3cdk - Revision history

OCA at 12:26, 30 August 2023

2023-08-30T12:26:17Z

←Older revision		Revision as of 12:26, 30 August 2023
Line 3:		Line 3:
	<StructureSection load='3cdk' size='340' side='right'caption='[[3cdk]], [[Resolution\|resolution]] 2.59Å' scene=''>		<StructureSection load='3cdk' size='340' side='right'caption='[[3cdk]], [[Resolution\|resolution]] 2.59Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3cdk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"vibrio_subtilis"_ehrenberg_1835 "vibrio~~ subtilis~~" ehrenberg 1835~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CDK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3cdk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CDK FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>scoA, yxjD, BSU38990, N15K ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~1423~~ "~~Vibrio subtilis~~" ~~Ehrenberg 1835]), scoB, yxjE, BSU38980~~, ~~N15L (~~[~~https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.59Å</td></tr>
-	~~<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>~~[~~https://en.wikipedia.org/wiki/3-oxoacid_CoA-transferase 3-oxoacid CoA-transferase~~]~~, with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=~~2.~~8.3.5 2.8.3.5] </span>~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdk OCA], [https://pdbe.org/3cdk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cdk RCSB], [https://www.ebi.ac.uk/pdbsum/3cdk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cdk ProSAT], [https://www.topsan.org/Proteins/MCSG/3cdk TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdk OCA], [https://pdbe.org/3cdk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cdk RCSB], [https://www.ebi.ac.uk/pdbsum/3cdk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cdk ProSAT], [https://www.topsan.org/Proteins/MCSG/3cdk TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/SCOA_BACSU SCOA_BACSU]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Vibrio~~ subtilis ~~ehrenberg 1835]]~~	+	[[Category: Bacillus subtilis]]
-	~~[[Category: 3-oxoacid CoA-transferase~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Donnelly, M]]	+	[[Category: Donnelly M]]
-	[[Category: Eschenfeldt, W]]	+	[[Category: Eschenfeldt W]]
-	[[Category: Joachimiak, A]]	+	[[Category: Joachimiak A]]
-	[[Category: Kim, Y]]	+	[[Category: Kim Y]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Stols L]]
-	[[Category: Stols, L]]	+	[[Category: Zhou M]]
-	[[Category: Zhou, M]]	+
-	~~[[Category: Co-expressed complex]]~~	+
-	~~[[Category: Hetero-tetramer]]~~	+
-	~~[[Category: Mcsg]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 07:52, 27 January 2022

2022-01-27T07:52:17Z

←Older revision		Revision as of 07:52, 27 January 2022
Line 1:		Line 1:

	==Crystal structure of the co-expressed succinyl-CoA transferase A and B complex from Bacillus subtilis==		==Crystal structure of the co-expressed succinyl-CoA transferase A and B complex from Bacillus subtilis==
-	<StructureSection load='3cdk' size='340' side='right' caption='[[3cdk]], [[Resolution\|resolution]] 2.59Å' scene=''>	+	<StructureSection load='3cdk' size='340' side='right'caption='[[3cdk]], [[Resolution\|resolution]] 2.59Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3cdk]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDK OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3CDK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3cdk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CDK FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">scoA, yxjD, BSU38990, N15K ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835]), scoB, yxjE, BSU38980, N15L ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">scoA, yxjD, BSU38990, N15K ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835]), scoB, yxjE, BSU38980, N15L ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/3-oxoacid_CoA-transferase 3-oxoacid CoA-transferase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.3.5 2.8.3.5] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/3-oxoacid_CoA-transferase 3-oxoacid CoA-transferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.3.5 2.8.3.5] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3cdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdk OCA], [~~http~~://pdbe.org/3cdk PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3cdk RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3cdk PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3cdk ProSAT], [~~http~~://www.topsan.org/Proteins/MCSG/3cdk TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdk OCA], [https://pdbe.org/3cdk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cdk RCSB], [https://www.ebi.ac.uk/pdbsum/3cdk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cdk ProSAT], [https://www.topsan.org/Proteins/MCSG/3cdk TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 22:		Line 22:
	[[Category: Vibrio subtilis ehrenberg 1835]]		[[Category: Vibrio subtilis ehrenberg 1835]]
	[[Category: 3-oxoacid CoA-transferase]]		[[Category: 3-oxoacid CoA-transferase]]
		+	[[Category: Large Structures]]
	[[Category: Donnelly, M]]		[[Category: Donnelly, M]]
	[[Category: Eschenfeldt, W]]		[[Category: Eschenfeldt, W]]

OCA at 13:58, 7 November 2018

2018-11-07T13:58:00Z

←Older revision		Revision as of 13:58, 7 November 2018
Line 3:		Line 3:
	<StructureSection load='3cdk' size='340' side='right' caption='[[3cdk]], [[Resolution\|resolution]] 2.59Å' scene=''>		<StructureSection load='3cdk' size='340' side='right' caption='[[3cdk]], [[Resolution\|resolution]] 2.59Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3cdk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"~~bacillus_globigii~~"~~_migula_1900~~ "~~bacillus globigii~~" ~~migula 1900~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CDK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3cdk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CDK FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">scoA, yxjD, BSU38990, N15K ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "~~Bacillus globigii~~" ~~Migula 1900~~]), scoB, yxjE, BSU38980, N15L ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "~~Bacillus globigii~~" ~~Migula 1900~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">scoA, yxjD, BSU38990, N15K ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835]), scoB, yxjE, BSU38980, N15L ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-oxoacid_CoA-transferase 3-oxoacid CoA-transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.3.5 2.8.3.5] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-oxoacid_CoA-transferase 3-oxoacid CoA-transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.3.5 2.8.3.5] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdk OCA], [http://pdbe.org/3cdk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cdk RCSB], [http://www.ebi.ac.uk/pdbsum/3cdk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3cdk ProSAT], [http://www.topsan.org/Proteins/MCSG/3cdk TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdk OCA], [http://pdbe.org/3cdk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cdk RCSB], [http://www.ebi.ac.uk/pdbsum/3cdk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3cdk ProSAT], [http://www.topsan.org/Proteins/MCSG/3cdk TOPSAN]</span></td></tr>
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cd/3cdk_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cd/3cdk_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus globigii migula 1900~~]]	+	[[Category: Vibrio subtilis ehrenberg 1835]]
	[[Category: 3-oxoacid CoA-transferase]]		[[Category: 3-oxoacid CoA-transferase]]
	[[Category: Donnelly, M]]		[[Category: Donnelly, M]]

OCA at 18:26, 11 August 2016

2016-08-11T18:26:26Z

←Older revision		Revision as of 18:26, 11 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of the co-expressed succinyl-CoA transferase A and B complex from Bacillus subtilis==		==Crystal structure of the co-expressed succinyl-CoA transferase A and B complex from Bacillus subtilis==
	<StructureSection load='3cdk' size='340' side='right' caption='[[3cdk]], [[Resolution\|resolution]] 2.59Å' scene=''>		<StructureSection load='3cdk' size='340' side='right' caption='[[3cdk]], [[Resolution\|resolution]] 2.59Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3cdk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacillus_subtilis Bacillus subtilis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CDK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3cdk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CDK FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">scoA, yxjD, BSU38990, N15K ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus ~~subtilis~~]), scoB, yxjE, BSU38980, N15L ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus ~~subtilis~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">scoA, yxjD, BSU38990, N15K ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900]), scoB, yxjE, BSU38980, N15L ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-oxoacid_CoA-transferase 3-oxoacid CoA-transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.3.5 2.8.3.5] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-oxoacid_CoA-transferase 3-oxoacid CoA-transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.3.5 2.8.3.5] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3cdk RCSB], [http://www.ebi.ac.uk/pdbsum/3cdk PDBsum], [http://www.topsan.org/Proteins/MCSG/3cdk TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdk OCA], [http://pdbe.org/3cdk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cdk RCSB], [http://www.ebi.ac.uk/pdbsum/3cdk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3cdk ProSAT], [http://www.topsan.org/Proteins/MCSG/3cdk TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cdk ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacillus globigii migula 1900]]
	[[Category: 3-oxoacid CoA-transferase]]		[[Category: 3-oxoacid CoA-transferase]]
-	[[Category: Bacillus subtilis]]
	[[Category: Donnelly, M]]		[[Category: Donnelly, M]]
	[[Category: Eschenfeldt, W]]		[[Category: Eschenfeldt, W]]

OCA at 08:36, 20 January 2015

2015-01-20T08:36:27Z

←Older revision		Revision as of 08:36, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3cdk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CDK FirstGlance]. <br>		<table><tr><td colspan='2'>[[3cdk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CDK FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">scoA, yxjD, BSU38990, N15K ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis]), scoB, yxjE, BSU38980, N15L ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">scoA, yxjD, BSU38990, N15K ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis]), scoB, yxjE, BSU38980, N15L ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-oxoacid_CoA-transferase 3-oxoacid CoA-transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.3.5 2.8.3.5] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-oxoacid_CoA-transferase 3-oxoacid CoA-transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.3.5 2.8.3.5] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3cdk RCSB], [http://www.ebi.ac.uk/pdbsum/3cdk PDBsum], [http://www.topsan.org/Proteins/MCSG/3cdk TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3cdk RCSB], [http://www.ebi.ac.uk/pdbsum/3cdk PDBsum], [http://www.topsan.org/Proteins/MCSG/3cdk TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	[[Category: 3-oxoacid CoA-transferase]]		[[Category: 3-oxoacid CoA-transferase]]
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
-	[[Category: Donnelly, M.]]	+	[[Category: Donnelly, M]]
-	[[Category: Eschenfeldt, W.]]	+	[[Category: Eschenfeldt, W]]
-	[[Category: Joachimiak, A.]]	+	[[Category: Joachimiak, A]]
-	[[Category: Kim, Y.]]	+	[[Category: Kim, Y]]
-	[[Category: ~~MCSG, Midwest Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Stols, L.]]	+	[[Category: Stols, L]]
-	[[Category: Zhou, M.]]	+	[[Category: Zhou, M]]
	[[Category: Co-expressed complex]]		[[Category: Co-expressed complex]]
	[[Category: Hetero-tetramer]]		[[Category: Hetero-tetramer]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
-	[[Category: ~~Midwest center for structural genomic]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi-2]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 21:31, 2 October 2014

2014-10-02T21:31:34Z

←Older revision		Revision as of 21:31, 2 October 2014
Line 1:		Line 1:
-	~~[[Image:3cdk.png\|left\|200px]]~~	+	==Crystal structure of the co-expressed succinyl-CoA transferase A and B complex from Bacillus subtilis==
-		+	<StructureSection load='3cdk' size='340' side='right' caption='[[3cdk]], [[Resolution\|resolution]] 2.59Å' scene=''>
-	~~{{STRUCTURE_3cdk\| PDB=3cdk \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3cdk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CDK FirstGlance]. <br>
-	===Crystal structure of the co-expressed succinyl-CoA transferase A and B complex from Bacillus subtilis===	+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">scoA, yxjD, BSU38990, N15K ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis]), scoB, yxjE, BSU38980, N15L ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-oxoacid_CoA-transferase 3-oxoacid CoA-transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.3.5 2.8.3.5] </span></td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3cdk RCSB], [http://www.ebi.ac.uk/pdbsum/3cdk PDBsum], [http://www.topsan.org/Proteins/MCSG/3cdk TOPSAN]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[3cdk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDK OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cd/3cdk_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: 3-oxoacid CoA-transferase]]		[[Category: 3-oxoacid CoA-transferase]]
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]

OCA: Protected "3cdk" [edit=sysop:move=sysop]

2013-01-07T21:05:27Z

Protected "3cdk" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:05, 7 January 2013

OCA at 21:05, 7 January 2013

2013-01-07T21:05:25Z

←Older revision		Revision as of 21:05, 7 January 2013
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-	{{Seed}}
	[[Image:3cdk.png\|left\|200px]]		[[Image:3cdk.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3cdk", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3cdk\| PDB=3cdk \| SCENE= }}		{{STRUCTURE_3cdk\| PDB=3cdk \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~3CDK~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDK OCA].	+	[[3cdk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDK OCA].
	[[Category: 3-oxoacid CoA-transferase]]		[[Category: 3-oxoacid CoA-transferase]]
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
Line 32:		Line 25:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Transferase]]		[[Category: Transferase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:41:16 2008''

OCA at 13:41, 16 November 2008

2008-11-16T13:41:17Z

←Older revision		Revision as of 13:41, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	3CDK is a ~~[[Protein complex]]~~ structure of sequences from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDK OCA].	+	3CDK is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDK OCA].
	[[Category: 3-oxoacid CoA-transferase]]		[[Category: 3-oxoacid CoA-transferase]]
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
-	[[Category: Protein complex]]
	[[Category: Donnelly, M.]]		[[Category: Donnelly, M.]]
	[[Category: Eschenfeldt, W.]]		[[Category: Eschenfeldt, W.]]
Line 34:		Line 33:
	[[Category: Transferase]]		[[Category: Transferase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Sep 29 00~~:41:02 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:41:16 2008''

OCA at 21:41, 28 September 2008

2008-09-28T21:41:03Z

←Older revision		Revision as of 21:41, 28 September 2008
Line 1:		Line 1:
-	[[Image:3cdk.~~jpg~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:3cdk.png\|left\|200px]]

	<!--		<!--
Line 9:		Line 10:
	{{STRUCTURE_3cdk\| PDB=3cdk \| SCENE= }}		{{STRUCTURE_3cdk\| PDB=3cdk \| SCENE= }}

-	~~'''~~Crystal structure of the co-expressed succinyl-CoA transferase A and B complex from Bacillus subtilis~~'''~~	+	===Crystal structure of the co-expressed succinyl-CoA transferase A and B complex from Bacillus subtilis===


Line 32:		Line 33:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Transferase]]		[[Category: Transferase]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun May 4 21~~:37:15 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 00:41:02 2008''