3e39 - Revision history

OCA at 11:33, 1 February 2023

2023-02-01T11:33:37Z

←Older revision		Revision as of 11:33, 1 February 2023
Line 3:		Line 3:
	<StructureSection load='3e39' size='340' side='right'caption='[[3e39]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='3e39' size='340' side='right'caption='[[3e39]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3e39]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Desag Desag~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E39 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E39 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3e39]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Oleidesulfovibrio_alaskensis_G20 Oleidesulfovibrio alaskensis G20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E39 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E39 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=~~PGE~~:~~TRIETHYLENE+GLYCOL~~'>~~PGE~~</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene>~~</td></tr>~~	+
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_387283.1, Dde_0787 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=207559 DESAG])</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e39 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e39 OCA], [https://pdbe.org/3e39 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e39 RCSB], [https://www.ebi.ac.uk/pdbsum/3e39 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e39 ProSAT], [https://www.topsan.org/Proteins/JCSG/3e39 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e39 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e39 OCA], [https://pdbe.org/3e39 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e39 RCSB], [https://www.ebi.ac.uk/pdbsum/3e39 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e39 ProSAT], [https://www.topsan.org/Proteins/JCSG/3e39 TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q314Q8_OLEA2 Q314Q8_OLEA2]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Desag]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Structural genomic]]~~	+	[[Category: Oleidesulfovibrio alaskensis G20]]
-	~~[[Category: Jcsg]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: PSI, Protein structure initiative~~]]	+

OCA at 11:39, 16 February 2022

2022-02-16T11:39:34Z

←Older revision		Revision as of 11:39, 16 February 2022
Line 3:		Line 3:
	<StructureSection load='3e39' size='340' side='right'caption='[[3e39]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='3e39' size='340' side='right'caption='[[3e39]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3e39]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Desag Desag]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E39 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3E39 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3e39]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Desag Desag]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E39 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E39 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_387283.1, Dde_0787 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=207559 DESAG])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_387283.1, Dde_0787 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=207559 DESAG])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3e39 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e39 OCA], [~~http~~://pdbe.org/3e39 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3e39 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3e39 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3e39 ProSAT], [~~http~~://www.topsan.org/Proteins/JCSG/3e39 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e39 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e39 OCA], [https://pdbe.org/3e39 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e39 RCSB], [https://www.ebi.ac.uk/pdbsum/3e39 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e39 ProSAT], [https://www.topsan.org/Proteins/JCSG/3e39 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 08:00, 24 July 2019

2019-07-24T08:00:08Z

←Older revision		Revision as of 08:00, 24 July 2019
Line 1:		Line 1:

	==Crystal structure of a putative nitroreductase in complex with fmn (dde_0787) from desulfovibrio desulfuricans subsp. at 1.70 A resolution==		==Crystal structure of a putative nitroreductase in complex with fmn (dde_0787) from desulfovibrio desulfuricans subsp. at 1.70 A resolution==
-	<StructureSection load='3e39' size='340' side='right' caption='[[3e39]], [[Resolution\|resolution]] 1.70Å' scene=''>	+	<StructureSection load='3e39' size='340' side='right'caption='[[3e39]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3e39]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Desdg Desdg~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E39 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3E39 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3e39]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desag Desag]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E39 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3E39 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_387283.1, Dde_0787 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=207559 ~~DESDG~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_387283.1, Dde_0787 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=207559 DESAG])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e39 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e39 OCA], [http://pdbe.org/3e39 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3e39 RCSB], [http://www.ebi.ac.uk/pdbsum/3e39 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3e39 ProSAT], [http://www.topsan.org/Proteins/JCSG/3e39 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e39 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e39 OCA], [http://pdbe.org/3e39 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3e39 RCSB], [http://www.ebi.ac.uk/pdbsum/3e39 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3e39 ProSAT], [http://www.topsan.org/Proteins/JCSG/3e39 TOPSAN]</span></td></tr>
	</table>		</table>
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e3/3e39_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e3/3e39_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Desdg~~]]	+	[[Category: Desag]]
		+	[[Category: Large Structures]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: PSI, Protein structure initiative]]		[[Category: PSI, Protein structure initiative]]

OCA at 09:01, 25 October 2017

2017-10-25T09:01:31Z

←Older revision		Revision as of 09:01, 25 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of a putative nitroreductase in complex with fmn (dde_0787) from desulfovibrio desulfuricans subsp. at 1.70 A resolution==		==Crystal structure of a putative nitroreductase in complex with fmn (dde_0787) from desulfovibrio desulfuricans subsp. at 1.70 A resolution==
	<StructureSection load='3e39' size='340' side='right' caption='[[3e39]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='3e39' size='340' side='right' caption='[[3e39]], [[Resolution\|resolution]] 1.70Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_387283.1, Dde_0787 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=207559 DESDG])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_387283.1, Dde_0787 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=207559 DESDG])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e39 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e39 OCA], [http://pdbe.org/3e39 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3e39 RCSB], [http://www.ebi.ac.uk/pdbsum/3e39 PDBsum], [http://www.topsan.org/Proteins/JCSG/3e39 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e39 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e39 OCA], [http://pdbe.org/3e39 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3e39 RCSB], [http://www.ebi.ac.uk/pdbsum/3e39 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3e39 ProSAT], [http://www.topsan.org/Proteins/JCSG/3e39 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 05:33, 9 February 2016

2016-02-09T05:33:21Z

←Older revision		Revision as of 05:33, 9 February 2016
Line 2:		Line 2:
	<StructureSection load='3e39' size='340' side='right' caption='[[3e39]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='3e39' size='340' side='right' caption='[[3e39]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3e39]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Desulfovibrio_alaskensis_g20 Desulfovibrio alaskensis g20~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E39 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3E39 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3e39]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desdg Desdg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E39 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3E39 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_387283.1, Dde_0787 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=207559 ~~Desulfovibrio alaskensis G20~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_387283.1, Dde_0787 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=207559 DESDG])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e39 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e39 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3e39 RCSB], [http://www.ebi.ac.uk/pdbsum/3e39 PDBsum], [http://www.topsan.org/Proteins/JCSG/3e39 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e39 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e39 OCA], [http://pdbe.org/3e39 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3e39 RCSB], [http://www.ebi.ac.uk/pdbsum/3e39 PDBsum], [http://www.topsan.org/Proteins/JCSG/3e39 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e39 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Desulfovibrio alaskensis g20~~]]	+	[[Category: Desdg]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: PSI, Protein structure initiative]]		[[Category: PSI, Protein structure initiative]]

OCA at 06:28, 22 January 2015

2015-01-22T06:28:50Z

←Older revision		Revision as of 06:28, 22 January 2015
Line 1:		Line 1:
-	~~[[Image:3e39.png\|left\|200px]]~~	+	==Crystal structure of a putative nitroreductase in complex with fmn (dde_0787) from desulfovibrio desulfuricans subsp. at 1.70 A resolution==
-		+	<StructureSection load='3e39' size='340' side='right' caption='[[3e39]], [[Resolution\|resolution]] 1.70Å' scene=''>
-	~~{{STRUCTURE_3e39\| PDB=3e39 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3e39]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_alaskensis_g20 Desulfovibrio alaskensis g20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E39 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3E39 FirstGlance]. <br>
-	===Crystal structure of a putative nitroreductase in complex with fmn (dde_0787) from desulfovibrio desulfuricans subsp. at 1.70 A resolution===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_387283.1, Dde_0787 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=207559 Desulfovibrio alaskensis G20])</td></tr>
-	==~~About this Structure~~==	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e39 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e39 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3e39 RCSB], [http://www.ebi.ac.uk/pdbsum/3e39 PDBsum], [http://www.topsan.org/Proteins/JCSG/3e39 TOPSAN]</span></td></tr>
-	[[3e39]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_alaskensis_g20 Desulfovibrio alaskensis g20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E39 OCA].	+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e3/3e39_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Desulfovibrio alaskensis g20]]		[[Category: Desulfovibrio alaskensis g20]]
-	[[Category: ~~JCSG, Joint Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
-	[[Category: Joint center for structural genomic]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi-2]]~~	+
-	~~[[Category: Structural genomic~~]]	+

OCA at 13:21, 6 February 2013

2013-02-06T13:21:20Z

←Older revision		Revision as of 13:21, 6 February 2013
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	[[Image:3e39.png\|left\|200px]]		[[Image:3e39.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3e39", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_3e39\| PDB=3e39 \| SCENE= }}		{{STRUCTURE_3e39\| PDB=3e39 \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	[[3e39]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Desulfovibrio_desulfuricans_subsp._desulfuricans_str._g20~~ Desulfovibrio ~~desulfuricans subsp. desulfuricans str.~~ g20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E39 OCA].	+	[[3e39]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_alaskensis_g20 Desulfovibrio alaskensis g20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E39 OCA].
-	[[Category: Desulfovibrio ~~desulfuricans subsp. desulfuricans str.~~ g20]]	+	[[Category: Desulfovibrio alaskensis g20]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
		+	[[Category: Jcsg]]
		+	[[Category: Joint center for structural genomic]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-2]]
		+	[[Category: Structural genomic]]

OCA: Protected "3e39" [edit=sysop:move=sysop]

2011-03-23T05:44:24Z

Protected "3e39" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:44, 23 March 2011

OCA at 05:44, 23 March 2011

2011-03-23T05:44:22Z

←Older revision		Revision as of 05:44, 23 March 2011
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-	{{Seed}}
	[[Image:3e39.png\|left\|200px]]		[[Image:3e39.png\|left\|200px]]

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	{{STRUCTURE_3e39\| PDB=3e39 \| SCENE= }}		{{STRUCTURE_3e39\| PDB=3e39 \| SCENE= }}

-	===Crystal structure of ~~Putative Nitroreductase~~ in ~~Complex~~ with ~~FMN~~ (~~YP_387283.1~~) from ~~DESULFOVIBRIO DESULFURICANS G20~~ at 1.70 A resolution===	+	===Crystal structure of a putative nitroreductase in complex with fmn (dde_0787) from desulfovibrio desulfuricans subsp. at 1.70 A resolution===


	==About this Structure==		==About this Structure==
-	~~3E39~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans_subsp._desulfuricans_str._g20 Desulfovibrio desulfuricans subsp. desulfuricans str. g20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E39 OCA].	+	[[3e39]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans_subsp._desulfuricans_str._g20 Desulfovibrio desulfuricans subsp. desulfuricans str. g20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E39 OCA].
	[[Category: Desulfovibrio desulfuricans subsp. desulfuricans str. g20]]		[[Category: Desulfovibrio desulfuricans subsp. desulfuricans str. g20]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
-	[[Category: Flavoprotein]]
-	[[Category: Jcsg]]
-	[[Category: Joint center for structural genomic]]
-	[[Category: Nitroreductase family]]
-	[[Category: Protein structure initiative]]
-	[[Category: Psi-2]]
-	[[Category: Putative nitroreductase in complex with fmn]]
-	[[Category: Structural genomic]]
-	[[Category: Unknown function]]
-	[[Category: Yp_387283 1]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 14:50:58 2008''

OCA at 12:50, 16 November 2008

2008-11-16T12:50:59Z

←Older revision		Revision as of 12:50, 16 November 2008
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	==About this Structure==		==About this Structure==
-	3E39 is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans_subsp._desulfuricans_str._g20 Desulfovibrio desulfuricans subsp. desulfuricans str. g20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E39 OCA].	+	3E39 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans_subsp._desulfuricans_str._g20 Desulfovibrio desulfuricans subsp. desulfuricans str. g20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E39 OCA].
	[[Category: Desulfovibrio desulfuricans subsp. desulfuricans str. g20]]		[[Category: Desulfovibrio desulfuricans subsp. desulfuricans str. g20]]
-	[[Category: Single protein]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
	[[Category: Flavoprotein]]		[[Category: Flavoprotein]]
Line 29:		Line 28:
	[[Category: Yp_387283 1]]		[[Category: Yp_387283 1]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun ~~Sep 28 22~~:11:46 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 14:50:58 2008''