3e58 - Revision history

OCA at 19:35, 20 October 2021

2021-10-20T19:35:38Z

←Older revision		Revision as of 19:35, 20 October 2021
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	==Crystal structure of putative beta-phosphoglucomutase from Streptococcus thermophilus==		==Crystal structure of putative beta-phosphoglucomutase from Streptococcus thermophilus==
-	<StructureSection load='3e58' size='340' side='right' caption='[[3e58]], [[Resolution\|resolution]] 1.86Å' scene=''>	+	<StructureSection load='3e58' size='340' side='right'caption='[[3e58]], [[Resolution\|resolution]] 1.86Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3e58]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Strt2 Strt2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E58 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3E58 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3e58]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Strt2 Strt2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E58 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E58 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">stu0379 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264199 STRT2])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">stu0379 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264199 STRT2])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3e58 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e58 OCA], [~~http~~://pdbe.org/3e58 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3e58 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3e58 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3e58 ProSAT], [~~http~~://www.topsan.org/Proteins/MCSG/3e58 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e58 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e58 OCA], [https://pdbe.org/3e58 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e58 RCSB], [https://www.ebi.ac.uk/pdbsum/3e58 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e58 ProSAT], [https://www.topsan.org/Proteins/MCSG/3e58 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Strt2]]		[[Category: Strt2]]
	[[Category: Chang, C]]		[[Category: Chang, C]]

OCA at 21:38, 2 December 2018

2018-12-02T21:38:13Z

←Older revision		Revision as of 21:38, 2 December 2018
Line 1:		Line 1:
		+
	==Crystal structure of putative beta-phosphoglucomutase from Streptococcus thermophilus==		==Crystal structure of putative beta-phosphoglucomutase from Streptococcus thermophilus==
	<StructureSection load='3e58' size='340' side='right' caption='[[3e58]], [[Resolution\|resolution]] 1.86Å' scene=''>		<StructureSection load='3e58' size='340' side='right' caption='[[3e58]], [[Resolution\|resolution]] 1.86Å' scene=''>
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	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">stu0379 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264199 STRT2])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">stu0379 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264199 STRT2])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e58 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e58 OCA], [http://pdbe.org/3e58 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3e58 RCSB], [http://www.ebi.ac.uk/pdbsum/3e58 PDBsum], [http://www.topsan.org/Proteins/MCSG/3e58 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e58 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e58 OCA], [http://pdbe.org/3e58 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3e58 RCSB], [http://www.ebi.ac.uk/pdbsum/3e58 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3e58 ProSAT], [http://www.topsan.org/Proteins/MCSG/3e58 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e5/3e58_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e5/3e58_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 04:33, 7 February 2016

2016-02-07T04:33:07Z

←Older revision		Revision as of 04:33, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='3e58' size='340' side='right' caption='[[3e58]], [[Resolution\|resolution]] 1.86Å' scene=''>		<StructureSection load='3e58' size='340' side='right' caption='[[3e58]], [[Resolution\|resolution]] 1.86Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3e58]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Streptococcus_thermophilus_lmg_18311 Streptococcus thermophilus lmg 18311~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E58 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3E58 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3e58]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Strt2 Strt2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E58 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3E58 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">stu0379 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264199 ~~Streptococcus thermophilus LMG 18311~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">stu0379 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264199 STRT2])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e58 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e58 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3e58 RCSB], [http://www.ebi.ac.uk/pdbsum/3e58 PDBsum], [http://www.topsan.org/Proteins/MCSG/3e58 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e58 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e58 OCA], [http://pdbe.org/3e58 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3e58 RCSB], [http://www.ebi.ac.uk/pdbsum/3e58 PDBsum], [http://www.topsan.org/Proteins/MCSG/3e58 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e58 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Streptococcus thermophilus lmg 18311~~]]	+	[[Category: Strt2]]
	[[Category: Chang, C]]		[[Category: Chang, C]]
	[[Category: Cobb, G]]		[[Category: Cobb, G]]

OCA at 13:30, 19 November 2014

2014-11-19T13:30:55Z

←Older revision		Revision as of 13:30, 19 November 2014
Line 1:		Line 1:
-	~~[[Image:3e58.png\|left\|200px]]~~	+	==Crystal structure of putative beta-phosphoglucomutase from Streptococcus thermophilus==
-		+	<StructureSection load='3e58' size='340' side='right' caption='[[3e58]], [[Resolution\|resolution]] 1.86Å' scene=''>
-	~~{{STRUCTURE_3e58\| PDB=3e58 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3e58]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_thermophilus_lmg_18311 Streptococcus thermophilus lmg 18311]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E58 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3E58 FirstGlance]. <br>
-	===Crystal structure of putative beta-phosphoglucomutase from Streptococcus thermophilus===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">stu0379 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264199 Streptococcus thermophilus LMG 18311])</td></tr>
-	==~~About this Structure~~==	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e58 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e58 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3e58 RCSB], [http://www.ebi.ac.uk/pdbsum/3e58 PDBsum], [http://www.topsan.org/Proteins/MCSG/3e58 TOPSAN]</span></td></tr>
-	[[3e58]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_thermophilus_lmg_18311 Streptococcus thermophilus lmg 18311]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E58 OCA].	+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e5/3e58_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Streptococcus thermophilus lmg 18311]]		[[Category: Streptococcus thermophilus lmg 18311]]
-	[[Category: Chang, C.]]	+	[[Category: Chang, C]]
-	[[Category: Cobb, G.]]	+	[[Category: Cobb, G]]
-	[[Category: Joachimiak, A.]]	+	[[Category: Joachimiak, A]]
-	[[Category: ~~MCSG, Midwest Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Souvong, K.]]	+	[[Category: Souvong, K]]
-	[[Category: Tesar, C.]]	+	[[Category: Tesar, C]]
	[[Category: Beta-phosphoglucomutase]]		[[Category: Beta-phosphoglucomutase]]
	[[Category: Isomerase]]		[[Category: Isomerase]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
-	[[Category: ~~Midwest center for structural genomic]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi-2~~]]	+
	[[Category: Streptococcus thermophilus]]		[[Category: Streptococcus thermophilus]]
-	[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA: Protected "3e58" [edit=sysop:move=sysop]

2013-01-09T08:58:45Z

Protected "3e58" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:58, 9 January 2013

OCA at 08:58, 9 January 2013

2013-01-09T08:58:39Z

←Older revision		Revision as of 08:58, 9 January 2013
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-	{{Seed}}
	[[Image:3e58.png\|left\|200px]]		[[Image:3e58.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3e58", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3e58\| PDB=3e58 \| SCENE= }}		{{STRUCTURE_3e58\| PDB=3e58 \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~3E58~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Streptococcus_thermophilus_lmg_18311 Streptococcus thermophilus lmg 18311]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E58 OCA].	+	[[3e58]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_thermophilus_lmg_18311 Streptococcus thermophilus lmg 18311]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E58 OCA].
	[[Category: Streptococcus thermophilus lmg 18311]]		[[Category: Streptococcus thermophilus lmg 18311]]
	[[Category: Chang, C.]]		[[Category: Chang, C.]]
Line 31:		Line 24:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 11:00:34 2008''

OCA at 09:00, 16 November 2008

2008-11-16T09:00:35Z

←Older revision		Revision as of 09:00, 16 November 2008
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	{{Seed}}		{{Seed}}
-	[[Image:3e58.~~jpg~~\|left\|200px]]	+	[[Image:3e58.png\|left\|200px]]

	<!--		<!--
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	==About this Structure==		==About this Structure==
-	3E58 is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Streptococcus_thermophilus_lmg_18311 Streptococcus thermophilus lmg 18311]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E58 OCA].	+	3E58 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Streptococcus_thermophilus_lmg_18311 Streptococcus thermophilus lmg 18311]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E58 OCA].
-	~~[[Category: Single protein]]~~	+
	[[Category: Streptococcus thermophilus lmg 18311]]		[[Category: Streptococcus thermophilus lmg 18311]]
	[[Category: Chang, C.]]		[[Category: Chang, C.]]
Line 33:		Line 32:
	[[Category: Unknown function]]		[[Category: Unknown function]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Aug 27~~ 11:38:16 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 11:00:34 2008''

OCA: New page: {{Seed}} 200px