3hhy - Revision history

OCA at 07:21, 6 September 2023

2023-09-06T07:21:57Z

←Older revision		Revision as of 07:21, 6 September 2023
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	<StructureSection load='3hhy' size='340' side='right'caption='[[3hhy]], [[Resolution\|resolution]] 1.55Å' scene=''>		<StructureSection load='3hhy' size='340' side='right'caption='[[3hhy]], [[Resolution\|resolution]] 1.55Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3hhy]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Rhodococcus_opacus Rhodococcus opacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HHY OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=3HHY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3hhy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_opacus Rhodococcus opacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HHY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HHY FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6PL:(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM+4-OXIDE'>6PL</scene>, <scene name='pdbligand=CAQ:CATECHOL'>CAQ</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.55Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3hgi\|3hgi]], [[3hhx\|3hhx]]</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6PL:(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM+4-OXIDE'>6PL</scene>, <scene name='pdbligand=CAQ:CATECHOL'>CAQ</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catechol_1,2-dioxygenase Catechol 1,2-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.1 1.13.11.1] </span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hhy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hhy OCA], [https://pdbe.org/3hhy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hhy RCSB], [https://www.ebi.ac.uk/pdbsum/3hhy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hhy ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=3hhy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hhy OCA], [~~http~~://pdbe.org/3hhy PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3hhy RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3hhy PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3hhy ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/CATA_RHOOP CATA_RHOOP]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Catechol 1,2-dioxygenase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Rhodococcus opacus]]		[[Category: Rhodococcus opacus]]
-	[[Category: Briganti, F]]	+	[[Category: Briganti F]]
-	[[Category: Ferraroni, M]]	+	[[Category: Ferraroni M]]
-	[[Category: Kolomytseva, M]]	+	[[Category: Kolomytseva M]]
-	[[Category: Matera, I]]	+	[[Category: Matera I]]
-	[[Category: Scozzafava, A]]	+	[[Category: Scozzafava A]]
-	~~[[Category: Aromatic hydrocarbons catabolism]]~~	+
-	~~[[Category: Beta-sandwich]]~~	+
-	~~[[Category: Dioxygenase]]~~	+
-	~~[[Category: Iron]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Oxidoreductase~~]]	+

OCA at 10:48, 16 September 2020

2020-09-16T10:48:21Z

←Older revision		Revision as of 10:48, 16 September 2020
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	==Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with catechol==		==Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with catechol==
-	<StructureSection load='3hhy' size='340' side='right' caption='[[3hhy]], [[Resolution\|resolution]] 1.55Å' scene=''>	+	<StructureSection load='3hhy' size='340' side='right'caption='[[3hhy]], [[Resolution\|resolution]] 1.55Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3hhy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodococcus_opacus Rhodococcus opacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HHY OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3HHY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3hhy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodococcus_opacus Rhodococcus opacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HHY OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3HHY FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=6PL:(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM+4-OXIDE'>6PL</scene>, <scene name='pdbligand=CAQ:CATECHOL'>CAQ</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6PL:(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM+4-OXIDE'>6PL</scene>, <scene name='pdbligand=CAQ:CATECHOL'>CAQ</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3hgi\|3hgi]], [[3hhx\|3hhx]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3hgi\|3hgi]], [[3hhx\|3hhx]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catechol_1,2-dioxygenase Catechol 1,2-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.1 1.13.11.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catechol_1,2-dioxygenase Catechol 1,2-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.1 1.13.11.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3hhy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hhy OCA], [http://pdbe.org/3hhy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hhy RCSB], [http://www.ebi.ac.uk/pdbsum/3hhy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3hhy ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3hhy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hhy OCA], [http://pdbe.org/3hhy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hhy RCSB], [http://www.ebi.ac.uk/pdbsum/3hhy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3hhy ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 30:		Line 30:

	==See Also==		==See Also==
-	*[[Dioxygenase\|Dioxygenase]]	+	*[[Dioxygenase 3D structures\|Dioxygenase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 36:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Catechol 1,2-dioxygenase]]		[[Category: Catechol 1,2-dioxygenase]]
		+	[[Category: Large Structures]]
	[[Category: Rhodococcus opacus]]		[[Category: Rhodococcus opacus]]
	[[Category: Briganti, F]]		[[Category: Briganti, F]]

OCA at 08:03, 12 December 2018

2018-12-12T08:03:15Z

←Older revision		Revision as of 08:03, 12 December 2018
Line 1:		Line 1:
		+
	==Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with catechol==		==Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with catechol==
	<StructureSection load='3hhy' size='340' side='right' caption='[[3hhy]], [[Resolution\|resolution]] 1.55Å' scene=''>		<StructureSection load='3hhy' size='340' side='right' caption='[[3hhy]], [[Resolution\|resolution]] 1.55Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3hgi\|3hgi]], [[3hhx\|3hhx]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3hgi\|3hgi]], [[3hhx\|3hhx]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catechol_1,2-dioxygenase Catechol 1,2-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.1 1.13.11.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catechol_1,2-dioxygenase Catechol 1,2-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.1 1.13.11.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hhy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hhy OCA], [http://pdbe.org/3hhy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hhy RCSB], [http://www.ebi.ac.uk/pdbsum/3hhy PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hhy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hhy OCA], [http://pdbe.org/3hhy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hhy RCSB], [http://www.ebi.ac.uk/pdbsum/3hhy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3hhy ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hh/3hhy_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hh/3hhy_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 23:42, 8 February 2016

2016-02-08T23:42:55Z

←Older revision		Revision as of 23:42, 8 February 2016
Line 6:		Line 6:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3hgi\|3hgi]], [[3hhx\|3hhx]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3hgi\|3hgi]], [[3hhx\|3hhx]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catechol_1,2-dioxygenase Catechol 1,2-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.1 1.13.11.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catechol_1,2-dioxygenase Catechol 1,2-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.1 1.13.11.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hhy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hhy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hhy RCSB], [http://www.ebi.ac.uk/pdbsum/3hhy PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hhy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hhy OCA], [http://pdbe.org/3hhy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hhy RCSB], [http://www.ebi.ac.uk/pdbsum/3hhy PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hhy ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3hhy" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 09:18, 8 December 2014

2014-12-08T09:18:32Z

←Older revision		Revision as of 09:18, 8 December 2014
Line 1:		Line 1:
-	[[~~Image:~~3hhy.~~png~~\|~~left~~\|200px]]	+	==Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with catechol==
		+	<StructureSection load='3hhy' size='340' side='right' caption='[[3hhy]], [[Resolution\|resolution]] 1.55Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3hhy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodococcus_opacus Rhodococcus opacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HHY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HHY FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=6PL:(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM+4-OXIDE'>6PL</scene>, <scene name='pdbligand=CAQ:CATECHOL'>CAQ</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3hgi\|3hgi]], [[3hhx\|3hhx]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catechol_1,2-dioxygenase Catechol 1,2-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.1 1.13.11.1] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hhy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hhy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hhy RCSB], [http://www.ebi.ac.uk/pdbsum/3hhy PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hh/3hhy_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The first crystallographic structures of a catechol 1,2-dioxygenase from a Gram-positive bacterium Rhodococcus opacus 1CP (Rho 1,2-CTD), a Fe(III) ion containing enzyme specialized in the aerobic biodegradation of catechols, and its adducts with catechol, 3-methylcatechol, 4-methylcatechol, pyrogallol (benzene-1,2,3-triol), 3-chlorocatechol, 4-chlorocatechol, 3,5-dichlorocatechol, 4,5-dichlorocatechol and protocatechuate (3,4-dihydroxybenzoate) have been determined and analyzed. This study represents the first extensive characterization of catechols adducts of 1,2-CTDs. The structural analyses reveal the diverse modes of binding to the active metal iron ion of the tested catechols thus allowing to identify the residues selectively involved in recognition of the diverse substrates by this class of enzymes. The comparison is further extended to the structural and functional characteristics of the other 1,2-CTDs isolated from Gram-positive and Gram-negative bacteria. Moreover the high structural homology of the present enzyme with the 3-chlorocatechol 1,2-dioxygenase from the same bacterium are discussed in terms of their different substrate specificity. The catalytic rates for Rho 1,2-CTD conversion of the tested compounds are also compared with the calculated energies of the highest occupied molecular orbital (E(HOMO)) of the substrates. A quantitative relationship (R=0.966) between the ln k(cat) and the calculated electronic parameter E(HOMO) was obtained for catechol, 3-methylcatechol, 4-methylcatechol, pyrogallol, 3-chlorocatechol, 4-chlorocatechol. This indicates that for these substrates the rate-limiting step of the reaction cycle is dependent on their nucleophilic reactivity. The discrepancies observed in the quantitative relationship for 3,5-dichlorocatechol, 4,5-dichlorocatechol and protocatechuate are ascribed to the sterical hindrances leading to the distorted binding of such catechols observed in the corresponding structures.

-	~~{{STRUCTURE_3hhy\| PDB=3hhy \| SCENE= }}~~	+	Catechol 1,2-dioxygenase from the Gram-positive Rhodococcus opacus 1CP: quantitative structure/activity relationship and the crystal structures of native enzyme and catechols adducts.,Matera I, Ferraroni M, Kolomytseva M, Golovleva L, Scozzafava A, Briganti F J Struct Biol. 2010 Jun;170(3):548-64. Epub 2009 Dec 28. PMID:20040374<ref>PMID:20040374</ref>

-	~~===Crystal structure determination of Catechol 1~~,~~2-Dioxygenase from Rhodococcus opacus 1CP in complex with catechol===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

-	~~{{ABSTRACT_PUBMED_20040374}}~~	+	==See Also==
-		+	*[[Dioxygenase\|Dioxygenase]]
-	==~~About this Structure~~==	+	== References ==
-	[[~~3hhy~~]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodococcus_opacus Rhodococcus opacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HHY OCA].	+	<references/>
-		+	__TOC__
-	==~~Reference~~==	+	</StructureSection>
-	<~~ref group="xtra">PMID:020040374<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Catechol 1,2-dioxygenase]]		[[Category: Catechol 1,2-dioxygenase]]
	[[Category: Rhodococcus opacus]]		[[Category: Rhodococcus opacus]]
-	[[Category: Briganti, F.]]	+	[[Category: Briganti, F]]
-	[[Category: Ferraroni, M.]]	+	[[Category: Ferraroni, M]]
-	[[Category: Kolomytseva, M.]]	+	[[Category: Kolomytseva, M]]
-	[[Category: Matera, I.]]	+	[[Category: Matera, I]]
-	[[Category: Scozzafava, A.]]	+	[[Category: Scozzafava, A]]
	[[Category: Aromatic hydrocarbons catabolism]]		[[Category: Aromatic hydrocarbons catabolism]]
	[[Category: Beta-sandwich]]		[[Category: Beta-sandwich]]

OCA: Protected "3hhy" [edit=sysop:move=sysop]

2013-03-06T14:42:24Z

Protected "3hhy" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:42, 6 March 2013

OCA at 14:42, 6 March 2013

2013-03-06T14:42:22Z

←Older revision		Revision as of 14:42, 6 March 2013
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-	{{Seed}}
	[[Image:3hhy.png\|left\|200px]]		[[Image:3hhy.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3hhy", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3hhy\| PDB=3hhy \| SCENE= }}		{{STRUCTURE_3hhy\| PDB=3hhy \| SCENE= }}

	===Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with catechol===		===Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with catechol===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_20040374}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 20040374 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_20040374}}		{{ABSTRACT_PUBMED_20040374}}

	==About this Structure==		==About this Structure==
-	~~3HHY~~ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodococcus_opacus Rhodococcus opacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HHY OCA].	+	[[3hhy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodococcus_opacus Rhodococcus opacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HHY OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20040374~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020040374</ref><references group="xtra"/>
	[[Category: Catechol 1,2-dioxygenase]]		[[Category: Catechol 1,2-dioxygenase]]
	[[Category: Rhodococcus opacus]]		[[Category: Rhodococcus opacus]]
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	[[Category: Metal-binding]]		[[Category: Metal-binding]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 26 08:39:40 2010''

OCA at 04:35, 26 May 2010

2010-05-26T04:35:30Z

←Older revision		Revision as of 04:35, 26 May 2010
Line 1:		Line 1:
	{{Seed}}		{{Seed}}
-	[[Image:3hhy.~~jpg~~\|left\|200px]]	+	[[Image:3hhy.png\|left\|200px]]

	<!--		<!--
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	==About this Structure==		==About this Structure==
-	3HHY is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Rhodococcus_opacus Rhodococcus opacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HHY OCA].	+	3HHY is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodococcus_opacus Rhodococcus opacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HHY OCA].

	==Reference==		==Reference==
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	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jan 13 13~~:56:04 2010''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 26 08:39:40 2010''

OCA at 11:56, 13 January 2010

2010-01-13T11:56:04Z

←Older revision		Revision as of 11:56, 13 January 2010
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-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3hhy.jpg\|left\|200px]]

-	The ~~entry 3hhy~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3hhy", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3hhy\| PDB=3hhy \| SCENE= }}

-	~~Authors: Matera~~, ~~I., Ferraroni, M., Kolomytseva, M., Briganti, F., Scozzafava, A.~~	+	===Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with catechol===

-	Description: Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with catechol

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jul 22 20~~:32:~~36 2009~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_20040374}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 20040374 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_20040374}}
		+
		+	==About this Structure==
		+	3HHY is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Rhodococcus_opacus Rhodococcus opacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HHY OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:20040374</ref><references group="xtra"/>
		+	[[Category: Catechol 1,2-dioxygenase]]
		+	[[Category: Rhodococcus opacus]]
		+	[[Category: Briganti, F.]]
		+	[[Category: Ferraroni, M.]]
		+	[[Category: Kolomytseva, M.]]
		+	[[Category: Matera, I.]]
		+	[[Category: Scozzafava, A.]]
		+	[[Category: Aromatic hydrocarbons catabolism]]
		+	[[Category: Beta-sandwich]]
		+	[[Category: Dioxygenase]]
		+	[[Category: Iron]]
		+	[[Category: Metal-binding]]
		+	[[Category: Oxidoreductase]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 13 13:56:04 2010''

OCA at 17:32, 22 July 2009

2009-07-22T17:32:37Z

←Older revision		Revision as of 17:32, 22 July 2009
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3hhy is ON HOLD	+	The entry 3hhy is ON HOLD until Paper Publication

	Authors: Matera, I., Ferraroni, M., Kolomytseva, M., Briganti, F., Scozzafava, A.		Authors: Matera, I., Ferraroni, M., Kolomytseva, M., Briganti, F., Scozzafava, A.
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	Description: Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with catechol		Description: Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with catechol

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu Jun 4 07~~:18:28 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 22 20:32:36 2009''