3ge5 - Revision history

OCA at 11:38, 1 February 2023

2023-02-01T11:38:48Z

←Older revision		Revision as of 11:38, 1 February 2023
Line 3:		Line 3:
	<StructureSection load='3ge5' size='340' side='right'caption='[[3ge5]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='3ge5' size='340' side='right'caption='[[3ge5]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ge5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Porgi Porgi~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GE5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GE5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ge5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis_W83 Porphyromonas gingivalis W83]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GE5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GE5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=~~SO4~~:~~SULFATE+ION~~'>~~SO4~~</scene>, <scene name='pdbligand=~~UNL~~:~~UNKNOWN~~+~~LIGAND~~'>~~UNL~~</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene>~~</td></tr>~~	+
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_904626.1, PG_0310 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 PORGI])</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ge5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ge5 OCA], [https://pdbe.org/3ge5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ge5 RCSB], [https://www.ebi.ac.uk/pdbsum/3ge5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ge5 ProSAT], [https://www.topsan.org/Proteins/JCSG/3ge5 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ge5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ge5 OCA], [https://pdbe.org/3ge5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ge5 RCSB], [https://www.ebi.ac.uk/pdbsum/3ge5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ge5 ProSAT], [https://www.topsan.org/Proteins/JCSG/3ge5 TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q7MX99_PORGI Q7MX99_PORGI]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Porgi]]~~	+	[[Category: Porphyromonas gingivalis W83]]
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Jcsg]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: PSI, Protein structure initiative~~]]	+

OCA at 08:02, 9 March 2022

2022-03-09T08:02:36Z

←Older revision		Revision as of 08:02, 9 March 2022
Line 3:		Line 3:
	<StructureSection load='3ge5' size='340' side='right'caption='[[3ge5]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='3ge5' size='340' side='right'caption='[[3ge5]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ge5]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Porgi Porgi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GE5 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3GE5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ge5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Porgi Porgi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GE5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GE5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_904626.1, PG_0310 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 PORGI])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_904626.1, PG_0310 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 PORGI])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ge5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ge5 OCA], [~~http~~://pdbe.org/3ge5 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3ge5 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3ge5 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3ge5 ProSAT], [~~http~~://www.topsan.org/Proteins/JCSG/3ge5 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ge5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ge5 OCA], [https://pdbe.org/3ge5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ge5 RCSB], [https://www.ebi.ac.uk/pdbsum/3ge5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ge5 ProSAT], [https://www.topsan.org/Proteins/JCSG/3ge5 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 08:12, 24 July 2019

2019-07-24T08:12:57Z

←Older revision		Revision as of 08:12, 24 July 2019
Line 1:		Line 1:

	==Crystal structure of a putative nad(p)h:fmn oxidoreductase (pg0310) from porphyromonas gingivalis w83 at 1.70 A resolution==		==Crystal structure of a putative nad(p)h:fmn oxidoreductase (pg0310) from porphyromonas gingivalis w83 at 1.70 A resolution==
-	<StructureSection load='3ge5' size='340' side='right' caption='[[3ge5]], [[Resolution\|resolution]] 1.70Å' scene=''>	+	<StructureSection load='3ge5' size='340' side='right'caption='[[3ge5]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3ge5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Porgi Porgi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GE5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GE5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3ge5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Porgi Porgi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GE5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GE5 FirstGlance]. <br>
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ge/3ge5_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ge/3ge5_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Porgi]]		[[Category: Porgi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 09:29, 25 October 2017

2017-10-25T09:29:49Z

←Older revision		Revision as of 09:29, 25 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of a putative nad(p)h:fmn oxidoreductase (pg0310) from porphyromonas gingivalis w83 at 1.70 A resolution==		==Crystal structure of a putative nad(p)h:fmn oxidoreductase (pg0310) from porphyromonas gingivalis w83 at 1.70 A resolution==
	<StructureSection load='3ge5' size='340' side='right' caption='[[3ge5]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='3ge5' size='340' side='right' caption='[[3ge5]], [[Resolution\|resolution]] 1.70Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_904626.1, PG_0310 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 PORGI])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_904626.1, PG_0310 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 PORGI])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ge5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ge5 OCA], [http://pdbe.org/3ge5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ge5 RCSB], [http://www.ebi.ac.uk/pdbsum/3ge5 PDBsum], [http://www.topsan.org/Proteins/JCSG/3ge5 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ge5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ge5 OCA], [http://pdbe.org/3ge5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ge5 RCSB], [http://www.ebi.ac.uk/pdbsum/3ge5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ge5 ProSAT], [http://www.topsan.org/Proteins/JCSG/3ge5 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 10:20, 7 February 2016

2016-02-07T10:20:10Z

←Older revision		Revision as of 10:20, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='3ge5' size='340' side='right' caption='[[3ge5]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='3ge5' size='340' side='right' caption='[[3ge5]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ge5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Porphyromonas_gingivalis_w83 Porphyromonas gingivalis w83~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GE5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GE5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ge5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Porgi Porgi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GE5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GE5 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_904626.1, PG_0310 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 ~~Porphyromonas gingivalis W83~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_904626.1, PG_0310 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 PORGI])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ge5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ge5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ge5 RCSB], [http://www.ebi.ac.uk/pdbsum/3ge5 PDBsum], [http://www.topsan.org/Proteins/JCSG/3ge5 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ge5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ge5 OCA], [http://pdbe.org/3ge5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ge5 RCSB], [http://www.ebi.ac.uk/pdbsum/3ge5 PDBsum], [http://www.topsan.org/Proteins/JCSG/3ge5 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ge5 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Porphyromonas gingivalis w83~~]]	+	[[Category: Porgi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: PSI, Protein structure initiative]]		[[Category: PSI, Protein structure initiative]]

OCA at 08:50, 8 December 2014

2014-12-08T08:50:36Z

←Older revision		Revision as of 08:50, 8 December 2014
Line 1:		Line 1:
-	~~[[Image:3ge5.png\|left\|200px]]~~	+	==Crystal structure of a putative nad(p)h:fmn oxidoreductase (pg0310) from porphyromonas gingivalis w83 at 1.70 A resolution==
-		+	<StructureSection load='3ge5' size='340' side='right' caption='[[3ge5]], [[Resolution\|resolution]] 1.70Å' scene=''>
-	~~{{STRUCTURE_3ge5\| PDB=3ge5 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3ge5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis_w83 Porphyromonas gingivalis w83]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GE5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GE5 FirstGlance]. <br>
-	===Crystal structure of a putative nad(p)h:fmn oxidoreductase (pg0310) from porphyromonas gingivalis w83 at 1.70 A resolution===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
-		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_904626.1, PG_0310 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 Porphyromonas gingivalis W83])</td></tr>
-	==~~About this Structure~~==	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ge5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ge5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ge5 RCSB], [http://www.ebi.ac.uk/pdbsum/3ge5 PDBsum], [http://www.topsan.org/Proteins/JCSG/3ge5 TOPSAN]</span></td></tr>
-	[[3ge5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis_w83 Porphyromonas gingivalis w83]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GE5 OCA].	+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ge/3ge5_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Porphyromonas gingivalis w83]]		[[Category: Porphyromonas gingivalis w83]]
-	[[Category: ~~JCSG, Joint Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
-	[[Category: Joint center for structural genomic]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi-2]]~~	+
-	~~[[Category: Structural genomic~~]]	+

OCA at 14:27, 20 February 2013

2013-02-20T14:27:17Z

←Older revision		Revision as of 14:27, 20 February 2013
Line 1:		Line 1:
	[[Image:3ge5.png\|left\|200px]]		[[Image:3ge5.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3ge5", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3ge5\| PDB=3ge5 \| SCENE= }}		{{STRUCTURE_3ge5\| PDB=3ge5 \| SCENE= }}

Line 16:		Line 10:
	[[Category: Porphyromonas gingivalis w83]]		[[Category: Porphyromonas gingivalis w83]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
		+	[[Category: Jcsg]]
		+	[[Category: Joint center for structural genomic]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-2]]
		+	[[Category: Structural genomic]]

OCA: Protected "3ge5" [edit=sysop:move=sysop]

2011-03-23T05:51:09Z

Protected "3ge5" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:51, 23 March 2011

OCA at 05:51, 23 March 2011

2011-03-23T05:51:07Z

←Older revision		Revision as of 05:51, 23 March 2011
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3ge5.png\|left\|200px]]

-	The ~~entry 3ge5~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3ge5", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3ge5\| PDB=3ge5 \| SCENE= }}

-	~~Authors~~: ~~Joint Center for Structural Genomics~~ (~~JCSG~~)	+	===Crystal structure of a putative nad(p)h:fmn oxidoreductase (pg0310) from porphyromonas gingivalis w83 at 1.70 A resolution===

-	Description: Crystal structure of putative NAD(P)H:FMN oxidoreductase (NP_904626.1) from PORPHYROMONAS GINGIVALIS W83 at 1.70 A resolution

-	~~''Page seeded by~~ [http://oca.weizmann.ac.il/oca OCA ] ~~on Wed Mar 11 11~~:11:~~31 2009''~~	+	==About this Structure==
		+	[[3ge5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis_w83 Porphyromonas gingivalis w83]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GE5 OCA].
		+	[[Category: Porphyromonas gingivalis w83]]
		+	[[Category: JCSG, Joint Center for Structural Genomics.]]

OCA: New page: '''Unreleased structure''' The entry 3ge5 is ON HOLD Authors: Joint Center for Structural Genomics (JCSG) Description: Crystal structure of putative NAD(P)H:FMN oxidoreductase (NP_9046...

2009-03-11T09:11:31Z

New page: '''Unreleased structure''' The entry 3ge5 is ON HOLD Authors: Joint Center for Structural Genomics (JCSG) Description: Crystal structure of putative NAD(P)H:FMN oxidoreductase (NP_9046...

New page

'''Unreleased structure'''

The entry 3ge5 is ON HOLD

Authors: Joint Center for Structural Genomics (JCSG)

Description: Crystal structure of putative NAD(P)H:FMN oxidoreductase (NP_904626.1) from PORPHYROMONAS GINGIVALIS W83 at 1.70 A resolution

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 11 11:11:31 2009''