3f4a - Revision history

OCA at 00:28, 28 December 2023

2023-12-28T00:28:28Z

←Older revision		Revision as of 00:28, 28 December 2023
Line 3:		Line 3:
	<StructureSection load='3f4a' size='340' side='right'caption='[[3f4a]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3f4a' size='340' side='right'caption='[[3f4a]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3f4a]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_18824 Atcc 18824~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F4A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3F4A FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3f4a]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F4A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3F4A FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>~~, ~~<scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">G7731~~, ~~YGR203W ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])~~<~~/td></tr>~~	+
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[https://en.wikipedia.org/wiki/Phosphoprotein_phosphatase Phosphoprotein phosphatase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.16 3.1.3.16]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3f4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f4a OCA], [https://pdbe.org/3f4a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3f4a RCSB], [https://www.ebi.ac.uk/pdbsum/3f4a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3f4a ProSAT], [https://www.topsan.org/Proteins/MCSG/3f4a TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3f4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f4a OCA], [https://pdbe.org/3f4a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3f4a RCSB], [https://www.ebi.ac.uk/pdbsum/3f4a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3f4a ProSAT], [https://www.topsan.org/Proteins/MCSG/3f4a TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/YCH1_YEAST YCH1_YEAST]] Protein phosphatase.<ref>PMID:19382206</ref>	+	[https://www.uniprot.org/uniprot/YCH1_YEAST YCH1_YEAST] Protein phosphatase.<ref>PMID:19382206</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 26:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 18824]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Phosphoprotein phosphatase~~]]	+	[[Category: Saccharomyces cerevisiae]]
-	[[Category: Cui, H]]	+	[[Category: Cui H]]
-	[[Category: Edwards~~, A M~~]]	+	[[Category: Edwards AM]]
-	[[Category: Joachimiak, A]]	+	[[Category: Joachimiak A]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Osipiuk J]]
-	[[Category: Osipiuk, J]]	+	[[Category: Savchenko A]]
-	[[Category: Savchenko, A]]	+	[[Category: Singer AU]]
-	[[Category: Singer~~, A U~~]]	+	[[Category: Xu X]]
-	[[Category: Xu, X]]	+	[[Category: Yakunin AF]]
-	[[Category: Yakunin~~, A F]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Mcsg]]~~	+
-	~~[[Category: Protein phosphatase]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Rhodanese-like family~~]]	+

OCA at 09:23, 23 February 2022

2022-02-23T09:23:23Z

←Older revision		Revision as of 09:23, 23 February 2022
Line 1:		Line 1:

	==Structure of Ygr203w, a yeast protein tyrosine phosphatase of the Rhodanese family==		==Structure of Ygr203w, a yeast protein tyrosine phosphatase of the Rhodanese family==
-	<StructureSection load='3f4a' size='340' side='right' caption='[[3f4a]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='3f4a' size='340' side='right'caption='[[3f4a]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3f4a]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F4A OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3F4A FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3f4a]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F4A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3F4A FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">G7731, YGR203W ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">G7731, YGR203W ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Phosphoprotein_phosphatase Phosphoprotein phosphatase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.16 3.1.3.16] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Phosphoprotein_phosphatase Phosphoprotein phosphatase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.16 3.1.3.16] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3f4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f4a OCA], [~~http~~://pdbe.org/3f4a PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3f4a RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3f4a PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3f4a ProSAT], [~~http~~://www.topsan.org/Proteins/MCSG/3f4a TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3f4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f4a OCA], [https://pdbe.org/3f4a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3f4a RCSB], [https://www.ebi.ac.uk/pdbsum/3f4a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3f4a ProSAT], [https://www.topsan.org/Proteins/MCSG/3f4a TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/YCH1_YEAST YCH1_YEAST]] Protein phosphatase.<ref>PMID:19382206</ref>	+	[[https://www.uniprot.org/uniprot/YCH1_YEAST YCH1_YEAST]] Protein phosphatase.<ref>PMID:19382206</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f4/3f4a_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f4/3f4a_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 27:		Line 27:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 18824]]		[[Category: Atcc 18824]]
		+	[[Category: Large Structures]]
	[[Category: Phosphoprotein phosphatase]]		[[Category: Phosphoprotein phosphatase]]
	[[Category: Cui, H]]		[[Category: Cui, H]]

OCA at 14:42, 5 August 2016

2016-08-05T14:42:37Z

←Older revision		Revision as of 14:42, 5 August 2016
Line 1:		Line 1:
		+
	==Structure of Ygr203w, a yeast protein tyrosine phosphatase of the Rhodanese family==		==Structure of Ygr203w, a yeast protein tyrosine phosphatase of the Rhodanese family==
	<StructureSection load='3f4a' size='340' side='right' caption='[[3f4a]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3f4a' size='340' side='right' caption='[[3f4a]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3f4a]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Saccharomyces_cerevisiae Saccharomyces cerevisiae~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F4A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3F4A FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3f4a]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F4A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3F4A FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">G7731, YGR203W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ~~Saccharomyces cerevisiae~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">G7731, YGR203W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoprotein_phosphatase Phosphoprotein phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.16 3.1.3.16] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoprotein_phosphatase Phosphoprotein phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.16 3.1.3.16] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3f4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f4a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3f4a RCSB], [http://www.ebi.ac.uk/pdbsum/3f4a PDBsum], [http://www.topsan.org/Proteins/MCSG/3f4a TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3f4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f4a OCA], [http://pdbe.org/3f4a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3f4a RCSB], [http://www.ebi.ac.uk/pdbsum/3f4a PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3f4a ProSAT], [http://www.topsan.org/Proteins/MCSG/3f4a TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~YG4E_YEAST YG4E_YEAST~~]] Protein phosphatase.<ref>PMID:19382206</ref>	+	[[http://www.uniprot.org/uniprot/YCH1_YEAST YCH1_YEAST]] Protein phosphatase.<ref>PMID:19382206</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 19:		Line 20:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3f4a ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	== References ==		== References ==
Line 25:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 18824]]
	[[Category: Phosphoprotein phosphatase]]		[[Category: Phosphoprotein phosphatase]]
-	[[Category: Saccharomyces cerevisiae]]
	[[Category: Cui, H]]		[[Category: Cui, H]]
	[[Category: Edwards, A M]]		[[Category: Edwards, A M]]

OCA at 19:39, 25 December 2014

2014-12-25T19:39:44Z

←Older revision		Revision as of 19:39, 25 December 2014
Line 9:		Line 9:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3f4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f4a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3f4a RCSB], [http://www.ebi.ac.uk/pdbsum/3f4a PDBsum], [http://www.topsan.org/Proteins/MCSG/3f4a TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3f4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f4a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3f4a RCSB], [http://www.ebi.ac.uk/pdbsum/3f4a PDBsum], [http://www.topsan.org/Proteins/MCSG/3f4a TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/YG4E_YEAST YG4E_YEAST]] Protein phosphatase.<ref>PMID:19382206</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 19:		Line 21:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 08:51, 26 November 2014

2014-11-26T08:51:01Z

←Older revision		Revision as of 08:51, 26 November 2014
Line 1:		Line 1:
-	~~[[Image:3f4a.png\|left\|200px]]~~	+	==Structure of Ygr203w, a yeast protein tyrosine phosphatase of the Rhodanese family==
-		+	<StructureSection load='3f4a' size='340' side='right' caption='[[3f4a]], [[Resolution\|resolution]] 1.80Å' scene=''>
-	~~{{STRUCTURE_3f4a\| PDB=3f4a \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3f4a]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F4A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3F4A FirstGlance]. <br>
-	===Structure of Ygr203w, a yeast protein tyrosine phosphatase of the Rhodanese family===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">G7731, YGR203W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])</td></tr>
-	==~~About this Structure~~==	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoprotein_phosphatase Phosphoprotein phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.16 3.1.3.16] </span></td></tr>
-	[[3f4a]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F4A OCA].	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3f4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f4a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3f4a RCSB], [http://www.ebi.ac.uk/pdbsum/3f4a PDBsum], [http://www.topsan.org/Proteins/MCSG/3f4a TOPSAN]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f4/3f4a_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Phosphoprotein phosphatase]]		[[Category: Phosphoprotein phosphatase]]
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
-	[[Category: Cui, H.]]	+	[[Category: Cui, H]]
-	[[Category: Edwards, A M.]]	+	[[Category: Edwards, A M]]
-	[[Category: Joachimiak, A.]]	+	[[Category: Joachimiak, A]]
-	[[Category: ~~MCSG, Midwest Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Osipiuk, J.]]	+	[[Category: Osipiuk, J]]
-	[[Category: Savchenko, A.]]	+	[[Category: Savchenko, A]]
-	[[Category: Singer, A U.]]	+	[[Category: Singer, A U]]
-	[[Category: Xu, X.]]	+	[[Category: Xu, X]]
-	[[Category: Yakunin, A F.]]	+	[[Category: Yakunin, A F]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
-	[[Category: Midwest center for structural genomic]]
	[[Category: Protein phosphatase]]		[[Category: Protein phosphatase]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi-2~~]]	+
	[[Category: Rhodanese-like family]]		[[Category: Rhodanese-like family]]
-	[[Category: Structural genomic]]

OCA: Protected "3f4a" [edit=sysop:move=sysop]

2013-02-13T11:14:03Z

Protected "3f4a" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:14, 13 February 2013

OCA at 11:14, 13 February 2013

2013-02-13T11:14:00Z

←Older revision		Revision as of 11:14, 13 February 2013
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-	~~{{Seed}}~~	+	[[Image:3f4a.png\|left\|200px]]
-	[[Image:3f4a.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3f4a", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3f4a\| PDB=3f4a \| SCENE= }}		{{STRUCTURE_3f4a\| PDB=3f4a \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~3F4A~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F4A OCA].	+	[[3f4a]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F4A OCA].
	[[Category: Phosphoprotein phosphatase]]		[[Category: Phosphoprotein phosphatase]]
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
Line 34:		Line 27:
	[[Category: Rhodanese-like family]]		[[Category: Rhodanese-like family]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Nov 27 13:43:21 2008''

OCA at 11:43, 27 November 2008

2008-11-27T11:43:22Z

←Older revision		Revision as of 11:43, 27 November 2008
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3f4a.jpg\|left\|200px]]

-	The ~~entry 3f4a~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3f4a", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3f4a\| PDB=3f4a \| SCENE= }}

-	~~Authors: Singer~~, ~~A.U. , Xu, X., Cui, H., Osipiuk, J., Joachimiak, A.,, Edwards, A.M., Yakunin, A.F., Savchenko, A., Midwest Center for Structural Genomics (MCSG)~~	+	===Structure of Ygr203w, a yeast protein tyrosine phosphatase of the Rhodanese family===

-	Description: Structure of Ygr203w, a yeast protein tyrosine phosphatase of the Rhodanese family

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Nov ~~20 07~~:41:27 2008''	+	==About this Structure==
		+	3F4A is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F4A OCA].
		+	[[Category: Phosphoprotein phosphatase]]
		+	[[Category: Saccharomyces cerevisiae]]
		+	[[Category: Cui, H.]]
		+	[[Category: Edwards, A M.]]
		+	[[Category: Joachimiak, A.]]
		+	[[Category: MCSG, Midwest Center for Structural Genomics.]]
		+	[[Category: Osipiuk, J.]]
		+	[[Category: Savchenko, A.]]
		+	[[Category: Singer, A U.]]
		+	[[Category: Xu, X.]]
		+	[[Category: Yakunin, A F.]]
		+	[[Category: Hydrolase]]
		+	[[Category: Mcsg]]
		+	[[Category: Midwest center for structural genomic]]
		+	[[Category: Protein phosphatase]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-2]]
		+	[[Category: Rhodanese-like family]]
		+	[[Category: Structural genomic]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Nov 27 13:43:21 2008''

OCA: New page: '''Unreleased structure''' The entry 3f4a is ON HOLD Authors: Singer, A.U. , Xu, X., Cui, H., Osipiuk, J., Joachimiak, A.,, Edwards, A.M., Yakunin, A.F., Savchenko, A., Midwest Center f...

2008-11-20T05:41:28Z

New page: '''Unreleased structure''' The entry 3f4a is ON HOLD Authors: Singer, A.U. , Xu, X., Cui, H., Osipiuk, J., Joachimiak, A.,, Edwards, A.M., Yakunin, A.F., Savchenko, A., Midwest Center f...

New page

'''Unreleased structure'''

The entry 3f4a is ON HOLD

Authors: Singer, A.U. , Xu, X., Cui, H., Osipiuk, J., Joachimiak, A.,, Edwards, A.M., Yakunin, A.F., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

Description: Structure of Ygr203w, a yeast protein tyrosine phosphatase of the Rhodanese family

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Nov 20 07:41:27 2008''