3gvi - Revision history

OCA at 07:13, 6 September 2023

2023-09-06T07:13:03Z

←Older revision		Revision as of 07:13, 6 September 2023
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	<StructureSection load='3gvi' size='340' side='right'caption='[[3gvi]], [[Resolution\|resolution]] 2.25Å' scene=''>		<StructureSection load='3gvi' size='340' side='right'caption='[[3gvi]], [[Resolution\|resolution]] 2.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gvi]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Brua2 Brua2~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GVI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gvi]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Brucella_abortus_2308 Brucella abortus 2308]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GVI FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ADP:ADENOSINE~~-~~5-DIPHOSPHATE'>ADP</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.25Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>~~[[~~Related_structure~~\|~~Related:~~]]~~</b></td><td class="sblockDat"><div style='overflow: auto~~; ~~max-height: 3em;'>[[3gvh\|3gvh]]</div>~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>mdh, BAB1_1927 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~359391 BRUA2])</td~~><~~/tr>~~	+
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[https://en.wikipedia.org/wiki/Malate_dehydrogenase Malate dehydrogenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.37 1.1.1.37]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvi OCA], [https://pdbe.org/3gvi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gvi RCSB], [https://www.ebi.ac.uk/pdbsum/3gvi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gvi ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvi OCA], [https://pdbe.org/3gvi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gvi RCSB], [https://www.ebi.ac.uk/pdbsum/3gvi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gvi ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/MDH_BRUA2 MDH_BRUA2]] Catalyzes the reversible oxidation of malate to oxaloacetate.[HAMAP-Rule:MF_00487]	+	[https://www.uniprot.org/uniprot/MDH_BRUA2 MDH_BRUA2] Catalyzes the reversible oxidation of malate to oxaloacetate.[HAMAP-Rule:MF_00487]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Brua2~~]]	+	[[Category: Brucella abortus 2308]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Malate dehydrogenase]]
-	[[Category: Structural genomic]]
-	[[Category: Brucella melitensis]]
-	[[Category: Lactate/malate dehydrogenase]]
-	[[Category: Nad]]
-	[[Category: Oxidoreductase]]
-	[[Category: Ssgcid]]
-	[[Category: Tricarboxylic acid cycle]]

OCA at 07:55, 16 March 2022

2022-03-16T07:55:47Z

←Older revision		Revision as of 07:55, 16 March 2022
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	==Crystal structure of Lactate/malate dehydrogenase from Brucella melitensis in complex with ADP==		==Crystal structure of Lactate/malate dehydrogenase from Brucella melitensis in complex with ADP==
-	<StructureSection load='3gvi' size='340' side='right' caption='[[3gvi]], [[Resolution\|resolution]] 2.25Å' scene=''>	+	<StructureSection load='3gvi' size='340' side='right'caption='[[3gvi]], [[Resolution\|resolution]] 2.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gvi]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Brua2 Brua2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3GVI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gvi]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Brua2 Brua2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GVI FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3gvh\|3gvh]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3gvh\|3gvh]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mdh, BAB1_1927 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=359391 BRUA2])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mdh, BAB1_1927 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=359391 BRUA2])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Malate_dehydrogenase Malate dehydrogenase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.37 1.1.1.37] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Malate_dehydrogenase Malate dehydrogenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.37 1.1.1.37] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3gvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvi OCA], [~~http~~://pdbe.org/3gvi PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3gvi RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3gvi PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3gvi ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvi OCA], [https://pdbe.org/3gvi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gvi RCSB], [https://www.ebi.ac.uk/pdbsum/3gvi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gvi ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/MDH_BRUA2 MDH_BRUA2]] Catalyzes the reversible oxidation of malate to oxaloacetate.[HAMAP-Rule:MF_00487]	+	[[https://www.uniprot.org/uniprot/MDH_BRUA2 MDH_BRUA2]] Catalyzes the reversible oxidation of malate to oxaloacetate.[HAMAP-Rule:MF_00487]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 24:

	==See Also==		==See Also==
-	*[[Malate ~~dehydrogenase~~\|Malate ~~dehydrogenase~~]]	+	*[[Malate Dehydrogenase 3D structures\|Malate Dehydrogenase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Brua2]]		[[Category: Brua2]]
		+	[[Category: Large Structures]]
	[[Category: Malate dehydrogenase]]		[[Category: Malate dehydrogenase]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 05:46, 7 December 2018

2018-12-07T05:46:43Z

←Older revision		Revision as of 05:46, 7 December 2018
Line 1:		Line 1:
		+
	==Crystal structure of Lactate/malate dehydrogenase from Brucella melitensis in complex with ADP==		==Crystal structure of Lactate/malate dehydrogenase from Brucella melitensis in complex with ADP==
	<StructureSection load='3gvi' size='340' side='right' caption='[[3gvi]], [[Resolution\|resolution]] 2.25Å' scene=''>		<StructureSection load='3gvi' size='340' side='right' caption='[[3gvi]], [[Resolution\|resolution]] 2.25Å' scene=''>
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	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mdh, BAB1_1927 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=359391 BRUA2])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mdh, BAB1_1927 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=359391 BRUA2])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malate_dehydrogenase Malate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.37 1.1.1.37] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malate_dehydrogenase Malate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.37 1.1.1.37] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvi OCA], [http://pdbe.org/3gvi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gvi RCSB], [http://www.ebi.ac.uk/pdbsum/3gvi PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvi OCA], [http://pdbe.org/3gvi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gvi RCSB], [http://www.ebi.ac.uk/pdbsum/3gvi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gvi ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 15:		Line 16:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gv/3gvi_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gv/3gvi_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 13:27, 7 February 2016

2016-02-07T13:27:37Z

←Older revision		Revision as of 13:27, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='3gvi' size='340' side='right' caption='[[3gvi]], [[Resolution\|resolution]] 2.25Å' scene=''>		<StructureSection load='3gvi' size='340' side='right' caption='[[3gvi]], [[Resolution\|resolution]] 2.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gvi]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Brucella_melitensis_biovar_abortus_2308 Brucella melitensis biovar abortus 2308~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GVI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gvi]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Brua2 Brua2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GVI FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3gvh\|3gvh]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3gvh\|3gvh]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mdh, BAB1_1927 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=359391 ~~Brucella melitensis biovar Abortus 2308~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mdh, BAB1_1927 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=359391 BRUA2])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malate_dehydrogenase Malate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.37 1.1.1.37] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malate_dehydrogenase Malate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.37 1.1.1.37] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gvi RCSB], [http://www.ebi.ac.uk/pdbsum/3gvi PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvi OCA], [http://pdbe.org/3gvi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gvi RCSB], [http://www.ebi.ac.uk/pdbsum/3gvi PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 19:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gvi ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

Line 26:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Brucella melitensis biovar abortus 2308~~]]	+	[[Category: Brua2]]
	[[Category: Malate dehydrogenase]]		[[Category: Malate dehydrogenase]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 15:25, 24 December 2014

2014-12-24T15:25:13Z

←Older revision		Revision as of 15:25, 24 December 2014
Line 9:		Line 9:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gvi RCSB], [http://www.ebi.ac.uk/pdbsum/3gvi PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gvi RCSB], [http://www.ebi.ac.uk/pdbsum/3gvi PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/MDH_BRUA2 MDH_BRUA2]] Catalyzes the reversible oxidation of malate to oxaloacetate.[HAMAP-Rule:MF_00487]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 18:32, 21 December 2014

2014-12-21T18:32:36Z

←Older revision		Revision as of 18:32, 21 December 2014
Line 1:		Line 1:
-	~~[[Image:3gvi.png\|left\|200px]]~~	+	==Crystal structure of Lactate/malate dehydrogenase from Brucella melitensis in complex with ADP==
-		+	<StructureSection load='3gvi' size='340' side='right' caption='[[3gvi]], [[Resolution\|resolution]] 2.25Å' scene=''>
-	~~{{STRUCTURE_3gvi\| PDB=3gvi \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3gvi]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Brucella_melitensis_biovar_abortus_2308 Brucella melitensis biovar abortus 2308]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GVI FirstGlance]. <br>
-	===Crystal structure of Lactate/malate dehydrogenase from Brucella melitensis in complex with ADP===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3gvh\|3gvh]]</td></tr>
-		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mdh, BAB1_1927 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=359391 Brucella melitensis biovar Abortus 2308])</td></tr>
-	==~~About this Structure~~==	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malate_dehydrogenase Malate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.37 1.1.1.37] </span></td></tr>
-	[[3gvi]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Brucella_melitensis_biovar_abortus_2308 Brucella melitensis biovar abortus 2308]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVI OCA].	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gvi RCSB], [http://www.ebi.ac.uk/pdbsum/3gvi PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gv/3gvi_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
-	*[[Johnson sandbox 1\|Johnson sandbox 1]]
	*[[Malate dehydrogenase\|Malate dehydrogenase]]		*[[Malate dehydrogenase\|Malate dehydrogenase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Brucella melitensis biovar abortus 2308]]		[[Category: Brucella melitensis biovar abortus 2308]]
	[[Category: Malate dehydrogenase]]		[[Category: Malate dehydrogenase]]
-	[[Category: ~~SSGCID, Seattle~~ Structural ~~Genomics Center for Infectious Disease.~~]]	+	[[Category: Structural genomic]]
	[[Category: Brucella melitensis]]		[[Category: Brucella melitensis]]
	[[Category: Lactate/malate dehydrogenase]]		[[Category: Lactate/malate dehydrogenase]]
	[[Category: Nad]]		[[Category: Nad]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
-	[[Category: Seattle structural genomics center for infectious disease]]
	[[Category: Ssgcid]]		[[Category: Ssgcid]]
-	[[Category: Structural genomic]]
	[[Category: Tricarboxylic acid cycle]]		[[Category: Tricarboxylic acid cycle]]

OCA at 06:47, 20 October 2012

2012-10-20T06:47:02Z

←Older revision		Revision as of 06:47, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
-	[[3gvi]] is a 6 chain structure ~~of [[Johnson sandbox 1]] and [[Malate dehydrogenase]]~~ with sequence from [http://en.wikipedia.org/wiki/Brucella_melitensis_biovar_abortus_2308 Brucella melitensis biovar abortus 2308]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVI OCA].	+	[[3gvi]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Brucella_melitensis_biovar_abortus_2308 Brucella melitensis biovar abortus 2308]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVI OCA].

	==See Also==		==See Also==

OCA at 14:16, 25 July 2012

2012-07-25T14:16:27Z

←Older revision		Revision as of 14:16, 25 July 2012
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	[[Image:3gvi.png\|left\|200px]]		[[Image:3gvi.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3gvi", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_3gvi\| PDB=3gvi \| SCENE= }}		{{STRUCTURE_3gvi\| PDB=3gvi \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	[[3gvi]] is a 6 chain structure of [[Malate dehydrogenase]] with sequence from [http://en.wikipedia.org/wiki/Brucella_melitensis_biovar_abortus_2308 Brucella melitensis biovar abortus 2308]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVI OCA].	+	[[3gvi]] is a 6 chain structure of [[Johnson sandbox 1]] and [[Malate dehydrogenase]] with sequence from [http://en.wikipedia.org/wiki/Brucella_melitensis_biovar_abortus_2308 Brucella melitensis biovar abortus 2308]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVI OCA].

	==See Also==		==See Also==
-	*[[Malate dehydrogenase]]	+	*[[Johnson sandbox 1\|Johnson sandbox 1]]
		+	*[[Malate dehydrogenase\|Malate dehydrogenase]]
	[[Category: Brucella melitensis biovar abortus 2308]]		[[Category: Brucella melitensis biovar abortus 2308]]
	[[Category: Malate dehydrogenase]]		[[Category: Malate dehydrogenase]]

OCA: Protected "3gvi" [edit=sysop:move=sysop]

2010-12-27T01:41:43Z

Protected "3gvi" [edit=sysop:move=sysop]

←Older revision

Revision as of 01:41, 27 December 2010

OCA at 01:41, 27 December 2010

2010-12-27T01:41:42Z

←Older revision		Revision as of 01:41, 27 December 2010
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-	~~{{Seed}}~~	+	[[Image:3gvi.png\|left\|200px]]
-	[[Image:3gvi.~~jpg~~\|left\|200px]]	+

	<!--		<!--
Line 14:		Line 13:

	==About this Structure==		==About this Structure==
-	~~3GVI~~ is a 6 ~~chains~~ structure of ~~sequences~~ from [http://en.wikipedia.org/wiki/Brucella_melitensis_biovar_abortus_2308 Brucella melitensis biovar abortus 2308]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVI OCA].	+	[[3gvi]] is a 6 chain structure of [[Malate dehydrogenase]] with sequence from [http://en.wikipedia.org/wiki/Brucella_melitensis_biovar_abortus_2308 Brucella melitensis biovar abortus 2308]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVI OCA].
		+
		+	==See Also==
		+	*[[Malate dehydrogenase]]
	[[Category: Brucella melitensis biovar abortus 2308]]		[[Category: Brucella melitensis biovar abortus 2308]]
	[[Category: Malate dehydrogenase]]		[[Category: Malate dehydrogenase]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Tricarboxylic acid cycle]]		[[Category: Tricarboxylic acid cycle]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 15 10:38:27 2009''