3gek - Revision history

OCA at 07:04, 6 September 2023

2023-09-06T07:04:24Z

←Older revision		Revision as of 07:04, 6 September 2023
Line 3:		Line 3:
	<StructureSection load='3gek' size='340' side='right'caption='[[3gek]], [[Resolution\|resolution]] 2.24Å' scene=''>		<StructureSection load='3gek' size='340' side='right'caption='[[3gek]], [[Resolution\|resolution]] 2.24Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gek]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Lacla Lacla~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GEK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GEK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gek]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._lactis_Il1403 Lactococcus lactis subsp. lactis Il1403]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GEK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GEK FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=MSE:SELENOMETHIONINE'>MSE</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.24Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~L131, L131392, LL0726, yhdA ([https~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272623 LACLA])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gek OCA], [https://pdbe.org/3gek PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gek RCSB], [https://www.ebi.ac.uk/pdbsum/3gek PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gek ProSAT], [https://www.topsan.org/Proteins/NESGC/3gek TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gek OCA], [https://pdbe.org/3gek PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gek RCSB], [https://www.ebi.ac.uk/pdbsum/3gek PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gek ProSAT], [https://www.topsan.org/Proteins/NESGC/3gek TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9CHK5_LACLA Q9CHK5_LACLA]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Lacla~~]]	+	[[Category: Lactococcus lactis subsp. lactis Il1403]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Acton~~, T B~~]]	+	[[Category: Acton TB]]
-	[[Category: Ciccosanti, C]]	+	[[Category: Ciccosanti C]]
-	[[Category: Everett~~, J K~~]]	+	[[Category: Everett JK]]
-	[[Category: Foote~~, E L~~]]	+	[[Category: Foote EL]]
-	[[Category: Hunt~~, J F~~]]	+	[[Category: Hunt JF]]
-	[[Category: Janjua, H]]	+	[[Category: Janjua H]]
-	[[Category: Kuzin~~, A P~~]]	+	[[Category: Kuzin AP]]
-	[[Category: Lee, D]]	+	[[Category: Lee D]]
-	[[Category: Montelione~~, G T]]~~	+	[[Category: Montelione GT]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Nair R]]
-	[[Category: Nair, R]]	+	[[Category: Rost B]]
-	[[Category: Rost, B]]	+	[[Category: Seetharaman R]]
-	[[Category: Seetharaman, R]]	+	[[Category: Su M]]
-	[[Category: Su, M]]	+	[[Category: Tong L]]
-	[[Category: Tong, L]]	+	[[Category: Xiao R]]
-	[[Category: Xiao, R]]	+
-	~~[[Category: Kr113]]~~	+
-	~~[[Category: Lactococcus lacti]]~~	+
-	~~[[Category: Nesg]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Q9chk5_lacla]]~~	+
-	~~[[Category: Unknown function]]~~	+
-	~~[[Category: Yhda~~]]	+

OCA at 20:05, 20 October 2021

2021-10-20T20:05:44Z

←Older revision		Revision as of 20:05, 20 October 2021
Line 1:		Line 1:

	==Crystal structure of putative thioesterase yhdA from Lactococcus lactis. Northeast Structural Genomics Consortium Target KR113==		==Crystal structure of putative thioesterase yhdA from Lactococcus lactis. Northeast Structural Genomics Consortium Target KR113==
-	<StructureSection load='3gek' size='340' side='right' caption='[[3gek]], [[Resolution\|resolution]] 2.24Å' scene=''>	+	<StructureSection load='3gek' size='340' side='right'caption='[[3gek]], [[Resolution\|resolution]] 2.24Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gek]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Lacla Lacla]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GEK OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3GEK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gek]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Lacla Lacla]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GEK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GEK FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">L131, L131392, LL0726, yhdA ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272623 LACLA])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">L131, L131392, LL0726, yhdA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272623 LACLA])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3gek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gek OCA], [~~http~~://pdbe.org/3gek PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3gek RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3gek PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3gek ProSAT], [~~http~~://www.topsan.org/Proteins/NESGC/3gek TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gek OCA], [https://pdbe.org/3gek PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gek RCSB], [https://www.ebi.ac.uk/pdbsum/3gek PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gek ProSAT], [https://www.topsan.org/Proteins/NESGC/3gek TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Lacla]]		[[Category: Lacla]]
		+	[[Category: Large Structures]]
	[[Category: Acton, T B]]		[[Category: Acton, T B]]
	[[Category: Ciccosanti, C]]		[[Category: Ciccosanti, C]]

OCA at 05:32, 7 December 2018

2018-12-07T05:32:41Z

←Older revision		Revision as of 05:32, 7 December 2018
Line 1:		Line 1:
		+
	==Crystal structure of putative thioesterase yhdA from Lactococcus lactis. Northeast Structural Genomics Consortium Target KR113==		==Crystal structure of putative thioesterase yhdA from Lactococcus lactis. Northeast Structural Genomics Consortium Target KR113==
	<StructureSection load='3gek' size='340' side='right' caption='[[3gek]], [[Resolution\|resolution]] 2.24Å' scene=''>		<StructureSection load='3gek' size='340' side='right' caption='[[3gek]], [[Resolution\|resolution]] 2.24Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">L131, L131392, LL0726, yhdA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272623 LACLA])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">L131, L131392, LL0726, yhdA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272623 LACLA])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gek OCA], [http://pdbe.org/3gek PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gek RCSB], [http://www.ebi.ac.uk/pdbsum/3gek PDBsum], [http://www.topsan.org/Proteins/NESGC/3gek TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gek OCA], [http://pdbe.org/3gek PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gek RCSB], [http://www.ebi.ac.uk/pdbsum/3gek PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gek ProSAT], [http://www.topsan.org/Proteins/NESGC/3gek TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ge/3gek_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ge/3gek_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 20:44, 7 February 2016

2016-02-07T20:44:56Z

←Older revision		Revision as of 20:44, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='3gek' size='340' side='right' caption='[[3gek]], [[Resolution\|resolution]] 2.24Å' scene=''>		<StructureSection load='3gek' size='340' side='right' caption='[[3gek]], [[Resolution\|resolution]] 2.24Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gek]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Lactococcus_lactis_subsp._lactis Lactococcus lactis subsp. lactis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GEK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GEK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gek]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lacla Lacla]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GEK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GEK FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">L131, L131392, LL0726, yhdA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~1360 Lactococcus lactis subsp. lactis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">L131, L131392, LL0726, yhdA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272623 LACLA])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gek OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gek RCSB], [http://www.ebi.ac.uk/pdbsum/3gek PDBsum], [http://www.topsan.org/Proteins/NESGC/3gek TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gek OCA], [http://pdbe.org/3gek PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gek RCSB], [http://www.ebi.ac.uk/pdbsum/3gek PDBsum], [http://www.topsan.org/Proteins/NESGC/3gek TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gek ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Lactococcus lactis subsp. lactis~~]]	+	[[Category: Lacla]]
	[[Category: Acton, T B]]		[[Category: Acton, T B]]
	[[Category: Ciccosanti, C]]		[[Category: Ciccosanti, C]]

OCA at 18:08, 24 December 2014

2014-12-24T18:08:39Z

←Older revision		Revision as of 18:08, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3gek]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._lactis Lactococcus lactis subsp. lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GEK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GEK FirstGlance]. <br>		<table><tr><td colspan='2'>[[3gek]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._lactis Lactococcus lactis subsp. lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GEK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GEK FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">L131, L131392, LL0726, yhdA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1360 Lactococcus lactis subsp. lactis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">L131, L131392, LL0726, yhdA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1360 Lactococcus lactis subsp. lactis])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gek OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gek RCSB], [http://www.ebi.ac.uk/pdbsum/3gek PDBsum], [http://www.topsan.org/Proteins/NESGC/3gek TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gek OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gek RCSB], [http://www.ebi.ac.uk/pdbsum/3gek PDBsum], [http://www.topsan.org/Proteins/NESGC/3gek TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Lactococcus lactis subsp. lactis]]		[[Category: Lactococcus lactis subsp. lactis]]
-	[[Category: Acton, T B.]]	+	[[Category: Acton, T B]]
-	[[Category: Ciccosanti, C.]]	+	[[Category: Ciccosanti, C]]
-	[[Category: Everett, J K.]]	+	[[Category: Everett, J K]]
-	[[Category: Foote, E L.]]	+	[[Category: Foote, E L]]
-	[[Category: Hunt, J F.]]	+	[[Category: Hunt, J F]]
-	[[Category: Janjua, H.]]	+	[[Category: Janjua, H]]
-	[[Category: Kuzin, A P.]]	+	[[Category: Kuzin, A P]]
-	[[Category: Lee, D.]]	+	[[Category: Lee, D]]
-	[[Category: Montelione, G T.]]	+	[[Category: Montelione, G T]]
-	[[Category: ~~NESG, Northeast~~ Structural ~~Genomics Consortium.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Nair, R.]]	+	[[Category: Nair, R]]
-	[[Category: Rost, B.]]	+	[[Category: Rost, B]]
-	[[Category: Seetharaman, R.]]	+	[[Category: Seetharaman, R]]
-	[[Category: Su, M.]]	+	[[Category: Su, M]]
-	[[Category: Tong, L.]]	+	[[Category: Tong, L]]
-	[[Category: Xiao, R.]]	+	[[Category: Xiao, R]]
	[[Category: Kr113]]		[[Category: Kr113]]
	[[Category: Lactococcus lacti]]		[[Category: Lactococcus lacti]]
	[[Category: Nesg]]		[[Category: Nesg]]
-	[[Category: ~~Northeast structural genomics consortium]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi-2~~]]	+
	[[Category: Q9chk5_lacla]]		[[Category: Q9chk5_lacla]]
-	[[Category: Structural genomic]]
-	[[Category: Structure genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
	[[Category: Yhda]]		[[Category: Yhda]]

OCA at 13:04, 29 September 2014

2014-09-29T13:04:53Z

←Older revision		Revision as of 13:04, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:3gek.png\|left\|200px]]~~	+	==Crystal structure of putative thioesterase yhdA from Lactococcus lactis. Northeast Structural Genomics Consortium Target KR113==
-		+	<StructureSection load='3gek' size='340' side='right' caption='[[3gek]], [[Resolution\|resolution]] 2.24Å' scene=''>
-	~~{{STRUCTURE_3gek\| PDB=3gek \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3gek]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._lactis Lactococcus lactis subsp. lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GEK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GEK FirstGlance]. <br>
-	===Crystal structure of putative thioesterase yhdA from Lactococcus lactis. Northeast Structural Genomics Consortium Target KR113===	+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">L131, L131392, LL0726, yhdA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1360 Lactococcus lactis subsp. lactis])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gek OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gek RCSB], [http://www.ebi.ac.uk/pdbsum/3gek PDBsum], [http://www.topsan.org/Proteins/NESGC/3gek TOPSAN]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[3gek]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._lactis Lactococcus lactis subsp. lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GEK OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ge/3gek_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Lactococcus lactis subsp. lactis]]		[[Category: Lactococcus lactis subsp. lactis]]
	[[Category: Acton, T B.]]		[[Category: Acton, T B.]]

OCA: Protected "3gek" [edit=sysop:move=sysop]

2012-10-21T11:23:47Z

Protected "3gek" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:23, 21 October 2012

OCA at 11:23, 21 October 2012

2012-10-21T11:23:45Z

←Older revision		Revision as of 11:23, 21 October 2012
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3gek.png\|left\|200px]]

-	~~The entry~~ 3gek ~~is ON HOLD~~	+	{{STRUCTURE_3gek\| PDB=3gek \| SCENE= }}

-	~~Authors: Kuzin, A~~.~~P., Su, M., Seetharaman, R., Lee, D., Foote, E.L., Ciccosanti, C., Janjua, H., Xiao, R., Nair, R., Rost, B., Acton, T.B., Everett, J.K., Montelione, G.T., Hunt, J.F., Tong, L.,~~ Northeast Structural Genomics Consortium ~~(NESG)~~	+	===Crystal structure of putative thioesterase yhdA from Lactococcus lactis. Northeast Structural Genomics Consortium Target KR113===

-	Description: Crystal structure of putative thioesterase yhdA from Lactococcus lactis. Northeast Structural Genomics Consortium Target KR113

-	~~''Page seeded by~~ [http://oca.weizmann.ac.il/oca OCA ] ~~on Sun Mar 22 10~~:24:~~28 2009''~~	+	==About this Structure==
		+	[[3gek]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._lactis Lactococcus lactis subsp. lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GEK OCA].
		+	[[Category: Lactococcus lactis subsp. lactis]]
		+	[[Category: Acton, T B.]]
		+	[[Category: Ciccosanti, C.]]
		+	[[Category: Everett, J K.]]
		+	[[Category: Foote, E L.]]
		+	[[Category: Hunt, J F.]]
		+	[[Category: Janjua, H.]]
		+	[[Category: Kuzin, A P.]]
		+	[[Category: Lee, D.]]
		+	[[Category: Montelione, G T.]]
		+	[[Category: NESG, Northeast Structural Genomics Consortium.]]
		+	[[Category: Nair, R.]]
		+	[[Category: Rost, B.]]
		+	[[Category: Seetharaman, R.]]
		+	[[Category: Su, M.]]
		+	[[Category: Tong, L.]]
		+	[[Category: Xiao, R.]]
		+	[[Category: Kr113]]
		+	[[Category: Lactococcus lacti]]
		+	[[Category: Nesg]]
		+	[[Category: Northeast structural genomics consortium]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-2]]
		+	[[Category: Q9chk5_lacla]]
		+	[[Category: Structural genomic]]
		+	[[Category: Structure genomic]]
		+	[[Category: Unknown function]]
		+	[[Category: Yhda]]

OCA at 08:24, 22 March 2009

2009-03-22T08:24:28Z

←Older revision		Revision as of 08:24, 22 March 2009
Line 3:		Line 3:
	The entry 3gek is ON HOLD		The entry 3gek is ON HOLD

-	Authors: ~~Alex~~ Kuzin, ~~Min~~ Su, ~~Raman~~ Seetharaman, ~~Dan~~ Lee, ~~Erica L~~. Foote, ~~Colleen~~ Ciccosanti, ~~Haleema~~ Janjua, ~~Rong~~ Xiao, ~~Rajest~~ Nair, ~~Burkhard~~ Rost, ~~Tom~~ Acton, ~~John K~~. Everett, G. Montelione, ~~John~~ Hunt, ~~Liang~~ Tong, Northeast Structural Genomics Consortium (NESG)	+	Authors: Kuzin, A.P., Su, M., Seetharaman, R., Lee, D., Foote, E.L., Ciccosanti, C., Janjua, H., Xiao, R., Nair, R., Rost, B., Acton, T.B., Everett, J.K., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

-	Description: ~~X-Ray Structure~~ of putative thioesterase yhdA from Lactococcus lactis. Northeast Structural Genomics Consortium Target KR113	+	Description: Crystal structure of putative thioesterase yhdA from Lactococcus lactis. Northeast Structural Genomics Consortium Target KR113

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed~~ Mar ~~11 11~~:11:35 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 22 10:24:28 2009''

OCA: New page: '''Unreleased structure''' The entry 3gek is ON HOLD Authors: Alex Kuzin, Min Su, Raman Seetharaman, Dan Lee, Erica L. Foote, Colleen Ciccosanti, Haleema Janjua, Rong Xiao, Rajest Nair,...

2009-03-11T09:11:35Z

New page: '''Unreleased structure''' The entry 3gek is ON HOLD Authors: Alex Kuzin, Min Su, Raman Seetharaman, Dan Lee, Erica L. Foote, Colleen Ciccosanti, Haleema Janjua, Rong Xiao, Rajest Nair,...

New page

'''Unreleased structure'''

The entry 3gek is ON HOLD

Authors: Alex Kuzin, Min Su, Raman Seetharaman, Dan Lee, Erica L. Foote, Colleen Ciccosanti, Haleema Janjua, Rong Xiao, Rajest Nair, Burkhard Rost, Tom Acton, John K. Everett, G. Montelione, John Hunt, Liang Tong, Northeast Structural Genomics Consortium (NESG)

Description: X-Ray Structure of putative thioesterase yhdA from Lactococcus lactis. Northeast Structural Genomics Consortium Target KR113

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 11 11:11:35 2009''