3fpy - Revision history

OCA at 06:50, 6 September 2023

2023-09-06T06:50:04Z

←Older revision		Revision as of 06:50, 6 September 2023
Line 3:		Line 3:
	<StructureSection load='3fpy' size='340' side='right'caption='[[3fpy]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3fpy' size='340' side='right'caption='[[3fpy]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3fpy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FPY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FPY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3fpy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FPY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FPY FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>~~, ~~<scene name='pdbligand=TRS:~~2~~-AMINO-2-HYDROXYMETHYL-PROPANE-~~1~~,3-DIOL'>TRS</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1ag0\|1ag0]], [[3fq1\|3fq1]], [[3fq2\|3fq2]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">azu, PA4922 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fpy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fpy OCA], [https://pdbe.org/3fpy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fpy RCSB], [https://www.ebi.ac.uk/pdbsum/3fpy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fpy ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fpy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fpy OCA], [https://pdbe.org/3fpy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fpy RCSB], [https://www.ebi.ac.uk/pdbsum/3fpy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fpy ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/AZUR_PSEAE AZUR_PSEAE]] Transfers electrons from cytochrome c551 to cytochrome oxidase.	+	[https://www.uniprot.org/uniprot/AZUR_PSEAE AZUR_PSEAE] Transfers electrons from cytochrome c551 to cytochrome oxidase.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 38:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Gray, H B~~]]	+	[[Category: Pseudomonas aeruginosa]]
-	[[Category: ~~Lancaster, K M~~]]	+	[[Category: Gray HB]]
-	[[Category: ~~Copper]]~~	+	[[Category: Lancaster KM]]
-	~~[[Category: Copper binding]]~~	+
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Periplasm]]~~	+
-	~~[[Category: Transport~~]]	+

OCA at 19:57, 20 October 2021

2021-10-20T19:57:27Z

←Older revision		Revision as of 19:57, 20 October 2021
Line 1:		Line 1:

	==Azurin C112D/M121L==		==Azurin C112D/M121L==
-	<StructureSection load='3fpy' size='340' side='right' caption='[[3fpy]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='3fpy' size='340' side='right'caption='[[3fpy]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3fpy]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FPY OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3FPY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3fpy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FPY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FPY FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ag0\|1ag0]], [[3fq1\|3fq1]], [[3fq2\|3fq2]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ag0\|1ag0]], [[3fq1\|3fq1]], [[3fq2\|3fq2]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">azu, PA4922 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">azu, PA4922 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3fpy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fpy OCA], [~~http~~://pdbe.org/3fpy PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3fpy RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3fpy PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3fpy ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fpy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fpy OCA], [https://pdbe.org/3fpy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fpy RCSB], [https://www.ebi.ac.uk/pdbsum/3fpy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fpy ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/AZUR_PSEAE AZUR_PSEAE]] Transfers electrons from cytochrome c551 to cytochrome oxidase.	+	[[https://www.uniprot.org/uniprot/AZUR_PSEAE AZUR_PSEAE]] Transfers electrons from cytochrome c551 to cytochrome oxidase.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:

	==See Also==		==See Also==
-	*[[Azurin\|Azurin]]	+	*[[Azurin 3D structures\|Azurin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Gray, H B]]		[[Category: Gray, H B]]
	[[Category: Lancaster, K M]]		[[Category: Lancaster, K M]]

OCA at 07:14, 5 December 2018

2018-12-05T07:14:49Z

←Older revision		Revision as of 07:14, 5 December 2018
Line 1:		Line 1:
		+
	==Azurin C112D/M121L==		==Azurin C112D/M121L==
	<StructureSection load='3fpy' size='340' side='right' caption='[[3fpy]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3fpy' size='340' side='right' caption='[[3fpy]], [[Resolution\|resolution]] 2.10Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ag0\|1ag0]], [[3fq1\|3fq1]], [[3fq2\|3fq2]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ag0\|1ag0]], [[3fq1\|3fq1]], [[3fq2\|3fq2]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">azu, PA4922 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">azu, PA4922 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fpy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fpy OCA], [http://pdbe.org/3fpy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3fpy RCSB], [http://www.ebi.ac.uk/pdbsum/3fpy PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fpy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fpy OCA], [http://pdbe.org/3fpy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3fpy RCSB], [http://www.ebi.ac.uk/pdbsum/3fpy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3fpy ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fp/3fpy_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fp/3fpy_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 38:		Line 39:
	[[Category: Gray, H B]]		[[Category: Gray, H B]]
	[[Category: Lancaster, K M]]		[[Category: Lancaster, K M]]
		+	[[Category: Copper]]
	[[Category: Copper binding]]		[[Category: Copper binding]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Metal-binding]]		[[Category: Metal-binding]]
		+	[[Category: Periplasm]]
	[[Category: Transport]]		[[Category: Transport]]

OCA at 00:24, 9 February 2016

2016-02-09T00:24:14Z

←Older revision		Revision as of 00:24, 9 February 2016
Line 2:		Line 2:
	<StructureSection load='3fpy' size='340' side='right' caption='[[3fpy]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3fpy' size='340' side='right' caption='[[3fpy]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3fpy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pseudomonas_aeruginosa Pseudomonas aeruginosa~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FPY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FPY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3fpy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FPY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FPY FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ag0\|1ag0]], [[3fq1\|3fq1]], [[3fq2\|3fq2]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ag0\|1ag0]], [[3fq1\|3fq1]], [[3fq2\|3fq2]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">azu, PA4922 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 ~~Pseudomonas aeruginosa~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">azu, PA4922 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fpy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fpy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3fpy RCSB], [http://www.ebi.ac.uk/pdbsum/3fpy PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fpy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fpy OCA], [http://pdbe.org/3fpy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3fpy RCSB], [http://www.ebi.ac.uk/pdbsum/3fpy PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fpy ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 28:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3fpy" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Pseudomonas aeruginosa]]
	[[Category: Gray, H B]]		[[Category: Gray, H B]]
	[[Category: Lancaster, K M]]		[[Category: Lancaster, K M]]

OCA at 03:11, 25 December 2014

2014-12-25T03:11:19Z

←Older revision		Revision as of 03:11, 25 December 2014
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fpy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fpy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3fpy RCSB], [http://www.ebi.ac.uk/pdbsum/3fpy PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fpy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fpy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3fpy RCSB], [http://www.ebi.ac.uk/pdbsum/3fpy PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/AZUR_PSEAE AZUR_PSEAE]] Transfers electrons from cytochrome c551 to cytochrome oxidase.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 10:03, 3 December 2014

2014-12-03T10:03:38Z

←Older revision		Revision as of 10:03, 3 December 2014
Line 1:		Line 1:
-	[[~~Image:~~3fpy.~~png~~\|~~left~~\|200px]]	+	==Azurin C112D/M121L==
		+	<StructureSection load='3fpy' size='340' side='right' caption='[[3fpy]], [[Resolution\|resolution]] 2.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3fpy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FPY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FPY FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ag0\|1ag0]], [[3fq1\|3fq1]], [[3fq2\|3fq2]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">azu, PA4922 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 Pseudomonas aeruginosa])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fpy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fpy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3fpy RCSB], [http://www.ebi.ac.uk/pdbsum/3fpy PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fp/3fpy_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Copper proteins play key roles in biological processes such as electron transfer and dioxygen activation; the active site of each of these proteins is classified as either type 1, 2, or 3, depending on its optical and electron paramagnetic resonance properties. We have built a new type of site that we call "type zero copper" by incorporating leucine, isoleucine, or phenylalanine in place of methionine at position 121 in C112D Pseudomonas aeruginosa azurin. X-ray crystallographic analysis shows that these sites adopt distorted tetrahedral geometries, with an unusually short Cu-O(G45 carbonyl) bond (2.35-2.55 A). Relatively weak absorption near 800 nm and narrow parallel hyperfine splittings in EPR spectra are the spectroscopic signatures of type zero copper. Copper K-edge x-ray absorption spectra suggest elevated Cu(II) 4p character in the d-electron ground state. Cyclic voltammetric experiments demonstrate that the electron transfer reactivities of type zero azurins are enhanced relative to that of the corresponding type 2 (C112D) protein.

-	~~{{STRUCTURE_3fpy\| PDB=3fpy \| SCENE= }}~~	+	Type Zero Copper Proteins.,Lancaster KM, Debeer George S, Yokoyama K, Richards JH, Gray HB Nat Chem. 2009 Dec 1;1(9):711-715. PMID:20305734<ref>PMID:20305734</ref>

-	~~===Azurin C112D~~/~~M121L===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

-	~~{{ABSTRACT_PUBMED_20305734}}~~	+	==See Also==
-		+	*[[Azurin\|Azurin]]
-	==~~About this Structure~~==	+	== References ==
-	[[~~3fpy~~]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FPY OCA].	+	<references/>
-		+	__TOC__
-	==~~Reference~~==	+	</StructureSection>
-	<~~ref group="xtra">PMID:020305734<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
-	[[Category: Gray, H B.]]	+	[[Category: Gray, H B]]
-	[[Category: Lancaster, K M.]]	+	[[Category: Lancaster, K M]]
	[[Category: Copper binding]]		[[Category: Copper binding]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Metal-binding]]		[[Category: Metal-binding]]
	[[Category: Transport]]		[[Category: Transport]]

OCA: Protected "3fpy" [edit=sysop:move=sysop]

2013-02-20T14:10:10Z

Protected "3fpy" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:10, 20 February 2013

OCA at 14:10, 20 February 2013

2013-02-20T14:10:08Z

←Older revision		Revision as of 14:10, 20 February 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:3fpy.png\|left\|200px]]		[[Image:3fpy.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3fpy", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3fpy\| PDB=3fpy \| SCENE= }}		{{STRUCTURE_3fpy\| PDB=3fpy \| SCENE= }}

	===Azurin C112D/M121L===		===Azurin C112D/M121L===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_20305734}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 20305734 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_20305734}}		{{ABSTRACT_PUBMED_20305734}}

	==About this Structure==		==About this Structure==
-	~~3FPY~~ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FPY OCA].	+	[[3fpy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FPY OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20305734~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020305734</ref><references group="xtra"/>
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
	[[Category: Gray, H B.]]		[[Category: Gray, H B.]]
	[[Category: Lancaster, K M.]]		[[Category: Lancaster, K M.]]
-	[[Category: Copper]]
	[[Category: Copper binding]]		[[Category: Copper binding]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Metal-binding]]		[[Category: Metal-binding]]
-	[[Category: Periplasm]]
	[[Category: Transport]]		[[Category: Transport]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 14 08:58:01 2010''

OCA at 05:58, 14 April 2010

2010-04-14T05:58:01Z

←Older revision		Revision as of 05:58, 14 April 2010
Line 1:		Line 1:
	{{Seed}}		{{Seed}}
-	[[Image:3fpy.~~jpg~~\|left\|200px]]	+	[[Image:3fpy.png\|left\|200px]]

	<!--		<!--
Line 12:		Line 12:
	===Azurin C112D/M121L===		===Azurin C112D/M121L===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_20305734}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 20305734 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_20305734}}

	==About this Structure==		==About this Structure==
-	3FPY is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FPY OCA].	+	3FPY is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FPY OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:20305734</ref><references group="xtra"/>
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
	[[Category: Gray, H B.]]		[[Category: Gray, H B.]]
Line 25:		Line 34:
	[[Category: Transport]]		[[Category: Transport]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Nov 11 22~~:21:~~44 2009~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 14 08:58:01 2010''

OCA at 20:21, 11 November 2009

2009-11-11T20:21:47Z

←Older revision		Revision as of 20:21, 11 November 2009
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3fpy.jpg\|left\|200px]]

-	The ~~entry 3fpy~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3fpy", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3fpy\| PDB=3fpy \| SCENE= }}

-	~~Authors: Lancaster, K.M., Gray, H.B.~~	+	===Azurin C112D/M121L===

-	Description: Azurin C112D/M121L

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Feb 4~~ 11:23:02 2009''	+	==About this Structure==
		+	3FPY is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FPY OCA].
		+	[[Category: Pseudomonas aeruginosa]]
		+	[[Category: Gray, H B.]]
		+	[[Category: Lancaster, K M.]]
		+	[[Category: Copper]]
		+	[[Category: Copper binding]]
		+	[[Category: Electron transport]]
		+	[[Category: Metal-binding]]
		+	[[Category: Periplasm]]
		+	[[Category: Transport]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 11 22:21:44 2009''