3dzd - Revision history

OCA at 12:55, 30 August 2023

2023-08-30T12:55:39Z

←Older revision		Revision as of 12:55, 30 August 2023
Line 3:		Line 3:
	<StructureSection load='3dzd' size='340' side='right'caption='[[3dzd]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='3dzd' size='340' side='right'caption='[[3dzd]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3dzd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex~~ aeolicus~~" huber and stetter 2001~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DZD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3dzd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DZD FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ADP:ADENOSINE~~-~~5-DIPHOSPHATE'>ADP</scene>~~, ~~<scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.4Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;~~'>~~[[3e7l\|3e7l]]~~</~~div~~><~~/td></tr>~~	+
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">aq_164, ntrC4 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 "Aquifex aeolicus" Huber and Stetter 2001])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dzd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dzd OCA], [https://pdbe.org/3dzd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dzd RCSB], [https://www.ebi.ac.uk/pdbsum/3dzd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dzd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dzd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dzd OCA], [https://pdbe.org/3dzd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dzd RCSB], [https://www.ebi.ac.uk/pdbsum/3dzd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dzd ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/O66551_AQUAE O66551_AQUAE]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Aquifex aeolicus ~~huber and stetter 2001~~]]	+	[[Category: Aquifex aeolicus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Batchelor~~, J D~~]]	+	[[Category: Batchelor JD]]
-	[[Category: Carlo, S De]]	+	[[Category: De Carlo S]]
-	[[Category: Doucleff, M]]	+	[[Category: Doucleff M]]
-	[[Category: Heideker, J]]	+	[[Category: Heideker J]]
-	[[Category: Lamers~~, M M~~]]	+	[[Category: Lamers MM]]
-	[[Category: Lee, C J]]	+	[[Category: Lee C-J]]
-	[[Category: Matsubara, K]]	+	[[Category: Matsubara K]]
-	[[Category: Pelton~~, J G~~]]	+	[[Category: Pelton JG]]
-	[[Category: Wemmer~~, D E]]~~	+	[[Category: Wemmer DE]]
-	~~[[Category: Aaa+ atpase]]~~	+
-	~~[[Category: Atp-binding]]~~	+
-	~~[[Category: Nucleotide-binding]]~~	+
-	~~[[Category: Response regulator]]~~	+
-	~~[[Category: Sigma43 activator]]~~	+
-	~~[[Category: Transcription]]~~	+
-	~~[[Category: Transcription regulation]]~~	+
-	~~[[Category: Transcription regulator]]~~	+
-	~~[[Category: Transcriptional activator~~]]	+

OCA at 08:11, 9 February 2022

2022-02-09T08:11:35Z

←Older revision		Revision as of 08:11, 9 February 2022
Line 1:		Line 1:

	==Crystal structure of sigma54 activator NTRC4 in the inactive state==		==Crystal structure of sigma54 activator NTRC4 in the inactive state==
-	<StructureSection load='3dzd' size='340' side='right' caption='[[3dzd]], [[Resolution\|resolution]] 2.40Å' scene=''>	+	<StructureSection load='3dzd' size='340' side='right'caption='[[3dzd]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3dzd]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3DZD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3dzd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DZD FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3e7l\|3e7l]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3e7l\|3e7l]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aq_164, ntrC4 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 "Aquifex aeolicus" Huber and Stetter 2001])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aq_164, ntrC4 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 "Aquifex aeolicus" Huber and Stetter 2001])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3dzd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dzd OCA], [~~http~~://pdbe.org/3dzd PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3dzd RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3dzd PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3dzd ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dzd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dzd OCA], [https://pdbe.org/3dzd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dzd RCSB], [https://www.ebi.ac.uk/pdbsum/3dzd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dzd ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 24:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Aquifex aeolicus huber and stetter 2001]]		[[Category: Aquifex aeolicus huber and stetter 2001]]
		+	[[Category: Large Structures]]
	[[Category: Batchelor, J D]]		[[Category: Batchelor, J D]]
	[[Category: Carlo, S De]]		[[Category: Carlo, S De]]

OCA at 10:19, 11 August 2016

2016-08-11T10:19:30Z

←Older revision		Revision as of 10:19, 11 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of sigma54 activator NTRC4 in the inactive state==		==Crystal structure of sigma54 activator NTRC4 in the inactive state==
	<StructureSection load='3dzd' size='340' side='right' caption='[[3dzd]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='3dzd' size='340' side='right' caption='[[3dzd]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3dzd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Aquifex_aeolicus Aquifex~~ aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DZD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3dzd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DZD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3e7l\|3e7l]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3e7l\|3e7l]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aq_164, ntrC4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 Aquifex aeolicus])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aq_164, ntrC4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 "Aquifex aeolicus" Huber and Stetter 2001])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dzd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dzd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dzd RCSB], [http://www.ebi.ac.uk/pdbsum/3dzd PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dzd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dzd OCA], [http://pdbe.org/3dzd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dzd RCSB], [http://www.ebi.ac.uk/pdbsum/3dzd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dzd ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 17:		Line 18:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3dzd" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Aquifex aeolicus]]	+	[[Category: Aquifex aeolicus huber and stetter 2001]]
	[[Category: Batchelor, J D]]		[[Category: Batchelor, J D]]
	[[Category: Carlo, S De]]		[[Category: Carlo, S De]]

OCA at 13:14, 19 November 2014

2014-11-19T13:14:56Z

←Older revision		Revision as of 13:14, 19 November 2014
Line 1:		Line 1:
-	[[~~Image:~~3dzd.~~png~~\|~~left~~\|~~200px~~]]	+	==Crystal structure of sigma54 activator NTRC4 in the inactive state==
		+	<StructureSection load='3dzd' size='340' side='right' caption='[[3dzd]], [[Resolution\|resolution]] 2.40Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3dzd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DZD FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3e7l\|3e7l]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aq_164, ntrC4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 Aquifex aeolicus])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dzd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dzd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dzd RCSB], [http://www.ebi.ac.uk/pdbsum/3dzd PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Genetic changes lead gradually to altered protein function, making deduction of the molecular basis for activity from a sequence difficult. Comparative studies provide insights into the functional consequences of specific changes. Here we present structural and biochemical studies of NtrC4, a sigma-54 activator from Aquifex aeolicus, and compare it with NtrC1 (a paralog) and NtrC (a homolog from Salmonella enterica) to provide insight into how a substantial change in regulatory mechanism may have occurred. Activity assays show that assembly of NtrC4's active oligomer is repressed by the N-terminal receiver domain, and that BeF3- addition (mimicking phosphorylation) removes this repression. Observation of assembly without activation for NtrC4 indicates that it is much less strongly repressed than NtrC1. The crystal structure of the unactivated receiver-ATPase domain combination shows a partially disrupted interface. NMR structures of the regulatory domain show that its activation mechanism is very similar to that of NtrC1. The crystal structure of the NtrC4 DNA-binding domain shows that it is dimeric and more similar in structure to NtrC than NtrC1. Electron microscope images of the ATPase-DNA-binding domain combination show formation of oligomeric rings. Sequence alignments provide insights into the distribution of activation mechanisms in this family of proteins.

-	~~{{STRUCTURE_3dzd\| PDB=3dzd \| SCENE= }}~~	+	Structure and regulatory mechanism of Aquifex aeolicus NtrC4: variability and evolution in bacterial transcriptional regulation.,Batchelor JD, Doucleff M, Lee CJ, Matsubara K, De Carlo S, Heideker J, Lamers MH, Pelton JG, Wemmer DE J Mol Biol. 2008 Dec 31;384(5):1058-75. Epub 2008 Oct 17. PMID:18955063<ref>PMID:18955063</ref>

-	~~===Crystal structure~~ of ~~sigma54 activator NTRC4 in~~ the ~~inactive state===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18955063}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[3dzd]] is a 2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Aquifex_aeolicus Aquifex aeolicus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3DZD OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:018955063<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Aquifex aeolicus]]		[[Category: Aquifex aeolicus]]
-	[[Category: Batchelor, J D.]]	+	[[Category: Batchelor, J D]]
-	[[Category: Carlo, S De.]]	+	[[Category: Carlo, S De]]
-	[[Category: Doucleff, M.]]	+	[[Category: Doucleff, M]]
-	[[Category: Heideker, J.]]	+	[[Category: Heideker, J]]
-	[[Category: Lamers, M M.]]	+	[[Category: Lamers, M M]]
-	[[Category: Lee, C J.]]	+	[[Category: Lee, C J]]
-	[[Category: Matsubara, K.]]	+	[[Category: Matsubara, K]]
-	[[Category: Pelton, J G.]]	+	[[Category: Pelton, J G]]
-	[[Category: Wemmer, D E.]]	+	[[Category: Wemmer, D E]]
	[[Category: Aaa+ atpase]]		[[Category: Aaa+ atpase]]
	[[Category: Atp-binding]]		[[Category: Atp-binding]]

OCA: Protected "3dzd" [edit=sysop:move=sysop]

2013-01-09T08:38:38Z

Protected "3dzd" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:38, 9 January 2013

OCA at 08:38, 9 January 2013

2013-01-09T08:38:36Z

←Older revision		Revision as of 08:38, 9 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:3dzd.png\|left\|200px]]		[[Image:3dzd.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_3dzd\| PDB=3dzd \| SCENE= }}		{{STRUCTURE_3dzd\| PDB=3dzd \| SCENE= }}

	===Crystal structure of sigma54 activator NTRC4 in the inactive state===		===Crystal structure of sigma54 activator NTRC4 in the inactive state===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_18955063}}, adds the Publication Abstract to the page
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	{{ABSTRACT_PUBMED_18955063}}		{{ABSTRACT_PUBMED_18955063}}

	==About this Structure==		==About this Structure==
-	~~3DZD~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZD OCA].	+	[[3dzd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZD OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~18955063~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:018955063</ref><references group="xtra"/>
	[[Category: Aquifex aeolicus]]		[[Category: Aquifex aeolicus]]
	[[Category: Batchelor, J D.]]		[[Category: Batchelor, J D.]]
Line 43:		Line 31:
	[[Category: Transcription regulator]]		[[Category: Transcription regulator]]
	[[Category: Transcriptional activator]]		[[Category: Transcriptional activator]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 10 18:45:55 2009''

OCA at 15:45, 10 June 2009

2009-06-10T15:45:57Z

←Older revision		Revision as of 15:45, 10 June 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	3DZD is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZD OCA].	+	3DZD is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZD OCA].

	==Reference==		==Reference==
-	Structure and Regulatory Mechanism of Aquifex aeolicus NtrC4: Variability and Evolution in Bacterial Transcriptional Regulation., Batchelor JD, Doucleff M, Lee CJ, Matsubara K, De Carlo S, Heideker J, Lamers MH, Pelton JG, Wemmer DE, J Mol Biol. 2008 Oct 17. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/18955063 18955063]~~	+	<ref group="xtra">PMID:18955063</ref><references group="xtra"/>
	[[Category: Aquifex aeolicus]]		[[Category: Aquifex aeolicus]]
-	[[Category: ~~Single protein~~]]	+	[[Category: Batchelor, J D.]]
-	[[Category: ~~Pdbx_ordinal=~~, ~~<PDBx~~:~~audit_author~~.]]	+	[[Category: Carlo, S De.]]
		+	[[Category: Doucleff, M.]]
		+	[[Category: Heideker, J.]]
		+	[[Category: Lamers, M M.]]
		+	[[Category: Lee, C J.]]
		+	[[Category: Matsubara, K.]]
		+	[[Category: Pelton, J G.]]
		+	[[Category: Wemmer, D E.]]
	[[Category: Aaa+ atpase]]		[[Category: Aaa+ atpase]]
	[[Category: Atp-binding]]		[[Category: Atp-binding]]
Line 37:		Line 44:
	[[Category: Transcriptional activator]]		[[Category: Transcriptional activator]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Dec 24 20~~:17:~~00 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 10 18:45:55 2009''

OCA at 12:02, 25 December 2008

2008-12-25T12:02:21Z

←Older revision		Revision as of 12:02, 25 December 2008
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	3DZD is a ~~2 chains~~ structure of ~~sequences~~ from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZD OCA].	+	3DZD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZD OCA].

	==Reference==		==Reference==
	Structure and Regulatory Mechanism of Aquifex aeolicus NtrC4: Variability and Evolution in Bacterial Transcriptional Regulation., Batchelor JD, Doucleff M, Lee CJ, Matsubara K, De Carlo S, Heideker J, Lamers MH, Pelton JG, Wemmer DE, J Mol Biol. 2008 Oct 17. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18955063 18955063]		Structure and Regulatory Mechanism of Aquifex aeolicus NtrC4: Variability and Evolution in Bacterial Transcriptional Regulation., Batchelor JD, Doucleff M, Lee CJ, Matsubara K, De Carlo S, Heideker J, Lamers MH, Pelton JG, Wemmer DE, J Mol Biol. 2008 Oct 17. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18955063 18955063]
	[[Category: Aquifex aeolicus]]		[[Category: Aquifex aeolicus]]
-	[[Category: ~~Batchelor, J D.~~]]	+	[[Category: Single protein]]
-	[[Category: ~~Carlo~~, ~~S De.]]~~	+	[[Category: Pdbx_ordinal=, <PDBx:audit_author.]]
-	~~[[Category~~: ~~Doucleff, M.]]~~	+
-	~~[[Category: Heideker, J.]]~~	+
-	~~[[Category: Lamers, M M.]]~~	+
-	~~[[Category: Lee, C J.]]~~	+
-	~~[[Category: Matsubara, K.]]~~	+
-	~~[[Category: Pelton, J G.]]~~	+
-	~~[[Category: Wemmer, D E~~.]]	+
	[[Category: Aaa+ atpase]]		[[Category: Aaa+ atpase]]
	[[Category: Atp-binding]]		[[Category: Atp-binding]]
Line 44:		Line 37:
	[[Category: Transcriptional activator]]		[[Category: Transcriptional activator]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Fri~~ Dec ~~5 09~~:52:12 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 24 20:17:00 2008''

OCA at 07:52, 5 December 2008

2008-12-05T07:52:13Z

←Older revision		Revision as of 07:52, 5 December 2008
Line 1:		Line 1:
	{{Seed}}		{{Seed}}
-	[[Image:3dzd.~~jpg~~\|left\|200px]]	+	[[Image:3dzd.png\|left\|200px]]

	<!--		<!--
Line 44:		Line 44:
	[[Category: Transcriptional activator]]		[[Category: Transcriptional activator]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu Nov 27 13~~:37:41 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Dec 5 09:52:12 2008''

OCA at 11:37, 27 November 2008

2008-11-27T11:37:41Z

←Older revision		Revision as of 11:37, 27 November 2008
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3dzd.jpg\|left\|200px]]

-	The ~~entry 3dzd~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3dzd", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3dzd\| PDB=3dzd \| SCENE= }}

-	~~Authors: Batchelor, J.D., Doucleff, M., Lee, C.-J., Matsubara, K., De Carlo, S., Heideker, J., Lamers, M.M., Pelton, J.G., Wemmer, D.E.~~	+	===Crystal structure of sigma54 activator NTRC4 in the inactive state===

-	Description: Crystal structure of sigma54 activator NTRC4 in the inactive state

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Nov ~~20 07~~:38:23 2008''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_18955063}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 18955063 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_18955063}}
		+
		+	==About this Structure==
		+	3DZD is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZD OCA].
		+
		+	==Reference==
		+	Structure and Regulatory Mechanism of Aquifex aeolicus NtrC4: Variability and Evolution in Bacterial Transcriptional Regulation., Batchelor JD, Doucleff M, Lee CJ, Matsubara K, De Carlo S, Heideker J, Lamers MH, Pelton JG, Wemmer DE, J Mol Biol. 2008 Oct 17. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18955063 18955063]
		+	[[Category: Aquifex aeolicus]]
		+	[[Category: Batchelor, J D.]]
		+	[[Category: Carlo, S De.]]
		+	[[Category: Doucleff, M.]]
		+	[[Category: Heideker, J.]]
		+	[[Category: Lamers, M M.]]
		+	[[Category: Lee, C J.]]
		+	[[Category: Matsubara, K.]]
		+	[[Category: Pelton, J G.]]
		+	[[Category: Wemmer, D E.]]
		+	[[Category: Aaa+ atpase]]
		+	[[Category: Atp-binding]]
		+	[[Category: Nucleotide-binding]]
		+	[[Category: Response regulator]]
		+	[[Category: Sigma43 activator]]
		+	[[Category: Transcription]]
		+	[[Category: Transcription regulation]]
		+	[[Category: Transcription regulator]]
		+	[[Category: Transcriptional activator]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Nov 27 13:37:41 2008''