3d3r - Revision history

OCA at 07:52, 2 February 2022

2022-02-02T07:52:44Z

←Older revision		Revision as of 07:52, 2 February 2022
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	==Crystal structure of the hydrogenase assembly chaperone HypC/HupF family protein from Shewanella oneidensis MR-1==		==Crystal structure of the hydrogenase assembly chaperone HypC/HupF family protein from Shewanella oneidensis MR-1==
-	<StructureSection load='3d3r' size='340' side='right' caption='[[3d3r]], [[Resolution\|resolution]] 1.85Å' scene=''>	+	<StructureSection load='3d3r' size='340' side='right'caption='[[3d3r]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3d3r]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Sheon Sheon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3R OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3D3R FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3d3r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sheon Sheon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D3R FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hypC, SO_2092 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=211586 SHEON])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hypC, SO_2092 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=211586 SHEON])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3d3r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d3r OCA], [~~http~~://pdbe.org/3d3r PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3d3r RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3d3r PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3d3r ProSAT], [~~http~~://www.topsan.org/Proteins/MCSG/3d3r TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d3r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d3r OCA], [https://pdbe.org/3d3r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d3r RCSB], [https://www.ebi.ac.uk/pdbsum/3d3r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d3r ProSAT], [https://www.topsan.org/Proteins/MCSG/3d3r TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Sheon]]		[[Category: Sheon]]
	[[Category: Edwards, A M]]		[[Category: Edwards, A M]]

OCA at 09:58, 14 November 2018

2018-11-14T09:58:40Z

←Older revision		Revision as of 09:58, 14 November 2018
Line 1:		Line 1:
		+
	==Crystal structure of the hydrogenase assembly chaperone HypC/HupF family protein from Shewanella oneidensis MR-1==		==Crystal structure of the hydrogenase assembly chaperone HypC/HupF family protein from Shewanella oneidensis MR-1==
	<StructureSection load='3d3r' size='340' side='right' caption='[[3d3r]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='3d3r' size='340' side='right' caption='[[3d3r]], [[Resolution\|resolution]] 1.85Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hypC, SO_2092 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=211586 SHEON])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hypC, SO_2092 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=211586 SHEON])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d3r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d3r OCA], [http://pdbe.org/3d3r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3d3r RCSB], [http://www.ebi.ac.uk/pdbsum/3d3r PDBsum], [http://www.topsan.org/Proteins/MCSG/3d3r TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d3r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d3r OCA], [http://pdbe.org/3d3r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3d3r RCSB], [http://www.ebi.ac.uk/pdbsum/3d3r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3d3r ProSAT], [http://www.topsan.org/Proteins/MCSG/3d3r TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d3/3d3r_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d3/3d3r_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 01:52, 9 February 2016

2016-02-09T01:52:03Z

←Older revision		Revision as of 01:52, 9 February 2016
Line 2:		Line 2:
	<StructureSection load='3d3r' size='340' side='right' caption='[[3d3r]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='3d3r' size='340' side='right' caption='[[3d3r]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3d3r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Shewanella_oneidensis Shewanella oneidensis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3D3R FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3d3r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Sheon Sheon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3D3R FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hypC, SO_2092 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~70863 Shewanella oneidensis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hypC, SO_2092 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=211586 SHEON])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d3r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d3r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3d3r RCSB], [http://www.ebi.ac.uk/pdbsum/3d3r PDBsum], [http://www.topsan.org/Proteins/MCSG/3d3r TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d3r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d3r OCA], [http://pdbe.org/3d3r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3d3r RCSB], [http://www.ebi.ac.uk/pdbsum/3d3r PDBsum], [http://www.topsan.org/Proteins/MCSG/3d3r TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d3r ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Shewanella oneidensis~~]]	+	[[Category: Sheon]]
	[[Category: Edwards, A M]]		[[Category: Edwards, A M]]
	[[Category: Joachimiak, A]]		[[Category: Joachimiak, A]]

OCA at 10:04, 25 January 2015

2015-01-25T10:04:49Z

←Older revision		Revision as of 10:04, 25 January 2015
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Shewanella oneidensis]]		[[Category: Shewanella oneidensis]]
-	[[Category: Edwards, A M.]]	+	[[Category: Edwards, A M]]
-	[[Category: Joachimiak, A.]]	+	[[Category: Joachimiak, A]]
-	[[Category: Kim, Y.]]	+	[[Category: Kim, Y]]
-	[[Category: ~~MCSG, Midwest Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Onopriyenko, O.]]	+	[[Category: Onopriyenko, O]]
-	[[Category: Savchenko, A.]]	+	[[Category: Savchenko, A]]
-	[[Category: Skarina, T.]]	+	[[Category: Skarina, T]]
	[[Category: Chaperone]]		[[Category: Chaperone]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
-	[[Category: ~~Midwest center for structural genomic]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi-2~~]]	+
	[[Category: Small beta-barrel]]		[[Category: Small beta-barrel]]
-	[[Category: Structural genomic]]

OCA at 09:30, 5 November 2014

2014-11-05T09:30:30Z

←Older revision		Revision as of 09:30, 5 November 2014
Line 1:		Line 1:
-	~~[[Image:3d3r.png\|left\|200px]]~~	+	==Crystal structure of the hydrogenase assembly chaperone HypC/HupF family protein from Shewanella oneidensis MR-1==
-		+	<StructureSection load='3d3r' size='340' side='right' caption='[[3d3r]], [[Resolution\|resolution]] 1.85Å' scene=''>
-	~~{{STRUCTURE_3d3r\| PDB=3d3r \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3d3r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3D3R FirstGlance]. <br>
-	===Crystal structure of the hydrogenase assembly chaperone HypC/HupF family protein from Shewanella oneidensis MR-1===	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hypC, SO_2092 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 Shewanella oneidensis])</td></tr>
-		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d3r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d3r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3d3r RCSB], [http://www.ebi.ac.uk/pdbsum/3d3r PDBsum], [http://www.topsan.org/Proteins/MCSG/3d3r TOPSAN]</span></td></tr>
-	==~~About this Structure~~==	+	</table>
-	[[3d3r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3R OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d3/3d3r_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Shewanella oneidensis]]		[[Category: Shewanella oneidensis]]
	[[Category: Edwards, A M.]]		[[Category: Edwards, A M.]]

OCA: Protected "3d3r" [edit=sysop:move=sysop]

2013-01-07T19:04:33Z

Protected "3d3r" [edit=sysop:move=sysop]

←Older revision

Revision as of 19:04, 7 January 2013

OCA at 19:04, 7 January 2013

2013-01-07T19:04:31Z

←Older revision		Revision as of 19:04, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:3d3r.png\|left\|200px]]		[[Image:3d3r.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3d3r", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3d3r\| PDB=3d3r \| SCENE= }}		{{STRUCTURE_3d3r\| PDB=3d3r \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~3D3R~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/~~Bacteria Bacteria~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3R OCA].	+	[[3d3r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3R OCA].
-	[[Category: ~~Bacteria~~]]	+	[[Category: Shewanella oneidensis]]
	[[Category: Edwards, A M.]]		[[Category: Edwards, A M.]]
	[[Category: Joachimiak, A.]]		[[Category: Joachimiak, A.]]
Line 30:		Line 23:
	[[Category: Small beta-barrel]]		[[Category: Small beta-barrel]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 11:47:32 2008''

OCA at 09:47, 16 November 2008

2008-11-16T09:47:35Z

←Older revision		Revision as of 09:47, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	3D3R is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3R OCA].	+	3D3R is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3R OCA].
	[[Category: Bacteria]]		[[Category: Bacteria]]
-	[[Category: Single protein]]
	[[Category: Edwards, A M.]]		[[Category: Edwards, A M.]]
	[[Category: Joachimiak, A.]]		[[Category: Joachimiak, A.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun ~~Sep 28 18~~:06:04 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 11:47:32 2008''

OCA at 15:06, 28 September 2008

2008-09-28T15:06:06Z

←Older revision		Revision as of 15:06, 28 September 2008
Line 1:		Line 1:
-	[[Image:3d3r.~~jpg~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:3d3r.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_3d3r\| PDB=3d3r \| SCENE= }}		{{STRUCTURE_3d3r\| PDB=3d3r \| SCENE= }}

-	~~'''~~Crystal structure of the hydrogenase assembly chaperone HypC/HupF family protein from Shewanella oneidensis MR-1~~'''~~	+	===Crystal structure of the hydrogenase assembly chaperone HypC/HupF family protein from Shewanella oneidensis MR-1===


Line 30:		Line 31:
	[[Category: Small beta-barrel]]		[[Category: Small beta-barrel]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed May~~ 28 09:26:16 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 18:06:04 2008''