3ckg - Revision history

OCA at 12:29, 30 August 2023

2023-08-30T12:29:41Z

←Older revision		Revision as of 12:29, 30 August 2023
Line 3:		Line 3:
	<StructureSection load='3ckg' size='340' side='right'caption='[[3ckg]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3ckg' size='340' side='right'caption='[[3ckg]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ckg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_35210 Atcc 35210~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CKG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CKG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ckg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Borreliella_burgdorferi Borreliella burgdorferi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CKG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CKG FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style~~=~~'overflow: auto; max-height: 3em;'~~>~~[[3cka\|3cka]], [[3ckf\|3ckf]]~~<~~/div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">ospA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=139 ATCC 35210])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ckg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ckg OCA], [https://pdbe.org/3ckg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ckg RCSB], [https://www.ebi.ac.uk/pdbsum/3ckg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ckg ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ckg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ckg OCA], [https://pdbe.org/3ckg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ckg RCSB], [https://www.ebi.ac.uk/pdbsum/3ckg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ckg ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q45040_BORBG Q45040_BORBG]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 35210~~]]	+	[[Category: Borreliella burgdorferi]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Koide, S]]	+	[[Category: Koide S]]
-	[[Category: Makabe, K]]	+	[[Category: Makabe K]]
-	~~[[Category: Beta-sheet]]~~	+
-	~~[[Category: Membrane protein~~]]	+

OCA at 19:10, 20 October 2021

2021-10-20T19:10:46Z

←Older revision		Revision as of 19:10, 20 October 2021
Line 1:		Line 1:

	==The crystal structure of OspA deletion mutant==		==The crystal structure of OspA deletion mutant==
-	<StructureSection load='3ckg' size='340' side='right' caption='[[3ckg]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='3ckg' size='340' side='right'caption='[[3ckg]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ckg]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_35210 Atcc 35210]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CKG OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3CKG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ckg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_35210 Atcc 35210]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CKG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CKG FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cka\|3cka]], [[3ckf\|3ckf]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3cka\|3cka]], [[3ckf\|3ckf]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ospA ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=139 ATCC 35210])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ospA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=139 ATCC 35210])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ckg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ckg OCA], [~~http~~://pdbe.org/3ckg PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3ckg RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3ckg PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3ckg ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ckg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ckg OCA], [https://pdbe.org/3ckg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ckg RCSB], [https://www.ebi.ac.uk/pdbsum/3ckg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ckg ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ck/3ckg_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ck/3ckg_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 28:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 3ckg" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3ckg" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Outer surface protein\|Outer surface protein]]
	== References ==		== References ==
	<references/>		<references/>
Line 33:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 35210]]		[[Category: Atcc 35210]]
		+	[[Category: Large Structures]]
	[[Category: Koide, S]]		[[Category: Koide, S]]
	[[Category: Makabe, K]]		[[Category: Makabe, K]]
	[[Category: Beta-sheet]]		[[Category: Beta-sheet]]
	[[Category: Membrane protein]]		[[Category: Membrane protein]]

OCA at 00:41, 16 November 2017

2017-11-16T00:41:11Z

←Older revision		Revision as of 00:41, 16 November 2017
Line 1:		Line 1:
		+
	==The crystal structure of OspA deletion mutant==		==The crystal structure of OspA deletion mutant==
	<StructureSection load='3ckg' size='340' side='right' caption='[[3ckg]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3ckg' size='340' side='right' caption='[[3ckg]], [[Resolution\|resolution]] 1.80Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cka\|3cka]], [[3ckf\|3ckf]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cka\|3cka]], [[3ckf\|3ckf]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ospA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=139 ATCC 35210])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ospA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=139 ATCC 35210])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ckg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ckg OCA], [http://pdbe.org/3ckg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ckg RCSB], [http://www.ebi.ac.uk/pdbsum/3ckg PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ckg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ckg OCA], [http://pdbe.org/3ckg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ckg RCSB], [http://www.ebi.ac.uk/pdbsum/3ckg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ckg ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 27:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 3ckg" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3ckg" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Outer surface protein\|Outer surface protein]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 16:32, 9 February 2016

2016-02-09T16:32:20Z

←Older revision		Revision as of 16:32, 9 February 2016
Line 2:		Line 2:
	<StructureSection load='3ckg' size='340' side='right' caption='[[3ckg]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3ckg' size='340' side='right' caption='[[3ckg]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ckg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Borrelia_burgdorferi Borrelia burgdorferi~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CKG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CKG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ckg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_35210 Atcc 35210]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CKG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CKG FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cka\|3cka]], [[3ckf\|3ckf]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cka\|3cka]], [[3ckf\|3ckf]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ospA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=139 ~~Borrelia burgdorferi~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ospA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=139 ATCC 35210])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ckg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ckg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ckg RCSB], [http://www.ebi.ac.uk/pdbsum/3ckg PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ckg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ckg OCA], [http://pdbe.org/3ckg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ckg RCSB], [http://www.ebi.ac.uk/pdbsum/3ckg PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ckg ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3ckg" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 33:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Borrelia burgdorferi~~]]	+	[[Category: Atcc 35210]]
	[[Category: Koide, S]]		[[Category: Koide, S]]
	[[Category: Makabe, K]]		[[Category: Makabe, K]]
	[[Category: Beta-sheet]]		[[Category: Beta-sheet]]
	[[Category: Membrane protein]]		[[Category: Membrane protein]]

OCA at 10:07, 20 January 2015

2015-01-20T10:07:15Z

←Older revision		Revision as of 10:07, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3ckg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Borrelia_burgdorferi Borrelia burgdorferi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CKG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CKG FirstGlance]. <br>		<table><tr><td colspan='2'>[[3ckg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Borrelia_burgdorferi Borrelia burgdorferi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CKG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CKG FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cka\|3cka]], [[3ckf\|3ckf]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cka\|3cka]], [[3ckf\|3ckf]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ospA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=139 Borrelia burgdorferi])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ospA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=139 Borrelia burgdorferi])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ckg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ckg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ckg RCSB], [http://www.ebi.ac.uk/pdbsum/3ckg PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ckg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ckg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ckg RCSB], [http://www.ebi.ac.uk/pdbsum/3ckg PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Borrelia burgdorferi]]		[[Category: Borrelia burgdorferi]]
-	[[Category: Koide, S.]]	+	[[Category: Koide, S]]
-	[[Category: Makabe, K.]]	+	[[Category: Makabe, K]]
	[[Category: Beta-sheet]]		[[Category: Beta-sheet]]
	[[Category: Membrane protein]]		[[Category: Membrane protein]]

OCA at 20:54, 2 October 2014

2014-10-02T20:54:57Z

←Older revision		Revision as of 20:54, 2 October 2014
Line 1:		Line 1:
-	[[~~Image:~~3ckg.~~png~~\|~~left~~\|200px]]	+	==The crystal structure of OspA deletion mutant==
		+	<StructureSection load='3ckg' size='340' side='right' caption='[[3ckg]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3ckg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Borrelia_burgdorferi Borrelia burgdorferi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CKG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CKG FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cka\|3cka]], [[3ckf\|3ckf]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ospA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=139 Borrelia burgdorferi])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ckg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ckg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ckg RCSB], [http://www.ebi.ac.uk/pdbsum/3ckg PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ck/3ckg_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Recent studies suggest the dominant role of main-chain H-bond formation in specifying beta-sheet topology. Its essentially sequence-independent nature implies a large degree of freedom in designing beta-sheet-based nanomaterials. Here we show rational design of beta-sheet face inversions by incremental deletions of beta-strands from the single-layer beta-sheet of Borrelia outer surface protein A. We show that a beta-sheet structure can be maintained when a large number of native contacts are removed and that one can design large-scale conformational transitions of a beta-sheet such as face inversion by exploiting the promiscuity of strand-strand interactions. High-resolution X-ray crystal structures confirmed the success of the design and supported the importance of main-chain H-bonds in determining beta-sheet topology. This work suggests a simple but effective strategy for designing and controlling nanomaterials based on beta-rich peptide self-assemblies.

-	~~{{STRUCTURE_3ckg\| PDB=3ckg \| SCENE= }}~~	+	The promiscuity of beta-strand pairing allows for rational design of beta-sheet face inversion.,Makabe K, Koide S J Am Chem Soc. 2008 Nov 5;130(44):14370-1. Epub 2008 Oct 9. PMID:18842042<ref>PMID:18842042</ref>

-	~~===The crystal structure~~ of ~~OspA deletion mutant===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

-	~~{{ABSTRACT_PUBMED_18842042}}~~	+	==See Also==
-		+	*[[Outer surface protein\|Outer surface protein]]
-	==~~About this Structure~~==	+	== References ==
-	[[~~3ckg~~]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Borrelia_burgdorferi Borrelia burgdorferi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CKG OCA].	+	<references/>
-		+	__TOC__
-	==~~Reference~~==	+	</StructureSection>
-	<~~ref group="xtra">PMID:018842042<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Borrelia burgdorferi]]		[[Category: Borrelia burgdorferi]]
	[[Category: Koide, S.]]		[[Category: Koide, S.]]

OCA: Protected "3ckg" [edit=sysop:move=sysop]

2013-01-07T19:19:07Z

Protected "3ckg" [edit=sysop:move=sysop]

←Older revision

Revision as of 19:19, 7 January 2013

OCA at 19:19, 7 January 2013

2013-01-07T19:19:03Z

←Older revision		Revision as of 19:19, 7 January 2013
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-	~~{{Seed}}~~	+	[[Image:3ckg.png\|left\|200px]]
-	[[Image:3ckg.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3ckg", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3ckg\| PDB=3ckg \| SCENE= }}		{{STRUCTURE_3ckg\| PDB=3ckg \| SCENE= }}

	===The crystal structure of OspA deletion mutant===		===The crystal structure of OspA deletion mutant===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_18842042}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 18842042 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_18842042}}		{{ABSTRACT_PUBMED_18842042}}

	==About this Structure==		==About this Structure==
-	~~3CKG~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Borrelia_burgdorferi Borrelia burgdorferi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CKG OCA].	+	[[3ckg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Borrelia_burgdorferi Borrelia burgdorferi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CKG OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~18842042~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:018842042</ref><references group="xtra"/>
	[[Category: Borrelia burgdorferi]]		[[Category: Borrelia burgdorferi]]
	[[Category: Koide, S.]]		[[Category: Koide, S.]]
Line 29:		Line 17:
	[[Category: Beta-sheet]]		[[Category: Beta-sheet]]
	[[Category: Membrane protein]]		[[Category: Membrane protein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 28 09:47:48 2009''

OCA at 07:47, 28 January 2009

2009-01-28T07:47:51Z

←Older revision		Revision as of 07:47, 28 January 2009
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3ckg.jpg\|left\|200px]]

-	The ~~entry 3ckg~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3ckg", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3ckg\| PDB=3ckg \| SCENE= }}

-	~~Authors: Makabe, K., Koide, S.~~	+	===The crystal structure of OspA deletion mutant===

-	Description: The crystal structure of OspA deletion mutant

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Fri Jul 11 13~~:03:~~50 2008~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_18842042}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 18842042 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_18842042}}
		+
		+	==About this Structure==
		+	3CKG is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Borrelia_burgdorferi Borrelia burgdorferi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CKG OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:18842042</ref><references group="xtra"/>
		+	[[Category: Borrelia burgdorferi]]
		+	[[Category: Koide, S.]]
		+	[[Category: Makabe, K.]]
		+	[[Category: Beta-sheet]]
		+	[[Category: Membrane protein]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 28 09:47:48 2009''

OCA at 10:03, 11 July 2008

2008-07-11T10:03:50Z

←Older revision		Revision as of 10:03, 11 July 2008
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3ckg is ON HOLD until ~~sometime in the future~~	+	The entry 3ckg is ON HOLD until Paper Publication

	Authors: Makabe, K., Koide, S.		Authors: Makabe, K., Koide, S.
Line 7:		Line 7:
	Description: The crystal structure of OspA deletion mutant		Description: The crystal structure of OspA deletion mutant

-		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Jul 11 13:03:50 2008''
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Jun~~ 11 09:32:23 2008''	+