3ef5 - Revision history

OCA at 09:47, 21 February 2024

2024-02-21T09:47:22Z

←Older revision		Revision as of 09:47, 21 February 2024
Line 3:		Line 3:
	<StructureSection load='3ef5' size='340' side='right'caption='[[3ef5]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='3ef5' size='340' side='right'caption='[[3ef5]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ef5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_15356 Atcc 15356~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EF5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ef5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bdellovibrio_bacteriovorus Bdellovibrio bacteriovorus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EF5 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=DGT:~~2~~-DEOXYGUANOSINE-5-TRIPHOSPHATE'>DGT</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.6Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[3eeu\|3eeu]], [[3ees\|3ees]]~~</~~div~~>~~</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DGT:2-DEOXYGUANOSINE-5-TRIPHOSPHATE'>DGT</scene></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mutT, Bd0714 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=959 ATCC 15356])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ef5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ef5 OCA], [https://pdbe.org/3ef5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ef5 RCSB], [https://www.ebi.ac.uk/pdbsum/3ef5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ef5 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ef5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ef5 OCA], [https://pdbe.org/3ef5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ef5 RCSB], [https://www.ebi.ac.uk/pdbsum/3ef5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ef5 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q6MPX4_BDEBA Q6MPX4_BDEBA]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 19:		Line 20:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ef5 ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ef5 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Until recently, the mechanism of mRNA decay in bacteria was thought to be different from that of eukaryotes. This paradigm changed with the discovery that RppH (ORF176/NudH/YgdP), an Escherichia coli enzyme that belongs to the Nudix superfamily, is an RNA pyrophosphohydrolase that initiates mRNA decay by cleaving pyrophosphate from the 5'-triphosphate. Here we report the 1.9 Angstroms resolution structure of the Nudix hydrolase BdRppH from Bdellovibrio bacteriovorus, a bacterium that feeds on other Gram-negative bacteria. Based on the structure of the enzyme alone and in complex with GTP-Mg2+, we propose a mode of RNA binding similar to that of the nuclear decapping enzyme from Xenopus laevis, X29. In additional experiments, we show that BdRppH can indeed function in vitro and in vivo as an RNA pyrophosphohydrolase. These findings set the basis for the identification of possible decapping enzymes in other bacteria.
-
-	Structure and biological function of the RNA pyrophosphohydrolase BdRppH from Bdellovibrio bacteriovorus.,Messing SA, Gabelli SB, Liu Q, Celesnik H, Belasco JG, Pineiro SA, Amzel LM Structure. 2009 Mar 11;17(3):472-81. PMID:19278661<ref>PMID:19278661</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 3ef5" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 15356~~]]	+	[[Category: Bdellovibrio bacteriovorus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Amzel~~, L M~~]]	+	[[Category: Amzel LM]]
-	[[Category: Gabelli~~, S B~~]]	+	[[Category: Gabelli SB]]
-	[[Category: Messing~~, S A]]~~	+	[[Category: Messing SA]]
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Nudix]]~~	+
-	~~[[Category: Rna pyrophosphohydrolase~~]]	+

OCA at 11:48, 16 February 2022

2022-02-16T11:48:16Z

←Older revision		Revision as of 11:48, 16 February 2022
Line 1:		Line 1:

	==Structure of the RNA pyrophosphohydrolase BdRppH in complex with dGTP==		==Structure of the RNA pyrophosphohydrolase BdRppH in complex with dGTP==
-	<StructureSection load='3ef5' size='340' side='right' caption='[[3ef5]], [[Resolution\|resolution]] 2.60Å' scene=''>	+	<StructureSection load='3ef5' size='340' side='right'caption='[[3ef5]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ef5]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_15356 Atcc 15356]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EF5 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3EF5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ef5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_15356 Atcc 15356]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EF5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DGT:2-DEOXYGUANOSINE-5-TRIPHOSPHATE'>DGT</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DGT:2-DEOXYGUANOSINE-5-TRIPHOSPHATE'>DGT</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3eeu\|3eeu]], [[3ees\|3ees]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3eeu\|3eeu]], [[3ees\|3ees]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mutT, Bd0714 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=959 ATCC 15356])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mutT, Bd0714 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=959 ATCC 15356])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ef5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ef5 OCA], [~~http~~://pdbe.org/3ef5 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3ef5 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3ef5 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3ef5 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ef5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ef5 OCA], [https://pdbe.org/3ef5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ef5 RCSB], [https://www.ebi.ac.uk/pdbsum/3ef5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ef5 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ef/3ef5_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ef/3ef5_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 15356]]		[[Category: Atcc 15356]]
		+	[[Category: Large Structures]]
	[[Category: Amzel, L M]]		[[Category: Amzel, L M]]
	[[Category: Gabelli, S B]]		[[Category: Gabelli, S B]]

OCA at 21:07, 11 August 2016

2016-08-11T21:07:52Z

←Older revision		Revision as of 21:07, 11 August 2016
Line 1:		Line 1:
		+
	==Structure of the RNA pyrophosphohydrolase BdRppH in complex with dGTP==		==Structure of the RNA pyrophosphohydrolase BdRppH in complex with dGTP==
	<StructureSection load='3ef5' size='340' side='right' caption='[[3ef5]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='3ef5' size='340' side='right' caption='[[3ef5]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ef5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bdellovibrio_bacteriovorus Bdellovibrio bacteriovorus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EF5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ef5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_15356 Atcc 15356]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EF5 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DGT:2-DEOXYGUANOSINE-5-TRIPHOSPHATE'>DGT</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DGT:2-DEOXYGUANOSINE-5-TRIPHOSPHATE'>DGT</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3eeu\|3eeu]], [[3ees\|3ees]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3eeu\|3eeu]], [[3ees\|3ees]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mutT, Bd0714 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=959 ~~Bdellovibrio bacteriovorus~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mutT, Bd0714 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=959 ATCC 15356])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ef5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ef5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ef5 RCSB], [http://www.ebi.ac.uk/pdbsum/3ef5 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ef5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ef5 OCA], [http://pdbe.org/3ef5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ef5 RCSB], [http://www.ebi.ac.uk/pdbsum/3ef5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ef5 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ef5 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 26:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3ef5" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bdellovibrio bacteriovorus~~]]	+	[[Category: Atcc 15356]]
	[[Category: Amzel, L M]]		[[Category: Amzel, L M]]
	[[Category: Gabelli, S B]]		[[Category: Gabelli, S B]]

OCA at 13:21, 19 November 2014

2014-11-19T13:21:46Z

←Older revision		Revision as of 13:21, 19 November 2014
Line 1:		Line 1:
-	[[~~Image:~~3ef5.~~png~~\|~~left~~\|200px]]	+	==Structure of the RNA pyrophosphohydrolase BdRppH in complex with dGTP==
		+	<StructureSection load='3ef5' size='340' side='right' caption='[[3ef5]], [[Resolution\|resolution]] 2.60Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3ef5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bdellovibrio_bacteriovorus Bdellovibrio bacteriovorus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EF5 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DGT:2-DEOXYGUANOSINE-5-TRIPHOSPHATE'>DGT</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3eeu\|3eeu]], [[3ees\|3ees]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mutT, Bd0714 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=959 Bdellovibrio bacteriovorus])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ef5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ef5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ef5 RCSB], [http://www.ebi.ac.uk/pdbsum/3ef5 PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ef/3ef5_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Until recently, the mechanism of mRNA decay in bacteria was thought to be different from that of eukaryotes. This paradigm changed with the discovery that RppH (ORF176/NudH/YgdP), an Escherichia coli enzyme that belongs to the Nudix superfamily, is an RNA pyrophosphohydrolase that initiates mRNA decay by cleaving pyrophosphate from the 5'-triphosphate. Here we report the 1.9 Angstroms resolution structure of the Nudix hydrolase BdRppH from Bdellovibrio bacteriovorus, a bacterium that feeds on other Gram-negative bacteria. Based on the structure of the enzyme alone and in complex with GTP-Mg2+, we propose a mode of RNA binding similar to that of the nuclear decapping enzyme from Xenopus laevis, X29. In additional experiments, we show that BdRppH can indeed function in vitro and in vivo as an RNA pyrophosphohydrolase. These findings set the basis for the identification of possible decapping enzymes in other bacteria.

-	~~{{STRUCTURE_3ef5\| PDB=3ef5 \| SCENE= }}~~	+	Structure and biological function of the RNA pyrophosphohydrolase BdRppH from Bdellovibrio bacteriovorus.,Messing SA, Gabelli SB, Liu Q, Celesnik H, Belasco JG, Pineiro SA, Amzel LM Structure. 2009 Mar 11;17(3):472-81. PMID:19278661<ref>PMID:19278661</ref>

-	~~===Structure~~ of the ~~RNA pyrophosphohydrolase BdRppH in complex with dGTP===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19278661}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[3ef5]] is a 2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Bdellovibrio_bacteriovorus Bdellovibrio bacteriovorus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3EF5 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:019278661<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Bdellovibrio bacteriovorus]]		[[Category: Bdellovibrio bacteriovorus]]
-	[[Category: Amzel, L M.]]	+	[[Category: Amzel, L M]]
-	[[Category: Gabelli, S B.]]	+	[[Category: Gabelli, S B]]
-	[[Category: Messing, S A.]]	+	[[Category: Messing, S A]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Nudix]]		[[Category: Nudix]]
	[[Category: Rna pyrophosphohydrolase]]		[[Category: Rna pyrophosphohydrolase]]

OCA: Protected "3ef5" [edit=sysop:move=sysop]

2013-01-09T08:47:21Z

Protected "3ef5" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:47, 9 January 2013

OCA at 08:47, 9 January 2013

2013-01-09T08:47:17Z

←Older revision		Revision as of 08:47, 9 January 2013
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3ef5.png\|left\|200px]]
-	[[Image:3ef5.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3ef5", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3ef5\| PDB=3ef5 \| SCENE= }}		{{STRUCTURE_3ef5\| PDB=3ef5 \| SCENE= }}

	===Structure of the RNA pyrophosphohydrolase BdRppH in complex with dGTP===		===Structure of the RNA pyrophosphohydrolase BdRppH in complex with dGTP===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19278661}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19278661 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19278661}}		{{ABSTRACT_PUBMED_19278661}}

	==About this Structure==		==About this Structure==
-	~~3EF5~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Bdellovibrio_bacteriovorus Bdellovibrio bacteriovorus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EF5 OCA].	+	[[3ef5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bdellovibrio_bacteriovorus Bdellovibrio bacteriovorus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EF5 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19278661~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019278661</ref><references group="xtra"/>
	[[Category: Bdellovibrio bacteriovorus]]		[[Category: Bdellovibrio bacteriovorus]]
	[[Category: Amzel, L M.]]		[[Category: Amzel, L M.]]
Line 31:		Line 19:
	[[Category: Nudix]]		[[Category: Nudix]]
	[[Category: Rna pyrophosphohydrolase]]		[[Category: Rna pyrophosphohydrolase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 25 12:26:26 2009''

OCA at 10:26, 25 March 2009

2009-03-25T10:26:33Z

←Older revision		Revision as of 10:26, 25 March 2009
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3ef5.jpg\|left\|200px]]

-	The ~~entry 3ef5~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3ef5", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3ef5\| PDB=3ef5 \| SCENE= }}

-	~~Authors: Messing, S.A., Gabelli, S.B., Amzel, L.M.~~	+	===Structure of the RNA pyrophosphohydrolase BdRppH in complex with dGTP===

-	Description: Structure of the RNA pyrophosphohydrolase BdRppH in complex with dGTP

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Sep 24 10~~:15:~~00 2008~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_19278661}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 19278661 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_19278661}}
		+
		+	==About this Structure==
		+	3EF5 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bdellovibrio_bacteriovorus Bdellovibrio bacteriovorus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EF5 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:19278661</ref><references group="xtra"/>
		+	[[Category: Bdellovibrio bacteriovorus]]
		+	[[Category: Amzel, L M.]]
		+	[[Category: Gabelli, S B.]]
		+	[[Category: Messing, S A.]]
		+	[[Category: Hydrolase]]
		+	[[Category: Nudix]]
		+	[[Category: Rna pyrophosphohydrolase]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 25 12:26:26 2009''

OCA at 07:15, 24 September 2008

2008-09-24T07:15:01Z

←Older revision		Revision as of 07:15, 24 September 2008
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3ef5 is ON HOLD	+	The entry 3ef5 is ON HOLD until Paper Publication

	Authors: Messing, S.A., Gabelli, S.B., Amzel, L.M.		Authors: Messing, S.A., Gabelli, S.B., Amzel, L.M.
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	Description: Structure of the RNA pyrophosphohydrolase BdRppH in complex with dGTP		Description: Structure of the RNA pyrophosphohydrolase BdRppH in complex with dGTP

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep ~~17 13~~:41:38 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 24 10:15:00 2008''

OCA: New page: '''Unreleased structure''' The entry 3ef5 is ON HOLD Authors: Messing, S.A., Gabelli, S.B., Amzel, L.M. Description: Structure of the RNA pyrophosphohydrolase BdRppH in complex with dG...

2008-09-17T10:41:39Z

New page: '''Unreleased structure''' The entry 3ef5 is ON HOLD Authors: Messing, S.A., Gabelli, S.B., Amzel, L.M. Description: Structure of the RNA pyrophosphohydrolase BdRppH in complex with dG...

New page

'''Unreleased structure'''

The entry 3ef5 is ON HOLD

Authors: Messing, S.A., Gabelli, S.B., Amzel, L.M.

Description: Structure of the RNA pyrophosphohydrolase BdRppH in complex with dGTP

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 17 13:41:38 2008''