3dm0 - Revision history

OCA at 12:49, 30 August 2023

2023-08-30T12:49:01Z

←Older revision		Revision as of 12:49, 30 August 2023
Line 3:		Line 3:
	<StructureSection load='3dm0' size='340' side='right'caption='[[3dm0]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='3dm0' size='340' side='right'caption='[[3dm0]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3dm0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Arath Arath~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DM0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3dm0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana] and [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DM0 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=EDO:1~~,2~~-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.4Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~malE~~, ~~b4034, JW3994~~,~~ARCA, At1g18080, T10F20.9, T10O22.6 ([https~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=3702 ARATH])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900001:alpha-maltose'>PRD_900001</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dm0 OCA], [https://pdbe.org/3dm0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dm0 RCSB], [https://www.ebi.ac.uk/pdbsum/3dm0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dm0 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dm0 OCA], [https://pdbe.org/3dm0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dm0 RCSB], [https://www.ebi.ac.uk/pdbsum/3dm0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dm0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/MALE_ECOLI MALE_ECOLI]] Involved in the high-affinity maltose membrane transport system MalEFGK. Initial receptor for the active transport of and chemotaxis toward maltooligosaccharides.	+	[https://www.uniprot.org/uniprot/MALE_ECOLI MALE_ECOLI] Involved in the high-affinity maltose membrane transport system MalEFGK. Initial receptor for the active transport of and chemotaxis toward maltooligosaccharides.[https://www.uniprot.org/uniprot/GBLPA_ARATH GBLPA_ARATH] Major component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways. Involved in multiple hormone responses and developmental processes (PubMed:16829549, PubMed:18715992, PubMed:18947417). MAPK cascade scaffolding protein involved in the protease IV and ArgC signaling pathway but not the flg22 pathway (PubMed:25731164).<ref>PMID:16829549</ref> <ref>PMID:18715992</ref> <ref>PMID:18947417</ref> <ref>PMID:25731164</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Arath~~]]	+	[[Category: Arabidopsis thaliana]]
		+	[[Category: Escherichia coli K-12]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Armstrong~~, D L~~]]	+	[[Category: Armstrong DL]]
-	[[Category: Moon~~, A F~~]]	+	[[Category: Moon AF]]
-	[[Category: Pedersen~~, L C~~]]	+	[[Category: Pedersen LC]]
-	[[Category: Scappini~~, E L~~]]	+	[[Category: Scappini EL]]
-	[[Category: Ullah, H]]	+	[[Category: Ullah H]]
-	[[Category: Williams~~, L V]]~~	+	[[Category: Williams LV]]
-	~~[[Category: Beta-propeller wd40 repeat]]~~	+
-	~~[[Category: Mbp rack1a]]~~	+
-	~~[[Category: Receptor for activiated protein c-kinase 1]]~~	+
-	~~[[Category: Signaling protein]]~~	+
-	~~[[Category: Sugar binding protein]]~~	+
-	~~[[Category: Sugar transport]]~~	+
-	~~[[Category: Transport]]~~	+
-	~~[[Category: Wd repeat~~]]	+

OCA at 19:24, 20 October 2021

2021-10-20T19:24:52Z

←Older revision		Revision as of 19:24, 20 October 2021
Line 1:		Line 1:

	==Maltose Binding Protein fusion with RACK1 from A. thaliana==		==Maltose Binding Protein fusion with RACK1 from A. thaliana==
-	<StructureSection load='3dm0' size='340' side='right' caption='[[3dm0]], [[Resolution\|resolution]] 2.40Å' scene=''>	+	<StructureSection load='3dm0' size='340' side='right'caption='[[3dm0]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3dm0]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3DM0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3dm0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DM0 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">malE, b4034, JW3994,ARCA, At1g18080, T10F20.9, T10O22.6 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">malE, b4034, JW3994,ARCA, At1g18080, T10F20.9, T10O22.6 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3dm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dm0 OCA], [~~http~~://pdbe.org/3dm0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3dm0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3dm0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3dm0 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dm0 OCA], [https://pdbe.org/3dm0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dm0 RCSB], [https://www.ebi.ac.uk/pdbsum/3dm0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dm0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/MALE_ECOLI MALE_ECOLI]] Involved in the high-affinity maltose membrane transport system MalEFGK. Initial receptor for the active transport of and chemotaxis toward maltooligosaccharides.	+	[[https://www.uniprot.org/uniprot/MALE_ECOLI MALE_ECOLI]] Involved in the high-affinity maltose membrane transport system MalEFGK. Initial receptor for the active transport of and chemotaxis toward maltooligosaccharides.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dm0_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dm0_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Arath]]		[[Category: Arath]]
		+	[[Category: Large Structures]]
	[[Category: Armstrong, D L]]		[[Category: Armstrong, D L]]
	[[Category: Moon, A F]]		[[Category: Moon, A F]]

OCA at 05:07, 16 November 2017

2017-11-16T05:07:53Z

←Older revision		Revision as of 05:07, 16 November 2017
Line 1:		Line 1:
		+
	==Maltose Binding Protein fusion with RACK1 from A. thaliana==		==Maltose Binding Protein fusion with RACK1 from A. thaliana==
	<StructureSection load='3dm0' size='340' side='right' caption='[[3dm0]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='3dm0' size='340' side='right' caption='[[3dm0]], [[Resolution\|resolution]] 2.40Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">malE, b4034, JW3994,ARCA, At1g18080, T10F20.9, T10O22.6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">malE, b4034, JW3994,ARCA, At1g18080, T10F20.9, T10O22.6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dm0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dm0 RCSB], [http://www.ebi.ac.uk/pdbsum/3dm0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dm0 OCA], [http://pdbe.org/3dm0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dm0 RCSB], [http://www.ebi.ac.uk/pdbsum/3dm0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dm0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dm0 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 27:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3dm0" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:29, 26 August 2015

2015-08-26T07:29:07Z

←Older revision		Revision as of 07:29, 26 August 2015
Line 2:		Line 2:
	<StructureSection load='3dm0' size='340' side='right' caption='[[3dm0]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='3dm0' size='340' side='right' caption='[[3dm0]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3dm0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Arabidopsis_thaliana Arabidopsis thaliana~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DM0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3dm0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DM0 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">malE, b4034, JW3994,ARCA, At1g18080, T10F20.9, T10O22.6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ~~Arabidopsis thaliana~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">malE, b4034, JW3994,ARCA, At1g18080, T10F20.9, T10O22.6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dm0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dm0 RCSB], [http://www.ebi.ac.uk/pdbsum/3dm0 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dm0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dm0 RCSB], [http://www.ebi.ac.uk/pdbsum/3dm0 PDBsum]</span></td></tr>
	</table>		</table>
Line 31:		Line 31:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Arabidopsis thaliana~~]]	+	[[Category: Arath]]
	[[Category: Armstrong, D L]]		[[Category: Armstrong, D L]]
	[[Category: Moon, A F]]		[[Category: Moon, A F]]

OCA at 19:24, 25 December 2014

2014-12-25T19:24:24Z

←Older revision		Revision as of 19:24, 25 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dm0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dm0 RCSB], [http://www.ebi.ac.uk/pdbsum/3dm0 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dm0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dm0 RCSB], [http://www.ebi.ac.uk/pdbsum/3dm0 PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/MALE_ECOLI MALE_ECOLI]] Involved in the high-affinity maltose membrane transport system MalEFGK. Initial receptor for the active transport of and chemotaxis toward maltooligosaccharides.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 08:14, 12 November 2014

2014-11-12T08:14:07Z

←Older revision		Revision as of 08:14, 12 November 2014
Line 1:		Line 1:
-	[[~~Image:~~3dm0.~~png~~\|~~left~~\|200px]]	+	==Maltose Binding Protein fusion with RACK1 from A. thaliana==
		+	<StructureSection load='3dm0' size='340' side='right' caption='[[3dm0]], [[Resolution\|resolution]] 2.40Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3dm0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DM0 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">malE, b4034, JW3994,ARCA, At1g18080, T10F20.9, T10O22.6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dm0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dm0 RCSB], [http://www.ebi.ac.uk/pdbsum/3dm0 PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dm0_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The receptor for activated C-kinase 1 (RACK1) is a highly conserved WD40 repeat scaffold protein found in a wide range of eukaryotic species from Chlamydymonas to plants and humans. In tissues of higher mammals, RACK1 is ubiquitously expressed and has been implicated in diverse signaling pathways involving neuropathology, cellular stress, protein translation, and developmental processes. RACK1 has established itself as a scaffold protein through physical interaction with a myriad of signaling proteins ranging from kinases, phosphatases, ion channels, membrane receptors, G proteins, IP3 receptor, and with widely conserved structural proteins associated with the ribosome. In the plant Arabidopsis thaliana, RACK1A is implicated in diverse developmental and environmental stress pathways. Despite the functional conservation of RACK1-mediated protein-protein interaction-regulated signaling modes, the structural basis of such interactions is largely unknown. Here we present the first crystal structure of a RACK1 protein, RACK1 isoform A from Arabidopsis thaliana, at 2.4 A resolution, as a C-terminal fusion of the maltose binding protein. The structure implicates highly conserved surface residues that could play critical roles in protein-protein interactions and reveals the surface location of proposed post-transcriptionally modified residues. The availability of this structure provides a structural basis for dissecting RACK1-mediated cellular signaling mechanisms in both plants and animals.

-	~~{{STRUCTURE_3dm0\| PDB=3dm0 \| SCENE= }}~~	+	Structure of a signal transduction regulator, RACK1, from Arabidopsis thaliana.,Ullah H, Scappini EL, Moon AF, Williams LV, Armstrong DL, Pedersen LC Protein Sci. 2008 Oct;17(10):1771-80. Epub 2008 Aug 20. PMID:18715992<ref>PMID:18715992</ref>

-	~~===Maltose Binding Protein fusion with RACK1 from A. thaliana===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18715992}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[3dm0]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3DM0 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:018715992<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
-	[[Category: Armstrong, D L.]]	+	[[Category: Armstrong, D L]]
-	[[Category: Moon, A F.]]	+	[[Category: Moon, A F]]
-	[[Category: Pedersen, L C.]]	+	[[Category: Pedersen, L C]]
-	[[Category: Scappini, E L.]]	+	[[Category: Scappini, E L]]
-	[[Category: Ullah, H.]]	+	[[Category: Ullah, H]]
-	[[Category: Williams, L V.]]	+	[[Category: Williams, L V]]
	[[Category: Beta-propeller wd40 repeat]]		[[Category: Beta-propeller wd40 repeat]]
	[[Category: Mbp rack1a]]		[[Category: Mbp rack1a]]

OCA: Protected "3dm0" [edit=sysop:move=sysop]

2013-01-07T18:21:46Z

Protected "3dm0" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:21, 7 January 2013

OCA at 18:21, 7 January 2013

2013-01-07T18:21:39Z

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	[[Image:3dm0.png\|left\|200px]]		[[Image:3dm0.png\|left\|200px]]

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	{{STRUCTURE_3dm0\| PDB=3dm0 \| SCENE= }}		{{STRUCTURE_3dm0\| PDB=3dm0 \| SCENE= }}

	===Maltose Binding Protein fusion with RACK1 from A. thaliana===		===Maltose Binding Protein fusion with RACK1 from A. thaliana===

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	==About this Structure==		==About this Structure==
-	~~3DM0~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli,_arabidopsis_thaliana Escherichia coli, arabidopsis~~ thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM0 OCA].	+	[[3dm0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM0 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~18715992~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:018715992</ref><references group="xtra"/>
-	[[Category: ~~Escherichia coli, arabidopsis~~ thaliana]]	+	[[Category: Arabidopsis thaliana]]
	[[Category: Armstrong, D L.]]		[[Category: Armstrong, D L.]]
	[[Category: Moon, A F.]]		[[Category: Moon, A F.]]
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	[[Category: Beta-propeller wd40 repeat]]		[[Category: Beta-propeller wd40 repeat]]
	[[Category: Mbp rack1a]]		[[Category: Mbp rack1a]]
-	[[Category: Periplasm]]
	[[Category: Receptor for activiated protein c-kinase 1]]		[[Category: Receptor for activiated protein c-kinase 1]]
	[[Category: Signaling protein]]		[[Category: Signaling protein]]
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	[[Category: Transport]]		[[Category: Transport]]
	[[Category: Wd repeat]]		[[Category: Wd repeat]]
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OCA at 02:24, 18 February 2009

2009-02-18T02:24:49Z

←Older revision		Revision as of 02:24, 18 February 2009
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	==About this Structure==		==About this Structure==
-	3DM0 is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli,_arabidopsis_thaliana Escherichia coli, arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM0 OCA].	+	3DM0 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli,_arabidopsis_thaliana Escherichia coli, arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM0 OCA].

	==Reference==		==Reference==
-	~~Structure of a signal transduction regulator, RACK1, from Arabidopsis thaliana., Ullah H, Scappini EL, Moon AF, Williams LV, Armstrong DL, Pedersen LC, Protein Sci. 2008 Aug 20.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/18715992 18715992]~~	+	<ref group="xtra">PMID:18715992</ref><references group="xtra"/>
	[[Category: Escherichia coli, arabidopsis thaliana]]		[[Category: Escherichia coli, arabidopsis thaliana]]
-	[[Category: Single protein]]
	[[Category: Armstrong, D L.]]		[[Category: Armstrong, D L.]]
	[[Category: Moon, A F.]]		[[Category: Moon, A F.]]
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	[[Category: Wd repeat]]		[[Category: Wd repeat]]

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OCA at 07:08, 8 October 2008

2008-10-08T07:08:10Z

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