2017-10-25T08:01:15Z

←Older revision		Revision as of 08:01, 25 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of putative nitroreductase ydfN (2632848) from Bacillus subtilis at 1.65 A resolution==		==Crystal structure of putative nitroreductase ydfN (2632848) from Bacillus subtilis at 1.65 A resolution==
	<StructureSection load='3bem' size='340' side='right' caption='[[3bem]], [[Resolution\|resolution]] 1.65Å' scene=''>		<StructureSection load='3bem' size='340' side='right' caption='[[3bem]], [[Resolution\|resolution]] 1.65Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">2632848, ydfN, BSU05480 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">2632848, ydfN, BSU05480 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bem OCA], [http://pdbe.org/3bem PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bem RCSB], [http://www.ebi.ac.uk/pdbsum/3bem PDBsum], [http://www.topsan.org/Proteins/JCSG/3bem TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bem OCA], [http://pdbe.org/3bem PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bem RCSB], [http://www.ebi.ac.uk/pdbsum/3bem PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3bem ProSAT], [http://www.topsan.org/Proteins/JCSG/3bem TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 21:34, 8 February 2016

2016-02-08T21:34:01Z

←Older revision		Revision as of 21:34, 8 February 2016
Line 2:		Line 2:
	<StructureSection load='3bem' size='340' side='right' caption='[[3bem]], [[Resolution\|resolution]] 1.65Å' scene=''>		<StructureSection load='3bem' size='340' side='right' caption='[[3bem]], [[Resolution\|resolution]] 1.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3bem]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacillus_subtilis Bacillus subtilis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BEM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3bem]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BEM FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">2632848, ydfN, BSU05480 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus ~~subtilis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">2632848, ydfN, BSU05480 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bem OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bem RCSB], [http://www.ebi.ac.uk/pdbsum/3bem PDBsum], [http://www.topsan.org/Proteins/JCSG/3bem TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bem OCA], [http://pdbe.org/3bem PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bem RCSB], [http://www.ebi.ac.uk/pdbsum/3bem PDBsum], [http://www.topsan.org/Proteins/JCSG/3bem TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~YDFN_BACSU YDFN_BACSU~~]] Putative nitroreductase that may contribute to the degradation of aromatic compounds ~~(Potential)~~.	+	[[http://www.uniprot.org/uniprot/MHQN_BACSU MHQN_BACSU]] Putative nitroreductase that may contribute to the degradation of aromatic compounds.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bem ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacillus ~~subtilis~~]]	+	[[Category: Bacillus globigii migula 1900]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Flavoprotein]]		[[Category: Flavoprotein]]

OCA at 02:17, 25 December 2014

2014-12-25T02:17:37Z

←Older revision		Revision as of 02:17, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3bem]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BEM FirstGlance]. <br>		<table><tr><td colspan='2'>[[3bem]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BEM FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">2632848, ydfN, BSU05480 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">2632848, ydfN, BSU05480 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bem OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bem RCSB], [http://www.ebi.ac.uk/pdbsum/3bem PDBsum], [http://www.topsan.org/Proteins/JCSG/3bem TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bem OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bem RCSB], [http://www.ebi.ac.uk/pdbsum/3bem PDBsum], [http://www.topsan.org/Proteins/JCSG/3bem TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/YDFN_BACSU YDFN_BACSU]] Putative nitroreductase that may contribute to the degradation of aromatic compounds (Potential).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
-	[[Category: ~~JCSG, Joint Center for~~ Structural ~~Genomics.]]~~	+	[[Category: Structural genomic]]
-	~~[[Category: 2632848~~]]	+
	[[Category: Flavoprotein]]		[[Category: Flavoprotein]]
	[[Category: Fmn]]		[[Category: Fmn]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
-	[[Category: Joint center for structural genomic]]
	[[Category: Nad]]		[[Category: Nad]]
	[[Category: Nadp]]		[[Category: Nadp]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi-2~~]]	+
	[[Category: Putative nitroreductase ydfn]]		[[Category: Putative nitroreductase ydfn]]
-	[[Category: Structural genomic]]

OCA at 20:59, 2 October 2014

2014-10-02T20:59:43Z

←Older revision		Revision as of 20:59, 2 October 2014
Line 1:		Line 1:
-	~~[[Image:3bem.png\|left\|200px]]~~	+	==Crystal structure of putative nitroreductase ydfN (2632848) from Bacillus subtilis at 1.65 A resolution==
-		+	<StructureSection load='3bem' size='340' side='right' caption='[[3bem]], [[Resolution\|resolution]] 1.65Å' scene=''>
-	~~{{STRUCTURE_3bem\| PDB=3bem \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3bem]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BEM FirstGlance]. <br>
-	===Crystal structure of putative nitroreductase ydfN (2632848) from Bacillus subtilis at 1.65 A resolution===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">2632848, ydfN, BSU05480 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bem OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bem RCSB], [http://www.ebi.ac.uk/pdbsum/3bem PDBsum], [http://www.topsan.org/Proteins/JCSG/3bem TOPSAN]</span></td></tr>
-	[[3bem]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEM OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/be/3bem_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]

OCA: Protected "3bem" [edit=sysop:move=sysop]

2013-01-07T22:51:18Z

Protected "3bem" [edit=sysop:move=sysop]

←Older revision

Revision as of 22:51, 7 January 2013

OCA at 22:51, 7 January 2013

2013-01-07T22:51:15Z

←Older revision		Revision as of 22:51, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:3bem.png\|left\|200px]]		[[Image:3bem.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3bem", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3bem\| PDB=3bem \| SCENE= }}		{{STRUCTURE_3bem\| PDB=3bem \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~3BEM~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEM OCA].	+	[[3bem]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEM OCA].
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
Line 29:		Line 22:
	[[Category: Putative nitroreductase ydfn]]		[[Category: Putative nitroreductase ydfn]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 18:06:42 2008''

OCA at 16:06, 16 November 2008

2008-11-16T16:06:44Z

←Older revision		Revision as of 16:06, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	3BEM is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEM OCA].	+	3BEM is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEM OCA].
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
-	[[Category: Single protein]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
	[[Category: 2632848]]		[[Category: 2632848]]
Line 31:		Line 30:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Sep 29 06~~:33:54 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 18:06:42 2008''