3bf4 - Revision history

OCA at 06:51, 25 January 2023

2023-01-25T06:51:43Z

←Older revision		Revision as of 06:51, 25 January 2023
Line 3:		Line 3:
	<StructureSection load='3bf4' size='340' side='right'caption='[[3bf4]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3bf4' size='340' side='right'caption='[[3bf4]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3bf4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Cuppj Cuppj~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BF4 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3bf4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cupriavidus_pinatubonensis_JMP134 Cupriavidus pinatubonensis JMP134]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BF4 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~</td></tr>~~	+
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_299883.1, Reut_B5694 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264198 CUPPJ])</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bf4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf4 OCA], [https://pdbe.org/3bf4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bf4 RCSB], [https://www.ebi.ac.uk/pdbsum/3bf4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bf4 ProSAT], [https://www.topsan.org/Proteins/JCSG/3bf4 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bf4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf4 OCA], [https://pdbe.org/3bf4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bf4 RCSB], [https://www.ebi.ac.uk/pdbsum/3bf4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bf4 ProSAT], [https://www.topsan.org/Proteins/JCSG/3bf4 TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q46P95_CUPPJ Q46P95_CUPPJ]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Cuppj~~]]	+	[[Category: Cupriavidus pinatubonensis JMP134]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Structural genomic]]
-	[[Category: Ferredoxin-like fold]]
-	[[Category: Jcsg]]
-	[[Category: PSI, Protein structure initiative]]
-	[[Category: Unknown function]]

OCA at 18:57, 20 October 2021

2021-10-20T18:57:14Z

←Older revision		Revision as of 18:57, 20 October 2021
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	<StructureSection load='3bf4' size='340' side='right'caption='[[3bf4]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3bf4' size='340' side='right'caption='[[3bf4]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3bf4]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Cupnj Cupnj~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF4 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3BF4 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3bf4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cuppj Cuppj]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BF4 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_299883.1, Reut_B5694 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264198 ~~CUPNJ~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_299883.1, Reut_B5694 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264198 CUPPJ])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3bf4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf4 OCA], [~~http~~://pdbe.org/3bf4 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3bf4 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3bf4 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3bf4 ProSAT], [~~http~~://www.topsan.org/Proteins/JCSG/3bf4 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bf4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf4 OCA], [https://pdbe.org/3bf4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bf4 RCSB], [https://www.ebi.ac.uk/pdbsum/3bf4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bf4 ProSAT], [https://www.topsan.org/Proteins/JCSG/3bf4 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Cupnj~~]]	+	[[Category: Cuppj]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 07:48, 24 July 2019

2019-07-24T07:48:47Z

←Older revision		Revision as of 07:48, 24 July 2019
Line 1:		Line 1:

	==Crystal structure of an ethd-like protein (reut_b5694) from ralstonia eutropha jmp134 at 2.10 A resolution==		==Crystal structure of an ethd-like protein (reut_b5694) from ralstonia eutropha jmp134 at 2.10 A resolution==
-	<StructureSection load='3bf4' size='340' side='right' caption='[[3bf4]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='3bf4' size='340' side='right'caption='[[3bf4]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3bf4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Cuppj Cuppj~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BF4 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3bf4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Cupnj Cupnj]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BF4 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_299883.1, Reut_B5694 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264198 ~~CUPPJ~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_299883.1, Reut_B5694 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264198 CUPNJ])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bf4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf4 OCA], [http://pdbe.org/3bf4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bf4 RCSB], [http://www.ebi.ac.uk/pdbsum/3bf4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3bf4 ProSAT], [http://www.topsan.org/Proteins/JCSG/3bf4 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bf4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf4 OCA], [http://pdbe.org/3bf4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bf4 RCSB], [http://www.ebi.ac.uk/pdbsum/3bf4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3bf4 ProSAT], [http://www.topsan.org/Proteins/JCSG/3bf4 TOPSAN]</span></td></tr>
	</table>		</table>
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bf/3bf4_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bf/3bf4_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Cuppj~~]]	+	[[Category: Cupnj]]
		+	[[Category: Large Structures]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Ferredoxin-like fold]]		[[Category: Ferredoxin-like fold]]

OCA at 08:01, 25 October 2017

2017-10-25T08:01:39Z

←Older revision		Revision as of 08:01, 25 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of an ethd-like protein (reut_b5694) from ralstonia eutropha jmp134 at 2.10 A resolution==		==Crystal structure of an ethd-like protein (reut_b5694) from ralstonia eutropha jmp134 at 2.10 A resolution==
	<StructureSection load='3bf4' size='340' side='right' caption='[[3bf4]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3bf4' size='340' side='right' caption='[[3bf4]], [[Resolution\|resolution]] 2.10Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_299883.1, Reut_B5694 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264198 CUPPJ])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_299883.1, Reut_B5694 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264198 CUPPJ])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bf4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf4 OCA], [http://pdbe.org/3bf4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bf4 RCSB], [http://www.ebi.ac.uk/pdbsum/3bf4 PDBsum], [http://www.topsan.org/Proteins/JCSG/3bf4 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bf4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf4 OCA], [http://pdbe.org/3bf4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bf4 RCSB], [http://www.ebi.ac.uk/pdbsum/3bf4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3bf4 ProSAT], [http://www.topsan.org/Proteins/JCSG/3bf4 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 17:21, 8 February 2016

2016-02-08T17:21:17Z

←Older revision		Revision as of 17:21, 8 February 2016
Line 2:		Line 2:
	<StructureSection load='3bf4' size='340' side='right' caption='[[3bf4]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3bf4' size='340' side='right' caption='[[3bf4]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3bf4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Ralstonia_eutropha_jmp134 Ralstonia eutropha jmp134~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BF4 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3bf4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Cuppj Cuppj]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BF4 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_299883.1, Reut_B5694 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264198 ~~Ralstonia eutropha JMP134~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_299883.1, Reut_B5694 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264198 CUPPJ])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bf4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bf4 RCSB], [http://www.ebi.ac.uk/pdbsum/3bf4 PDBsum], [http://www.topsan.org/Proteins/JCSG/3bf4 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bf4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf4 OCA], [http://pdbe.org/3bf4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bf4 RCSB], [http://www.ebi.ac.uk/pdbsum/3bf4 PDBsum], [http://www.topsan.org/Proteins/JCSG/3bf4 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bf4 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Ralstonia eutropha jmp134~~]]	+	[[Category: Cuppj]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Ferredoxin-like fold]]		[[Category: Ferredoxin-like fold]]

OCA at 00:57, 25 December 2014

2014-12-25T00:57:20Z

←Older revision		Revision as of 00:57, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3bf4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ralstonia_eutropha_jmp134 Ralstonia eutropha jmp134]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BF4 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3bf4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ralstonia_eutropha_jmp134 Ralstonia eutropha jmp134]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BF4 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_299883.1, Reut_B5694 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264198 Ralstonia eutropha JMP134])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_299883.1, Reut_B5694 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264198 Ralstonia eutropha JMP134])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bf4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bf4 RCSB], [http://www.ebi.ac.uk/pdbsum/3bf4 PDBsum], [http://www.topsan.org/Proteins/JCSG/3bf4 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bf4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bf4 RCSB], [http://www.ebi.ac.uk/pdbsum/3bf4 PDBsum], [http://www.topsan.org/Proteins/JCSG/3bf4 TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Ralstonia eutropha jmp134]]		[[Category: Ralstonia eutropha jmp134]]
-	[[Category: ~~JCSG, Joint Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
	[[Category: Ferredoxin-like fold]]		[[Category: Ferredoxin-like fold]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
-	[[Category: ~~Joint center for structural genomic]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi-2]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 21:28, 2 October 2014

2014-10-02T21:28:28Z

←Older revision		Revision as of 21:28, 2 October 2014
Line 1:		Line 1:
-	~~[[Image:3bf4.png\|left\|200px]]~~	+	==Crystal structure of an ethd-like protein (reut_b5694) from ralstonia eutropha jmp134 at 2.10 A resolution==
-		+	<StructureSection load='3bf4' size='340' side='right' caption='[[3bf4]], [[Resolution\|resolution]] 2.10Å' scene=''>
-	~~{{STRUCTURE_3bf4\| PDB=3bf4 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3bf4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ralstonia_eutropha_jmp134 Ralstonia eutropha jmp134]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BF4 FirstGlance]. <br>
-	===Crystal structure of an ethd-like protein (reut_b5694) from ralstonia eutropha jmp134 at 2.10 A resolution===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_299883.1, Reut_B5694 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264198 Ralstonia eutropha JMP134])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bf4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bf4 RCSB], [http://www.ebi.ac.uk/pdbsum/3bf4 PDBsum], [http://www.topsan.org/Proteins/JCSG/3bf4 TOPSAN]</span></td></tr>
-	[[3bf4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ralstonia_eutropha_jmp134 Ralstonia eutropha jmp134]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF4 OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bf/3bf4_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Ralstonia eutropha jmp134]]		[[Category: Ralstonia eutropha jmp134]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]

OCA at 13:33, 6 February 2013

2013-02-06T13:33:17Z

←Older revision		Revision as of 13:33, 6 February 2013
Line 1:		Line 1:
	[[Image:3bf4.png\|left\|200px]]		[[Image:3bf4.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3bf4", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3bf4\| PDB=3bf4 \| SCENE= }}		{{STRUCTURE_3bf4\| PDB=3bf4 \| SCENE= }}

Line 16:		Line 10:
	[[Category: Ralstonia eutropha jmp134]]		[[Category: Ralstonia eutropha jmp134]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
		+	[[Category: Ferredoxin-like fold]]
		+	[[Category: Jcsg]]
		+	[[Category: Joint center for structural genomic]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-2]]
		+	[[Category: Structural genomic]]
		+	[[Category: Unknown function]]

OCA: Protected "3bf4" [edit=sysop:move=sysop]

2011-03-23T06:10:24Z

Protected "3bf4" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:10, 23 March 2011

OCA at 06:10, 23 March 2011

2011-03-23T06:10:22Z

←Older revision		Revision as of 06:10, 23 March 2011
Line 1:		Line 1:
-	{{Seed}}
	[[Image:3bf4.png\|left\|200px]]		[[Image:3bf4.png\|left\|200px]]

Line 10:		Line 9:
	{{STRUCTURE_3bf4\| PDB=3bf4 \| SCENE= }}		{{STRUCTURE_3bf4\| PDB=3bf4 \| SCENE= }}

-	===Crystal structure of ~~EthD~~-like protein (~~YP_299883.1~~) from ~~Ralstonia~~ eutropha ~~JMP134~~ at 2.10 A resolution===	+	===Crystal structure of an ethd-like protein (reut_b5694) from ralstonia eutropha jmp134 at 2.10 A resolution===


	==About this Structure==		==About this Structure==
-	~~3BF4~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Ralstonia_eutropha_jmp134 Ralstonia eutropha jmp134]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF4 OCA].	+	[[3bf4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ralstonia_eutropha_jmp134 Ralstonia eutropha jmp134]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF4 OCA].
	[[Category: Ralstonia eutropha jmp134]]		[[Category: Ralstonia eutropha jmp134]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
-	[[Category: Ethd-like protein]]
-	[[Category: Jcsg]]
-	[[Category: Joint center for structural genomic]]
-	[[Category: Protein structure initiative]]
-	[[Category: Psi-2]]
-	[[Category: Structural genomic]]
-	[[Category: Unknown function]]
-	[[Category: Yp_299883 1]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:37:20 2008''