3hnj - Revision history

OCA at 07:25, 6 September 2023

2023-09-06T07:25:04Z

←Older revision		Revision as of 07:25, 6 September 2023
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	<StructureSection load='3hnj' size='340' side='right'caption='[[3hnj]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3hnj' size='340' side='right'caption='[[3hnj]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3hnj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_coli"_migula_1895 "bacillus~~ coli~~" migula 1895~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HNJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HNJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3hnj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HNJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HNJ FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>~~, ~~<scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[2qla\|2qla]], [[2bc5\|2bc5]], [[3hni\|3hni]], [[3hnk\|3hnk]], [[3hnl\|3hnl]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">cybC ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hnj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hnj OCA], [https://pdbe.org/3hnj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hnj RCSB], [https://www.ebi.ac.uk/pdbsum/3hnj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hnj ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hnj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hnj OCA], [https://pdbe.org/3hnj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hnj RCSB], [https://www.ebi.ac.uk/pdbsum/3hnj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hnj ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/C562_ECOLX C562_ECOLX]] Electron-transport protein of unknown function.	+	[https://www.uniprot.org/uniprot/C562_ECOLX C562_ECOLX] Electron-transport protein of unknown function.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 37:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus~~ coli ~~migula 1895~~]]	+	[[Category: Escherichia coli]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Brodin, J]]	+	[[Category: Brodin J]]
-	[[Category: Lewis~~, R A~~]]	+	[[Category: Lewis RA]]
-	[[Category: Salgado~~, E N~~]]	+	[[Category: Salgado EN]]
-	[[Category: Tezcan~~, F A]]~~	+	[[Category: Tezcan FA]]
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Metal binding protein~~]]	+

OCA at 12:01, 13 October 2021

2021-10-13T12:01:46Z

←Older revision		Revision as of 12:01, 13 October 2021
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	==Crystal structure of the Zn-induced tetramer of the engineered cyt cb562 variant RIDC-2==		==Crystal structure of the Zn-induced tetramer of the engineered cyt cb562 variant RIDC-2==
-	<StructureSection load='3hnj' size='340' side='right' caption='[[3hnj]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='3hnj' size='340' side='right'caption='[[3hnj]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3hnj]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HNJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3HNJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3hnj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HNJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HNJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2qla\|2qla]], [[2bc5\|2bc5]], [[3hni\|3hni]], [[3hnk\|3hnk]], [[3hnl\|3hnl]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2qla\|2qla]], [[2bc5\|2bc5]], [[3hni\|3hni]], [[3hnk\|3hnk]], [[3hnl\|3hnl]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cybC ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cybC ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3hnj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hnj OCA], [~~http~~://pdbe.org/3hnj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3hnj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3hnj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3hnj ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hnj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hnj OCA], [https://pdbe.org/3hnj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hnj RCSB], [https://www.ebi.ac.uk/pdbsum/3hnj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hnj ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/C562_ECOLX C562_ECOLX]] Electron-transport protein of unknown function.	+	[[https://www.uniprot.org/uniprot/C562_ECOLX C562_ECOLX]] Electron-transport protein of unknown function.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	==See Also==		==See Also==
-	*[[Cytochrome b5\|Cytochrome b5]]	+	*[[Cytochrome b5 3D structures\|Cytochrome b5 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 38:		Line 38:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus coli migula 1895]]		[[Category: Bacillus coli migula 1895]]
		+	[[Category: Large Structures]]
	[[Category: Brodin, J]]		[[Category: Brodin, J]]
	[[Category: Lewis, R A]]		[[Category: Lewis, R A]]

OCA at 07:37, 12 December 2018

2018-12-12T07:37:16Z

←Older revision		Revision as of 07:37, 12 December 2018
Line 1:		Line 1:
		+
	==Crystal structure of the Zn-induced tetramer of the engineered cyt cb562 variant RIDC-2==		==Crystal structure of the Zn-induced tetramer of the engineered cyt cb562 variant RIDC-2==
	<StructureSection load='3hnj' size='340' side='right' caption='[[3hnj]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3hnj' size='340' side='right' caption='[[3hnj]], [[Resolution\|resolution]] 2.00Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2qla\|2qla]], [[2bc5\|2bc5]], [[3hni\|3hni]], [[3hnk\|3hnk]], [[3hnl\|3hnl]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2qla\|2qla]], [[2bc5\|2bc5]], [[3hni\|3hni]], [[3hnk\|3hnk]], [[3hnl\|3hnl]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cybC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cybC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hnj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hnj OCA], [http://pdbe.org/3hnj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hnj RCSB], [http://www.ebi.ac.uk/pdbsum/3hnj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hnj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hnj OCA], [http://pdbe.org/3hnj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hnj RCSB], [http://www.ebi.ac.uk/pdbsum/3hnj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3hnj ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hn/3hnj_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hn/3hnj_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 03:49, 9 February 2016

2016-02-09T03:49:52Z

←Older revision		Revision as of 03:49, 9 February 2016
Line 2:		Line 2:
	<StructureSection load='3hnj' size='340' side='right' caption='[[3hnj]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3hnj' size='340' side='right' caption='[[3hnj]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3hnj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia~~ coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HNJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HNJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3hnj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HNJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HNJ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2qla\|2qla]], [[2bc5\|2bc5]], [[3hni\|3hni]], [[3hnk\|3hnk]], [[3hnl\|3hnl]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2qla\|2qla]], [[2bc5\|2bc5]], [[3hni\|3hni]], [[3hnk\|3hnk]], [[3hnl\|3hnl]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cybC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 ~~Escherichia~~ coli])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cybC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hnj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hnj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hnj RCSB], [http://www.ebi.ac.uk/pdbsum/3hnj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hnj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hnj OCA], [http://pdbe.org/3hnj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hnj RCSB], [http://www.ebi.ac.uk/pdbsum/3hnj PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hnj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 28:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3hnj" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia~~ coli]]	+	[[Category: Bacillus coli migula 1895]]
	[[Category: Brodin, J]]		[[Category: Brodin, J]]
	[[Category: Lewis, R A]]		[[Category: Lewis, R A]]

OCA at 04:13, 25 December 2014

2014-12-25T04:13:06Z

←Older revision		Revision as of 04:13, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3hnj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HNJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HNJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[3hnj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HNJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HNJ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2qla\|2qla]], [[2bc5\|2bc5]], [[3hni\|3hni]], [[3hnk\|3hnk]], [[3hnl\|3hnl]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2qla\|2qla]], [[2bc5\|2bc5]], [[3hni\|3hni]], [[3hnk\|3hnk]], [[3hnl\|3hnl]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cybC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cybC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hnj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hnj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hnj RCSB], [http://www.ebi.ac.uk/pdbsum/3hnj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hnj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hnj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hnj RCSB], [http://www.ebi.ac.uk/pdbsum/3hnj PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/C562_ECOLX C562_ECOLX]] Electron-transport protein of unknown function.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Brodin, J.]]	+	[[Category: Brodin, J]]
-	[[Category: Lewis, R A.]]	+	[[Category: Lewis, R A]]
-	[[Category: Salgado, E N.]]	+	[[Category: Salgado, E N]]
-	[[Category: Tezcan, F A.]]	+	[[Category: Tezcan, F A]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Metal binding protein]]		[[Category: Metal binding protein]]

OCA at 12:45, 29 September 2014

2014-09-29T12:45:18Z

←Older revision		Revision as of 12:45, 29 September 2014
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-	[[~~Image:~~3hnj.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of the Zn-induced tetramer of the engineered cyt cb562 variant RIDC-2==
		+	<StructureSection load='3hnj' size='340' side='right' caption='[[3hnj]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3hnj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HNJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HNJ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2qla\|2qla]], [[2bc5\|2bc5]], [[3hni\|3hni]], [[3hnk\|3hnk]], [[3hnl\|3hnl]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cybC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hnj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hnj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hnj RCSB], [http://www.ebi.ac.uk/pdbsum/3hnj PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hn/3hnj_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Metal coordination is a key structural and functional component of a large fraction of proteins. Given this dual role we considered the possibility that metal coordination may have played a templating role in the early evolution of protein folds and complexes. We describe here a rational design approach, Metal Templated Interface Redesign (MeTIR), that mimics the time course of a hypothetical evolutionary pathway for the formation of stable protein assemblies through an initial metal coordination event. Using a folded monomeric protein, cytochrome cb(562), as a building block we show that its non-self-associating surface can be made self-associating through a minimal number of mutations that enable Zn coordination. The protein interfaces in the resulting Zn-directed, D(2)-symmetrical tetramer are subsequently redesigned, yielding unique protein architectures that self-assemble in the presence or absence of metals. Aside from its evolutionary implications, MeTIR provides a route to engineer de novo protein interfaces and metal coordination environments that can be tuned through the extensive noncovalent bonding interactions in these interfaces.

-	~~{{STRUCTURE_3hnj\| PDB=3hnj \| SCENE= }}~~	+	Metal templated design of protein interfaces.,Salgado EN, Ambroggio XI, Brodin JD, Lewis RA, Kuhlman B, Tezcan FA Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):1827-32. Epub 2009 Dec 23. PMID:20080561<ref>PMID:20080561</ref>

-	~~===Crystal structure~~ of the ~~Zn-induced tetramer of the engineered cyt cb562 variant RIDC-2===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_20080561}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3hnj]] is a 4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Escherichia_coli Escherichia coli]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3HNJ OCA].~~	+

	==See Also==		==See Also==
	*[[Cytochrome b5\|Cytochrome b5]]		*[[Cytochrome b5\|Cytochrome b5]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:020080561<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Brodin, J.]]		[[Category: Brodin, J.]]

OCA at 12:32, 20 October 2012

2012-10-20T12:32:48Z

←Older revision		Revision as of 12:32, 20 October 2012
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	==About this Structure==		==About this Structure==
-	[[3hnj]] is a 4 chain structure ~~of [[Cytochrome b5]]~~ with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HNJ OCA].	+	[[3hnj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HNJ OCA].

	==See Also==		==See Also==

OCA: Protected "3hnj" [edit=sysop:move=sysop]

2012-07-26T09:04:34Z

Protected "3hnj" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:04, 26 July 2012

OCA at 09:04, 26 July 2012

2012-07-26T09:04:32Z

←Older revision		Revision as of 09:04, 26 July 2012
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-	~~{{Seed}}~~	+	[[Image:3hnj.png\|left\|200px]]
-	[[Image:3hnj.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3hnj", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3hnj\| PDB=3hnj \| SCENE= }}		{{STRUCTURE_3hnj\| PDB=3hnj \| SCENE= }}

	===Crystal structure of the Zn-induced tetramer of the engineered cyt cb562 variant RIDC-2===		===Crystal structure of the Zn-induced tetramer of the engineered cyt cb562 variant RIDC-2===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_20080561}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 20080561 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_20080561}}		{{ABSTRACT_PUBMED_20080561}}

	==About this Structure==		==About this Structure==
-	~~3HNJ~~ is a 4 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HNJ OCA].	+	[[3hnj]] is a 4 chain structure of [[Cytochrome b5]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HNJ OCA].
		+
		+	==See Also==
		+	*[[Cytochrome b5\|Cytochrome b5]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20080561~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020080561</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Brodin, J.]]		[[Category: Brodin, J.]]
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	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Metal binding protein]]		[[Category: Metal binding protein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 10 17:14:06 2010''

OCA at 15:14, 10 February 2010

2010-02-10T15:14:07Z

←Older revision		Revision as of 15:14, 10 February 2010
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-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3hnj.jpg\|left\|200px]]

-	The ~~entry 3hnj~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3hnj", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3hnj\| PDB=3hnj \| SCENE= }}

-	~~Authors: Salgado, E.N., Lewis, R.A., Brodin, J., Tezcan, F.A.~~	+	===Crystal structure of the Zn-induced tetramer of the engineered cyt cb562 variant RIDC-2===

-	Description: Crystal structure of the Zn-induced tetramer of the engineered cyt cb562 variant RIDC-2

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb ~~3 09~~:14:52 2010''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_20080561}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 20080561 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_20080561}}
		+
		+	==About this Structure==
		+	3HNJ is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HNJ OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:20080561</ref><references group="xtra"/>
		+	[[Category: Escherichia coli]]
		+	[[Category: Brodin, J.]]
		+	[[Category: Lewis, R A.]]
		+	[[Category: Salgado, E N.]]
		+	[[Category: Tezcan, F A.]]
		+	[[Category: Electron transport]]
		+	[[Category: Metal binding protein]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 10 17:14:06 2010''